Wall clock time and date at job start Wed Apr 1 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47074 * 119.99929 * 2 1 3 5 5 C 1.36926 * 120.00052 * 275.00030 * 4 2 1 6 6 H 1.07998 * 120.00384 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00294 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99313 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00484 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46935 * 59.99775 * 9 7 5 11 11 H 1.48493 * 109.47114 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47095 * 300.00223 * 9 7 5 13 13 C 1.53002 * 109.47246 * 240.00178 * 2 1 3 14 14 H 1.08994 * 109.52422 * 300.08134 * 13 2 1 15 15 C 1.53045 * 109.49879 * 60.16242 * 13 2 1 16 16 C 1.53036 * 109.53780 * 181.31989 * 15 13 2 17 17 C 1.53627 * 109.24088 * 298.50704 * 16 15 13 18 18 N 1.46922 * 108.54235 * 54.85770 * 17 16 15 19 19 C 1.34782 * 120.63108 * 126.36716 * 18 17 16 20 20 O 1.21599 * 120.00041 * 175.48332 * 19 18 17 21 21 C 1.47425 * 119.99851 * 355.48563 * 19 18 17 22 22 C 1.39980 * 120.61032 * 54.92593 * 21 19 18 23 23 C 1.38331 * 118.37015 * 179.72407 * 22 21 19 24 24 C 1.38379 * 119.50448 * 0.02562 * 23 22 21 25 25 N 1.31849 * 121.22173 * 0.02562 * 24 23 22 26 26 C 1.32429 * 121.77187 * 359.95651 * 25 24 23 27 27 N 1.38270 * 119.82558 * 180.02562 * 26 25 24 28 28 C 1.46906 * 110.99421 * 304.94553 * 27 26 25 29 29 C 1.46897 * 111.00215 * 68.89973 * 27 26 25 30 30 C 1.46932 * 118.74022 * 306.09606 * 18 17 16 31 31 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47084 * 299.99889 * 1 2 3 33 33 H 1.08999 * 109.46558 * 60.00070 * 1 2 3 34 34 H 0.96999 * 119.99822 * 95.00383 * 4 2 1 35 35 H 0.97001 * 119.99508 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.45703 * 301.34156 * 15 13 2 37 37 H 1.08999 * 109.45847 * 61.30405 * 15 13 2 38 38 H 1.08992 * 109.50081 * 58.58744 * 16 15 13 39 39 H 1.09003 * 109.49371 * 178.68167 * 16 15 13 40 40 H 1.09004 * 109.74154 * 295.12080 * 17 16 15 41 41 H 1.08994 * 109.66238 * 174.55284 * 17 16 15 42 42 H 1.08002 * 120.81286 * 359.75517 * 22 21 19 43 43 H 1.07994 * 120.24625 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.38913 * 179.97438 * 24 23 22 45 45 H 1.09005 * 109.46870 * 60.00290 * 28 27 26 46 46 H 1.08998 * 109.46553 * 179.97438 * 28 27 26 47 47 H 1.09001 * 109.47038 * 300.00024 * 28 27 26 48 48 H 1.08998 * 109.47082 * 64.97616 * 29 27 26 49 49 H 1.09001 * 109.47252 * 184.98222 * 29 27 26 50 50 H 1.09007 * 109.46929 * 304.97813 * 29 27 26 51 51 H 1.08998 * 109.58626 * 173.64495 * 30 18 17 52 52 H 1.08999 * 109.58117 * 294.07365 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.9263 -1.9386 3.4496 9 14 2.7901 0.2699 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.2991 -0.6485 6.1683 12 1 3.7444 1.3931 4.9372 13 6 2.0401 -0.7212 -1.2493 14 1 1.6761 -1.7486 -1.2509 15 6 1.5336 0.0021 -2.4993 16 6 2.0159 -0.7374 -3.7493 17 6 3.5519 -0.7342 -3.7783 18 7 4.0443 -1.3004 -2.5151 19 6 4.9169 -2.3276 -2.5168 20 8 5.3801 -2.7336 -1.4684 21 6 5.3098 -2.9588 -3.7898 22 6 5.8373 -2.1898 -4.8338 23 6 6.1959 -2.8308 -6.0060 24 6 6.0249 -4.1997 -6.1141 25 7 5.5252 -4.9066 -5.1196 26 6 5.1658 -4.3442 -3.9759 27 7 4.6466 -5.1243 -2.9592 28 6 3.4894 -5.8982 -3.4282 29 6 5.6762 -6.0067 -2.3944 30 6 3.5720 -0.7215 -1.2498 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.2491 -1.6317 1.1526 35 1 3.2503 -2.3956 4.2414 36 1 0.4439 0.0254 -2.4889 37 1 1.9184 1.0219 -2.5096 38 1 1.6521 -1.7646 -3.7274 39 1 1.6354 -0.2350 -4.6386 40 1 3.9160 0.2874 -3.8873 41 1 3.9042 -1.3408 -4.6125 42 1 5.9617 -1.1224 -4.7264 43 1 6.6055 -2.2668 -6.8309 44 1 6.3051 -4.6981 -7.0303 45 1 3.7955 -6.5494 -4.2469 46 1 3.1008 -6.5031 -2.6090 47 1 2.7135 -5.2165 -3.7768 48 1 6.4470 -5.4045 -1.9135 49 1 5.2221 -6.6707 -1.6588 50 1 6.1236 -6.6000 -3.1920 51 1 3.9375 -1.3198 -0.4153 52 1 3.9376 0.3011 -1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496458059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:25 Heat of formation + Delta-G solvation = 33.513351 kcal Electronic energy + Delta-G solvation = -32060.823065 eV Core-core repulsion = 28061.148195 eV Total energy + Delta-G solvation = -3999.674870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.12679 -39.53820 -37.53925 -37.04184 -35.34979 -33.24320 -32.46036 -31.67586 -30.86410 -29.68997 -28.13729 -27.64137 -25.77670 -25.26046 -24.46052 -23.45995 -22.95464 -21.74023 -21.10918 -19.58863 -19.22204 -17.44979 -17.30619 -16.99922 -16.86288 -15.94544 -15.31429 -15.22349 -14.83369 -14.77697 -14.35856 -14.17056 -13.98698 -13.75794 -13.65206 -13.51912 -13.39329 -13.02373 -12.79292 -12.69898 -12.48896 -12.29934 -12.25661 -12.07739 -11.95377 -11.72216 -11.28759 -11.10177 -10.95193 -10.79312 -10.65988 -10.55520 -10.23388 -10.17382 -10.10130 -10.04142 -9.79281 -9.52145 -9.44392 -9.18555 -8.81985 -8.64954 -8.33317 -6.85149 -5.64664 -2.93901 0.59006 0.85772 2.85659 3.13050 3.46495 3.50396 3.53407 3.54564 3.56111 4.16495 4.48325 4.52041 4.65927 4.76480 4.80059 4.87145 4.96482 5.03033 5.18493 5.22446 5.31201 5.32239 5.40232 5.47343 5.49905 5.53485 5.66440 5.69878 5.73756 5.76125 5.79567 5.85250 5.87674 5.94763 5.98675 6.07300 6.11001 6.18206 6.25863 6.28263 6.49837 6.55977 6.59735 6.71882 6.79667 6.84058 6.98599 7.12120 7.16796 7.55179 7.66096 7.78748 8.43822 8.52733 9.63756 10.22162 10.56676 11.57317 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.003240 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.483528 B = 8639.848612 C = 9708.626782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.723 5.723 5 C -0.239 4.239 6 H 0.068 0.932 7 C -0.011 4.011 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.101 3.899 18 N -0.607 5.607 19 C 0.569 3.431 20 O -0.503 6.503 21 C -0.142 4.142 22 C -0.047 4.047 23 C -0.183 4.183 24 C 0.124 3.876 25 N -0.513 5.513 26 C 0.339 3.661 27 N -0.489 5.489 28 C 0.030 3.970 29 C 0.036 3.964 30 C 0.126 3.874 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.158 0.842 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.036 0.964 51 H 0.108 0.892 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -1.902 -24.877 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.371 4.371 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.022 4.022 18 N -0.341 5.341 19 C 0.355 3.645 20 O -0.377 6.377 21 C -0.149 4.149 22 C -0.073 4.073 23 C -0.203 4.203 24 C -0.035 4.035 25 N -0.225 5.225 26 C 0.110 3.890 27 N -0.211 5.211 28 C -0.117 4.117 29 C -0.110 4.110 30 C 0.005 3.995 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.175 0.825 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.055 0.945 51 H 0.126 0.874 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.172 -2.634 -23.812 24.166 hybrid contribution 0.404 0.584 0.286 0.765 sum 3.576 -2.049 -23.526 23.884 Atomic orbital electron populations 1.22480 0.99406 1.00764 0.99791 1.20165 0.91761 0.95208 0.85857 0.93606 1.42439 1.78052 1.10779 1.05231 1.19137 1.36810 0.93718 0.87399 0.91416 1.24727 1.02226 0.95924 0.97903 1.69663 1.50495 1.08579 1.28838 0.86331 0.77624 0.78633 0.83945 1.21462 1.21791 1.21367 1.21753 0.94782 1.00490 0.95188 0.91155 1.21624 1.00997 0.98979 0.93610 1.21977 0.94857 1.01497 0.98720 1.21972 0.95001 0.98772 0.86450 1.48080 1.44543 1.33648 1.07786 1.17714 0.79548 0.79313 0.87954 1.90861 1.53131 1.61681 1.32043 1.20769 1.04030 0.93975 0.96111 1.21761 0.93629 1.00487 0.91449 1.22044 1.03071 0.96225 0.98911 1.22708 0.93056 0.91224 0.96558 1.67831 1.12219 1.41022 1.01468 1.19727 0.91261 0.89777 0.88258 1.59812 1.08528 1.25508 1.27277 1.22398 0.91840 0.97226 1.00205 1.22383 0.94278 0.95443 0.98916 1.21689 0.93752 0.98805 0.85235 0.93638 0.92932 0.94362 0.78119 0.93525 0.91272 0.91916 0.91679 0.91228 0.91369 0.90288 0.83925 0.84068 0.82506 0.93919 0.90376 0.91656 0.90574 0.90332 0.94542 0.87395 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.15 37.16 0.34 -2.61 16 2 C 0.18 3.53 2.47 -67.93 -0.17 3.36 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -18.20 4.52 -53.42 -0.24 -18.45 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 9 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C -0.10 -1.68 1.97 -90.50 -0.18 -1.86 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.41 4.85 -26.69 -0.13 -1.54 16 16 C -0.13 -1.38 6.10 -26.39 -0.16 -1.54 16 17 C 0.10 1.08 5.63 -3.49 -0.02 1.06 16 18 N -0.61 -9.05 2.97 -173.77 -0.52 -9.56 16 19 C 0.57 9.56 6.82 -12.52 -0.09 9.47 16 20 O -0.50 -10.79 16.17 5.28 0.09 -10.71 16 21 C -0.14 -1.92 4.89 -104.65 -0.51 -2.43 16 22 C -0.05 -0.45 7.58 -38.89 -0.29 -0.74 16 23 C -0.18 -1.37 10.09 -39.50 -0.40 -1.76 16 24 C 0.12 1.08 11.16 -17.49 -0.20 0.88 16 25 N -0.51 -6.15 9.42 -12.20 -0.11 -6.27 16 26 C 0.34 4.67 5.35 -155.18 -0.83 3.84 16 27 N -0.49 -7.13 4.11 -188.74 -0.78 -7.90 16 28 C 0.03 0.37 9.38 60.07 0.56 0.93 16 29 C 0.04 0.48 9.56 60.06 0.57 1.06 16 30 C 0.13 2.23 5.46 -3.71 -0.02 2.21 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 34 H 0.38 10.58 7.61 -40.82 -0.31 10.27 16 35 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 0.83 6.36 -51.93 -0.33 0.49 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.74 4.75 -51.93 -0.25 0.49 16 42 H 0.14 1.09 7.46 -52.49 -0.39 0.70 16 43 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.04 0.48 7.74 -51.93 -0.40 0.08 16 46 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 50 H 0.04 0.44 7.91 -51.92 -0.41 0.03 16 51 H 0.11 2.42 6.53 -51.93 -0.34 2.08 16 52 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -34.58 409.63 -10.09 -44.67 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.64 Total: 9.24 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.76 Total: 3.05 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.92 Total: -70.29 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.58 -10.09 -44.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496458059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.182 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds