Wall clock time and date at job start Wed Apr 1 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47040 * 2 1 4 4 N 1.46500 * 109.46485 * 119.99572 * 2 1 3 5 5 C 1.36943 * 119.99941 * 274.99903 * 4 2 1 6 6 H 1.08001 * 119.99955 * 0.02562 * 5 4 2 7 7 C 1.38817 * 120.00007 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47087 * 119.99742 * 9 7 5 12 12 H 1.48503 * 109.46582 * 239.99613 * 9 7 5 13 13 C 1.52991 * 109.47319 * 239.99611 * 2 1 3 14 14 H 1.09007 * 109.49766 * 184.94072 * 13 2 1 15 15 C 1.53036 * 109.50146 * 64.84118 * 13 2 1 16 16 C 1.53041 * 109.54099 * 178.68213 * 15 13 2 17 17 C 1.53193 * 109.31293 * 61.36471 * 16 15 13 18 18 N 1.46925 * 108.77357 * 305.36465 * 17 16 15 19 19 C 1.34777 * 120.63167 * 233.62574 * 18 17 16 20 20 O 1.21619 * 120.00141 * 172.74088 * 19 18 17 21 21 C 1.47324 * 120.00030 * 352.74942 * 19 18 17 22 22 C 1.36568 * 126.21392 * 172.68081 * 21 19 18 23 23 N 1.34867 * 106.78941 * 179.97438 * 22 21 19 24 24 C 1.36310 * 107.86092 * 0.08626 * 23 22 21 25 25 N 1.29787 * 108.92166 * 359.65953 * 24 23 22 26 26 C 1.51107 * 123.90114 * 179.85837 * 24 23 22 27 27 C 1.53387 * 108.19524 * 344.07284 * 26 24 23 28 28 C 1.53138 * 109.24789 * 48.94604 * 27 26 24 29 29 C 1.46583 * 127.50237 * 180.13401 * 23 22 21 30 30 C 1.46924 * 118.74077 * 53.61150 * 18 17 16 31 31 H 1.09000 * 109.47369 * 300.00653 * 1 2 3 32 32 H 1.09000 * 109.46639 * 60.00623 * 1 2 3 33 33 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 34 34 H 0.96993 * 120.00318 * 95.00947 * 4 2 1 35 35 H 0.97001 * 119.99166 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.45732 * 298.70076 * 15 13 2 37 37 H 1.09000 * 109.46152 * 58.65764 * 15 13 2 38 38 H 1.08994 * 109.49905 * 301.41213 * 16 15 13 39 39 H 1.09000 * 109.52119 * 181.32688 * 16 15 13 40 40 H 1.08992 * 109.58577 * 185.57916 * 17 16 15 41 41 H 1.08999 * 109.70520 * 65.22037 * 17 16 15 42 42 H 1.08001 * 126.60509 * 359.96500 * 22 21 19 43 43 H 1.09000 * 109.71754 * 224.39469 * 26 24 23 44 44 H 1.09004 * 109.75261 * 103.77218 * 26 24 23 45 45 H 1.08997 * 109.51085 * 289.01800 * 27 26 24 46 46 H 1.09001 * 109.54123 * 168.89798 * 27 26 24 47 47 H 1.09005 * 109.46181 * 170.17152 * 28 27 26 48 48 H 1.09001 * 109.46210 * 50.21199 * 28 27 26 49 49 H 1.08995 * 109.58371 * 282.58244 * 29 23 22 50 50 H 1.08993 * 109.58368 * 43.01030 * 29 23 22 51 51 H 1.09002 * 109.59067 * 186.60628 * 30 18 17 52 52 H 1.08998 * 109.59005 * 66.17273 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1489 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6120 -0.6615 3.5093 8 7 2.9250 -1.9386 3.4502 9 14 2.7897 0.2704 5.1185 10 1 2.3749 1.6825 4.9211 11 1 1.9293 -0.3589 6.1524 12 1 4.2066 0.2282 5.5609 13 6 2.0401 -0.7213 -1.2491 14 1 3.1265 -0.7988 -1.2063 15 6 1.6322 0.0664 -2.4962 16 6 2.1701 -0.6369 -3.7445 17 6 1.5611 -2.0395 -3.8378 18 7 1.8251 -2.7542 -2.5816 19 6 2.4189 -3.9640 -2.5916 20 8 2.7517 -4.4868 -1.5451 21 6 2.6652 -4.6532 -3.8701 22 6 3.3763 -5.8065 -4.0412 23 7 3.3538 -6.0861 -5.3604 24 6 2.6363 -5.1084 -5.9827 25 7 2.2219 -4.2593 -5.0929 26 6 2.3860 -5.0652 -7.4723 27 6 3.3737 -6.0219 -8.1519 28 6 3.3452 -7.3727 -7.4311 29 6 3.9751 -7.2255 -6.0419 30 6 1.4296 -2.1249 -1.3142 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6316 1.1528 35 1 3.2482 -2.3957 4.2423 36 1 0.5449 0.1222 -2.5509 37 1 2.0449 1.0737 -2.4406 38 1 3.2552 -0.7151 -3.6788 39 1 1.8995 -0.0631 -4.6309 40 1 2.0149 -2.5803 -4.6682 41 1 0.4853 -1.9633 -3.9958 42 1 3.8631 -6.3835 -3.2688 43 1 2.5418 -4.0518 -7.8422 44 1 1.3641 -5.3805 -7.6834 45 1 4.3789 -5.6036 -8.1014 46 1 3.0887 -6.1598 -9.1949 47 1 3.9086 -8.1050 -8.0095 48 1 2.3131 -7.7078 -7.3282 49 1 5.0462 -7.0510 -6.1431 50 1 3.8036 -8.1341 -5.4648 51 1 1.7968 -2.7220 -0.4795 52 1 0.3431 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496433399.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:48 Heat of formation + Delta-G solvation = 13.034578 kcal Electronic energy + Delta-G solvation = -31250.826231 eV Core-core repulsion = 27250.263335 eV Total energy + Delta-G solvation = -4000.562896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.49229 -41.08503 -39.09930 -37.39936 -36.88853 -34.74303 -34.28439 -33.17357 -31.64643 -30.87764 -29.63068 -29.33150 -26.92674 -26.27657 -25.23000 -24.61705 -23.52815 -23.13228 -22.21362 -20.61575 -20.03398 -19.81221 -19.21552 -18.22238 -17.49932 -17.15017 -16.92268 -16.69662 -16.13665 -15.79618 -15.50634 -15.43661 -15.24763 -15.12682 -15.01888 -14.74083 -14.60653 -14.38007 -14.28055 -13.97878 -13.91670 -13.89204 -13.31355 -12.98044 -12.86643 -12.78611 -12.65148 -12.41255 -12.13483 -12.04040 -11.97490 -11.93019 -11.80007 -11.79731 -11.75007 -11.44232 -11.28982 -11.19196 -10.94972 -10.75545 -10.36860 -9.71993 -9.36214 -9.00372 -7.91317 -5.21172 0.51512 1.33424 1.44393 1.46787 1.56745 1.62031 2.11090 2.43889 2.56465 3.10071 3.40917 3.53443 3.63423 3.72148 3.82156 3.88623 3.93354 3.99792 4.07798 4.17070 4.21360 4.34777 4.38291 4.41212 4.44403 4.46429 4.52753 4.63309 4.68471 4.74503 4.86506 4.88968 4.92500 4.94674 4.97572 5.03361 5.10264 5.11241 5.13319 5.15607 5.17316 5.23651 5.34233 5.35492 5.45026 5.47448 5.54996 5.67008 5.75280 6.12139 6.29570 6.46057 6.79254 7.20248 7.33960 8.12241 8.34653 9.32607 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002400 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.575037 B =11664.235392 C =12795.585076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.049 0.951 4 N -0.741 5.741 5 C -0.234 4.234 6 H 0.080 0.920 7 C -0.085 4.085 8 N -0.974 5.974 9 Si 0.976 3.024 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.296 1.296 13 C -0.089 4.089 14 H 0.040 0.960 15 C -0.107 4.107 16 C -0.125 4.125 17 C 0.082 3.918 18 N -0.596 5.596 19 C 0.584 3.416 20 O -0.594 6.594 21 C -0.089 4.089 22 C 0.039 3.961 23 N -0.447 5.447 24 C 0.214 3.786 25 N -0.475 5.475 26 C -0.034 4.034 27 C -0.122 4.122 28 C -0.131 4.131 29 C 0.089 3.911 30 C 0.124 3.876 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.142 0.858 41 H 0.070 0.930 42 H 0.193 0.807 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.048 0.952 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -9.229 -34.473 35.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.067 0.933 4 N -0.382 5.382 5 C -0.366 4.366 6 H 0.097 0.903 7 C -0.277 4.277 8 N -0.626 5.626 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.223 1.223 13 C -0.110 4.110 14 H 0.059 0.941 15 C -0.144 4.144 16 C -0.163 4.163 17 C -0.040 4.040 18 N -0.326 5.326 19 C 0.374 3.626 20 O -0.475 6.475 21 C -0.216 4.216 22 C -0.102 4.102 23 N -0.127 5.127 24 C -0.050 4.050 25 N -0.196 5.196 26 C -0.073 4.073 27 C -0.160 4.160 28 C -0.168 4.168 29 C -0.031 4.031 30 C 0.002 3.998 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.088 0.912 42 H 0.210 0.790 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.089 0.911 46 H 0.127 0.873 47 H 0.136 0.864 48 H 0.093 0.907 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.066 0.934 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.961 -8.750 -34.035 35.155 hybrid contribution 0.852 -0.814 2.340 2.620 sum -0.109 -9.564 -31.695 33.107 Atomic orbital electron populations 1.22392 0.97318 1.00788 1.01128 1.20462 0.93232 0.94859 0.84955 0.93297 1.42795 1.78454 1.10320 1.06589 1.19718 1.34374 0.94229 0.88260 0.90260 1.25658 1.03295 0.96904 1.01810 1.69901 1.52950 1.10513 1.29201 0.85027 0.76645 0.78242 0.79599 1.18588 1.22208 1.22300 1.21582 0.98710 0.94408 0.96261 0.94101 1.21600 1.02080 0.98642 0.92117 1.21904 0.99761 0.95706 0.98923 1.22778 1.01604 0.93251 0.86334 1.48038 1.58365 1.17438 1.08754 1.17594 0.76777 0.81111 0.87123 1.90803 1.54434 1.67855 1.34452 1.20296 1.09823 0.99405 0.92086 1.22546 1.02404 0.98242 0.87014 1.45568 1.39612 1.21949 1.05611 1.24531 0.95793 0.86509 0.98169 1.70007 1.24348 1.27054 0.98175 1.20529 1.02125 1.03366 0.81291 1.21709 0.99434 0.93746 1.01088 1.21952 1.02706 0.99406 0.92775 1.22559 0.98945 0.86499 0.95110 1.21567 0.99243 0.93611 0.85404 0.94459 0.90142 0.94012 0.79946 0.94298 0.89897 0.90632 0.93515 0.87545 0.84161 0.91150 0.78987 0.87612 0.87830 0.91111 0.87341 0.86401 0.90712 0.87910 0.87643 0.93361 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.77 71.98 0.63 -5.19 16 2 C 0.17 7.38 2.67 44.99 0.12 7.50 16 3 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 4 N -0.74 -41.09 5.06 -322.94 -1.63 -42.73 16 5 C -0.23 -13.90 9.93 84.03 0.83 -13.06 16 6 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 7 C -0.09 -5.26 5.50 84.86 0.47 -4.80 16 8 N -0.97 -65.24 13.06 21.65 0.28 -64.96 16 9 Si 0.98 49.27 29.55 68.60 2.03 51.30 16 10 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 12 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 13 C -0.09 -3.37 2.27 -10.72 -0.02 -3.40 16 14 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 15 C -0.11 -2.87 4.89 30.62 0.15 -2.72 16 16 C -0.12 -3.00 6.08 30.67 0.19 -2.81 16 17 C 0.08 2.22 6.09 86.36 0.53 2.74 16 18 N -0.60 -21.62 2.97 -822.90 -2.45 -24.07 16 19 C 0.58 23.41 7.67 86.63 0.66 24.08 16 20 O -0.59 -29.19 16.32 -4.09 -0.07 -29.25 16 21 C -0.09 -2.78 6.65 40.52 0.27 -2.51 16 22 C 0.04 0.98 11.33 83.84 0.95 1.93 16 23 N -0.45 -7.50 3.11 -512.76 -1.60 -9.09 16 24 C 0.21 3.85 7.64 138.05 1.05 4.90 16 25 N -0.48 -12.14 7.78 -176.08 -1.37 -13.51 16 26 C -0.03 -0.27 6.33 30.11 0.19 -0.08 16 27 C -0.12 -0.29 5.95 30.77 0.18 -0.11 16 28 C -0.13 -0.26 5.93 30.72 0.18 -0.08 16 29 C 0.09 0.60 6.96 86.44 0.60 1.20 16 30 C 0.12 5.01 5.19 86.37 0.45 5.45 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.31 6.59 -2.39 -0.02 2.29 16 33 H 0.04 1.60 6.23 -2.39 -0.01 1.59 16 34 H 0.37 22.73 6.47 -92.71 -0.60 22.13 16 35 H 0.25 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.08 1.98 6.63 -2.38 -0.02 1.96 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 39 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.14 3.75 4.13 -18.25 -0.08 3.67 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.19 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.07 0.24 8.12 -2.39 -0.02 0.22 16 46 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.12 -0.31 8.14 -2.38 -0.02 -0.33 16 48 H 0.07 0.24 8.11 -2.39 -0.02 0.22 16 49 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.05 2.43 5.81 -2.39 -0.01 2.42 16 52 H 0.08 2.95 6.06 -2.39 -0.01 2.93 16 Total: -1.00 -86.89 397.16 2.90 -84.00 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.26 Total: 35.27 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 7.43 Total: 13.05 kcal Atomic # 7 Polarization: -147.59 SS G_CDS: -6.76 Total: -154.35 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.07 Total: -29.25 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Total: -86.89 2.90 -84.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496433399.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.032 kcal (2) G-P(sol) polarization free energy of solvation -86.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds