Wall clock time and date at job start Wed Apr 1 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47040 * 2 1 4 4 N 1.46500 * 109.46485 * 119.99572 * 2 1 3 5 5 C 1.36943 * 119.99941 * 274.99903 * 4 2 1 6 6 H 1.08001 * 119.99955 * 0.02562 * 5 4 2 7 7 C 1.38817 * 120.00007 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47087 * 119.99742 * 9 7 5 12 12 H 1.48503 * 109.46582 * 239.99613 * 9 7 5 13 13 C 1.52991 * 109.47319 * 239.99611 * 2 1 3 14 14 H 1.09007 * 109.49766 * 184.94072 * 13 2 1 15 15 C 1.53036 * 109.50146 * 64.84118 * 13 2 1 16 16 C 1.53041 * 109.54099 * 178.68213 * 15 13 2 17 17 C 1.53193 * 109.31293 * 61.36471 * 16 15 13 18 18 N 1.46925 * 108.77357 * 305.36465 * 17 16 15 19 19 C 1.34777 * 120.63167 * 233.62574 * 18 17 16 20 20 O 1.21619 * 120.00141 * 172.74088 * 19 18 17 21 21 C 1.47324 * 120.00030 * 352.74942 * 19 18 17 22 22 C 1.36568 * 126.21392 * 172.68081 * 21 19 18 23 23 N 1.34867 * 106.78941 * 179.97438 * 22 21 19 24 24 C 1.36310 * 107.86092 * 0.08626 * 23 22 21 25 25 N 1.29787 * 108.92166 * 359.65953 * 24 23 22 26 26 C 1.51107 * 123.90114 * 179.85837 * 24 23 22 27 27 C 1.53387 * 108.19524 * 344.07284 * 26 24 23 28 28 C 1.53138 * 109.24789 * 48.94604 * 27 26 24 29 29 C 1.46583 * 127.50237 * 180.13401 * 23 22 21 30 30 C 1.46924 * 118.74077 * 53.61150 * 18 17 16 31 31 H 1.09000 * 109.47369 * 300.00653 * 1 2 3 32 32 H 1.09000 * 109.46639 * 60.00623 * 1 2 3 33 33 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 34 34 H 0.96993 * 120.00318 * 95.00947 * 4 2 1 35 35 H 0.97001 * 119.99166 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.45732 * 298.70076 * 15 13 2 37 37 H 1.09000 * 109.46152 * 58.65764 * 15 13 2 38 38 H 1.08994 * 109.49905 * 301.41213 * 16 15 13 39 39 H 1.09000 * 109.52119 * 181.32688 * 16 15 13 40 40 H 1.08992 * 109.58577 * 185.57916 * 17 16 15 41 41 H 1.08999 * 109.70520 * 65.22037 * 17 16 15 42 42 H 1.08001 * 126.60509 * 359.96500 * 22 21 19 43 43 H 1.09000 * 109.71754 * 224.39469 * 26 24 23 44 44 H 1.09004 * 109.75261 * 103.77218 * 26 24 23 45 45 H 1.08997 * 109.51085 * 289.01800 * 27 26 24 46 46 H 1.09001 * 109.54123 * 168.89798 * 27 26 24 47 47 H 1.09005 * 109.46181 * 170.17152 * 28 27 26 48 48 H 1.09001 * 109.46210 * 50.21199 * 28 27 26 49 49 H 1.08995 * 109.58371 * 282.58244 * 29 23 22 50 50 H 1.08993 * 109.58368 * 43.01030 * 29 23 22 51 51 H 1.09002 * 109.59067 * 186.60628 * 30 18 17 52 52 H 1.08998 * 109.59005 * 66.17273 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1489 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6120 -0.6615 3.5093 8 7 2.9250 -1.9386 3.4502 9 14 2.7897 0.2704 5.1185 10 1 2.3749 1.6825 4.9211 11 1 1.9293 -0.3589 6.1524 12 1 4.2066 0.2282 5.5609 13 6 2.0401 -0.7213 -1.2491 14 1 3.1265 -0.7988 -1.2063 15 6 1.6322 0.0664 -2.4962 16 6 2.1701 -0.6369 -3.7445 17 6 1.5611 -2.0395 -3.8378 18 7 1.8251 -2.7542 -2.5816 19 6 2.4189 -3.9640 -2.5916 20 8 2.7517 -4.4868 -1.5451 21 6 2.6652 -4.6532 -3.8701 22 6 3.3763 -5.8065 -4.0412 23 7 3.3538 -6.0861 -5.3604 24 6 2.6363 -5.1084 -5.9827 25 7 2.2219 -4.2593 -5.0929 26 6 2.3860 -5.0652 -7.4723 27 6 3.3737 -6.0219 -8.1519 28 6 3.3452 -7.3727 -7.4311 29 6 3.9751 -7.2255 -6.0419 30 6 1.4296 -2.1249 -1.3142 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6316 1.1528 35 1 3.2482 -2.3957 4.2423 36 1 0.5449 0.1222 -2.5509 37 1 2.0449 1.0737 -2.4406 38 1 3.2552 -0.7151 -3.6788 39 1 1.8995 -0.0631 -4.6309 40 1 2.0149 -2.5803 -4.6682 41 1 0.4853 -1.9633 -3.9958 42 1 3.8631 -6.3835 -3.2688 43 1 2.5418 -4.0518 -7.8422 44 1 1.3641 -5.3805 -7.6834 45 1 4.3789 -5.6036 -8.1014 46 1 3.0887 -6.1598 -9.1949 47 1 3.9086 -8.1050 -8.0095 48 1 2.3131 -7.7078 -7.3282 49 1 5.0462 -7.0510 -6.1431 50 1 3.8036 -8.1341 -5.4648 51 1 1.7968 -2.7220 -0.4795 52 1 0.3431 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496433399.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:50 Heat of formation + Delta-G solvation = 36.221531 kcal Electronic energy + Delta-G solvation = -31249.820770 eV Core-core repulsion = 27250.263335 eV Total energy + Delta-G solvation = -3999.557434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.66254 -39.70781 -37.64735 -36.81447 -35.22552 -33.79850 -32.71344 -31.65612 -30.48346 -29.46356 -28.93869 -27.68987 -25.77284 -24.67050 -24.23924 -23.02433 -22.58311 -22.43453 -20.83244 -19.53172 -19.17936 -18.41881 -17.41226 -16.98335 -16.56688 -16.26176 -15.60708 -15.01256 -14.81062 -14.69462 -14.55775 -14.33449 -14.24795 -14.01499 -13.91099 -13.68151 -13.48579 -13.35551 -12.82770 -12.69185 -12.48716 -12.27446 -12.23657 -11.76160 -11.71971 -11.67701 -11.58464 -11.33516 -11.15025 -10.84915 -10.78052 -10.45502 -10.26886 -10.13427 -10.07232 -10.00834 -9.84887 -9.77054 -9.44760 -9.23445 -8.78054 -8.63642 -8.09180 -6.80822 -5.61252 -2.90240 1.55332 2.25115 2.32475 3.38171 3.52027 3.56819 3.59596 3.68501 3.80646 3.99407 4.07088 4.11501 4.55596 4.67637 4.69994 4.79913 4.81510 4.89927 5.08553 5.14708 5.15765 5.25986 5.28829 5.31150 5.35259 5.44333 5.50389 5.56368 5.68602 5.73206 5.85281 5.86922 5.95511 5.96453 6.08598 6.14894 6.19024 6.30598 6.33096 6.42306 6.51681 6.56357 6.62293 6.74831 6.78502 6.87314 7.05586 7.11047 7.27959 7.61757 7.83292 7.87229 8.56568 8.57822 9.67298 10.27219 10.61596 11.61049 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002400 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.575037 B =11664.235392 C =12795.585076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.072 0.928 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.084 3.916 18 N -0.595 5.595 19 C 0.595 3.405 20 O -0.538 6.538 21 C -0.052 4.052 22 C 0.035 3.965 23 N -0.454 5.454 24 C 0.205 3.795 25 N -0.453 5.453 26 C -0.034 4.034 27 C -0.126 4.126 28 C -0.136 4.136 29 C 0.100 3.900 30 C 0.116 3.884 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.385 0.615 35 H 0.253 0.747 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.134 0.866 41 H 0.057 0.943 42 H 0.189 0.811 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.094 0.906 51 H 0.098 0.902 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -10.070 -30.499 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.212 4.212 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.039 4.039 18 N -0.326 5.326 19 C 0.383 3.617 20 O -0.415 6.415 21 C -0.180 4.180 22 C -0.104 4.104 23 N -0.137 5.137 24 C -0.058 4.058 25 N -0.174 5.174 26 C -0.072 4.072 27 C -0.164 4.164 28 C -0.173 4.173 29 C -0.021 4.021 30 C -0.006 4.006 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.220 0.780 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.206 0.794 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.112 0.888 51 H 0.116 0.884 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.263 -9.648 -29.970 31.486 hybrid contribution 0.637 -0.495 1.270 1.505 sum 0.374 -10.143 -28.700 30.442 Atomic orbital electron populations 1.22567 0.99594 1.00885 0.99835 1.20178 0.91767 0.95218 0.85865 0.93436 1.42519 1.78057 1.10864 1.05292 1.19276 1.36198 0.93812 0.87398 0.91245 1.24751 1.02469 0.95968 0.97969 1.69699 1.50948 1.08562 1.28570 0.86160 0.77203 0.78738 0.84365 1.20669 1.22017 1.22031 1.21754 1.00903 0.94389 0.95167 0.90914 1.21616 1.00895 0.98713 0.93972 1.21921 1.00771 0.96201 0.98184 1.22522 1.00613 0.92912 0.87841 1.47904 1.58934 1.17489 1.08319 1.16971 0.77569 0.80943 0.86265 1.90854 1.51932 1.66487 1.32181 1.20704 1.06810 0.97883 0.92619 1.22459 1.03432 0.99169 0.85301 1.45286 1.40408 1.21154 1.06821 1.23651 0.97731 0.87644 0.96748 1.70169 1.23044 1.25452 0.98685 1.20244 1.00633 1.01936 0.84427 1.21686 1.00243 0.94453 1.00068 1.21907 1.02590 0.98825 0.94006 1.22098 0.98185 0.87738 0.94122 1.21847 0.99091 0.93901 0.85723 0.92999 0.94316 0.93218 0.78027 0.93653 0.91707 0.92030 0.92127 0.91421 0.84886 0.92486 0.79409 0.88429 0.89066 0.90981 0.89793 0.89094 0.90440 0.89337 0.88768 0.88377 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.77 37.16 0.33 -2.88 16 2 C 0.18 3.79 2.67 -67.93 -0.18 3.60 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.73 -19.24 5.06 -53.43 -0.27 -19.51 16 5 C -0.24 -6.83 9.93 -15.05 -0.15 -6.98 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.93 -29.68 13.06 55.49 0.72 -28.96 16 9 Si 0.90 23.38 29.55 -169.99 -5.02 18.35 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 12 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 13 C -0.10 -1.87 2.27 -90.50 -0.21 -2.08 16 14 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 15 C -0.11 -1.65 4.89 -26.69 -0.13 -1.79 16 16 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 17 C 0.08 1.18 6.09 -3.71 -0.02 1.16 16 18 N -0.60 -10.31 2.97 -174.07 -0.52 -10.82 16 19 C 0.60 11.06 7.67 -12.57 -0.10 10.96 16 20 O -0.54 -11.95 16.32 5.26 0.09 -11.87 16 21 C -0.05 -0.78 6.65 -82.97 -0.55 -1.33 16 22 C 0.03 0.42 11.33 -16.82 -0.19 0.23 16 23 N -0.45 -4.09 3.11 -113.42 -0.35 -4.44 16 24 C 0.20 2.00 7.64 -154.64 -1.18 0.82 16 25 N -0.45 -5.89 7.78 -7.01 -0.05 -5.94 16 26 C -0.03 -0.18 6.33 -27.48 -0.17 -0.36 16 27 C -0.13 -0.40 5.95 -26.46 -0.16 -0.55 16 28 C -0.14 -0.38 5.93 -26.54 -0.16 -0.54 16 29 C 0.10 0.46 6.96 -3.87 -0.03 0.43 16 30 C 0.12 2.20 5.19 -3.71 -0.02 2.18 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.61 6.59 -51.93 -0.34 0.27 16 33 H 0.05 0.95 6.23 -51.93 -0.32 0.63 16 34 H 0.39 11.05 6.47 -40.82 -0.26 10.79 16 35 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.06 0.89 6.63 -51.93 -0.34 0.55 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.13 1.83 4.13 -59.96 -0.25 1.59 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 46 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 47 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 48 H 0.08 0.26 8.11 -51.93 -0.42 -0.16 16 49 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.10 2.24 5.81 -51.93 -0.30 1.94 16 52 H 0.07 1.26 6.06 -51.93 -0.31 0.94 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -36.74 397.16 -11.04 -47.78 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.44 Total: 9.00 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.18 Total: 0.43 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -0.47 Total: -69.68 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.74 -11.04 -47.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496433399.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.002 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds