Wall clock time and date at job start Wed Apr 1 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46851 * 2 1 4 4 N 1.46497 * 109.46946 * 239.99929 * 2 1 3 5 5 C 1.36935 * 119.99662 * 85.28035 * 4 2 1 6 6 H 1.07999 * 120.00491 * 359.71743 * 5 4 2 7 7 C 1.38816 * 119.99438 * 179.72452 * 5 4 2 8 8 N 1.31625 * 119.99560 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00314 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47426 * 90.00317 * 9 7 5 11 11 H 1.48502 * 109.47293 * 210.00258 * 9 7 5 12 12 H 1.48498 * 109.47337 * 330.00137 * 9 7 5 13 13 C 1.53000 * 109.46697 * 119.99720 * 2 1 3 14 14 H 1.09001 * 110.88455 * 179.29825 * 13 2 1 15 15 C 1.55151 * 111.01032 * 303.18099 * 13 2 1 16 16 C 1.54318 * 102.94705 * 153.57640 * 15 13 2 17 17 N 1.47027 * 107.27083 * 337.80868 * 16 15 13 18 18 C 1.34775 * 125.64993 * 178.97443 * 17 16 15 19 19 O 1.21631 * 119.99714 * 175.23397 * 18 17 16 20 20 C 1.47154 * 119.99948 * 355.23312 * 18 17 16 21 21 C 1.38411 * 126.88652 * 5.78928 * 20 18 17 22 22 C 1.39675 * 105.36037 * 180.02562 * 21 20 18 23 23 N 1.30868 * 107.86054 * 0.02562 * 22 21 20 24 24 N 1.28441 * 110.92511 * 359.71667 * 23 22 21 25 25 C 1.46504 * 125.18646 * 180.27938 * 24 23 22 26 26 C 1.54266 * 110.03375 * 62.49955 * 25 24 23 27 27 C 1.54884 * 104.19650 * 217.10616 * 26 25 24 28 28 C 1.54883 * 102.75005 * 37.93999 * 27 26 25 29 29 C 1.53873 * 110.03399 * 305.33229 * 25 24 23 30 30 C 1.47471 * 108.72164 * 358.97235 * 17 16 15 31 31 H 1.09002 * 109.47381 * 300.00389 * 1 2 3 32 32 H 1.09001 * 109.47389 * 60.00098 * 1 2 3 33 33 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 34 34 H 0.96997 * 120.00058 * 264.99751 * 4 2 1 35 35 H 0.97003 * 119.99590 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.71999 * 271.94258 * 15 13 2 37 37 H 1.09006 * 110.71746 * 35.03293 * 15 13 2 38 38 H 1.09006 * 109.88346 * 97.22009 * 16 15 13 39 39 H 1.08999 * 109.88616 * 218.23514 * 16 15 13 40 40 H 1.07999 * 127.31612 * 0.02562 * 21 20 18 41 41 H 1.07996 * 126.06770 * 179.97438 * 22 21 20 42 42 H 1.09003 * 110.01614 * 183.93849 * 25 24 23 43 43 H 1.09005 * 110.48641 * 335.78524 * 26 25 24 44 44 H 1.08999 * 110.48637 * 98.42607 * 26 25 24 45 45 H 1.09006 * 110.75799 * 279.62605 * 27 26 25 46 46 H 1.09002 * 110.75647 * 156.25944 * 27 26 25 47 47 H 1.09004 * 110.48639 * 203.37837 * 28 27 26 48 48 H 1.09006 * 110.59707 * 80.79326 * 28 27 26 49 49 H 1.09001 * 110.03444 * 238.57022 * 29 25 24 50 50 H 1.09005 * 110.02854 * 359.95336 * 29 25 24 51 51 H 1.09001 * 110.35100 * 265.25686 * 30 17 16 52 52 H 1.08997 * 110.40392 * 142.91135 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1545 -0.0061 -2.3743 6 1 1.8976 1.0418 -2.4228 7 6 2.6226 -0.6591 -3.5062 8 7 2.7540 -0.0010 -4.6385 9 14 3.0674 -2.4714 -3.4222 10 1 1.8720 -3.2901 -3.7478 11 1 4.1473 -2.7619 -4.3992 12 1 3.5364 -2.8030 -2.0528 13 6 2.0399 -0.7212 1.2493 14 1 3.1295 -0.7455 1.2665 15 6 1.4779 -0.0657 2.5384 16 6 1.4928 -1.2288 3.5525 17 7 1.4912 -2.4805 2.7811 18 6 1.5213 -3.7235 3.3010 19 8 1.4292 -4.6910 2.5696 20 6 1.6657 -3.9103 4.7535 21 6 1.6701 -2.9214 5.7219 22 6 1.8338 -3.5929 6.9356 23 7 1.9175 -4.8732 6.6779 24 7 1.8178 -5.0947 5.4167 25 6 1.8640 -6.4160 4.7854 26 6 0.6830 -7.2781 5.2770 27 6 1.2760 -8.7043 5.3924 28 6 2.7043 -8.4383 5.9290 29 6 3.1492 -7.1536 5.1999 30 6 1.4511 -2.1510 1.3443 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6317 -1.1526 35 1 3.0807 -0.4575 -5.4297 36 1 2.1251 0.7454 2.8722 37 1 0.4622 0.2953 2.3761 38 1 2.3913 -1.1733 4.1671 39 1 0.6070 -1.1798 4.1858 40 1 1.5684 -1.8568 5.5710 41 1 1.8835 -3.1364 7.9131 42 1 1.8259 -6.3128 3.7009 43 1 0.3352 -6.9298 6.2496 44 1 -0.1302 -7.2606 4.5514 45 1 1.3140 -9.1871 4.4158 46 1 0.7033 -9.3048 6.0992 47 1 3.3663 -9.2674 5.6792 48 1 2.6853 -8.2780 7.0070 49 1 3.7345 -7.4093 4.3166 50 1 3.7390 -6.5282 5.8702 51 1 0.4234 -2.1628 0.9811 52 1 2.0631 -2.8517 0.7765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501051038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:09 Heat of formation + Delta-G solvation = 64.434623 kcal Electronic energy + Delta-G solvation = -31256.105864 eV Core-core repulsion = 27257.771841 eV Total energy + Delta-G solvation = -3998.334023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.82784 -40.08951 -38.30166 -37.97777 -35.46746 -32.87122 -32.40958 -31.34359 -30.66266 -29.19467 -29.15719 -27.93438 -27.88226 -25.06528 -23.92920 -22.51582 -22.30071 -21.61559 -21.11371 -20.84667 -19.17121 -19.06113 -17.87257 -17.34284 -16.69351 -16.42385 -16.07843 -15.77379 -15.56692 -14.91499 -14.59321 -14.50788 -14.28354 -13.97414 -13.83672 -13.73185 -13.63709 -13.09705 -12.90371 -12.78423 -12.41735 -12.35237 -12.22452 -11.98435 -11.79667 -11.55663 -11.50639 -11.37460 -11.31291 -11.08539 -10.98176 -10.94705 -10.84293 -10.61002 -10.46817 -10.32226 -10.06155 -9.94009 -9.59963 -9.40514 -9.20930 -8.96285 -8.71451 -7.30853 -5.78831 -3.14789 1.08160 2.09275 2.42009 2.89697 3.03617 3.37828 3.41521 3.46246 4.03037 4.12979 4.15223 4.47268 4.50219 4.57365 4.58130 4.65363 4.85520 4.91501 4.98941 5.03545 5.08083 5.09859 5.17678 5.24656 5.27430 5.37526 5.40878 5.44741 5.50491 5.51289 5.52586 5.56013 5.61295 5.65781 5.75377 5.78836 5.81740 5.85081 5.94037 5.98937 6.02005 6.10062 6.22188 6.30563 6.39203 6.49144 6.57746 6.70108 6.98191 7.29499 7.82773 7.95653 7.96853 8.40084 9.18126 9.90948 10.09709 11.39365 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002734 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.004739 B =10238.172684 C =11761.488105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.190 3.810 3 H 0.062 0.938 4 N -0.749 5.749 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.086 0.914 15 C -0.132 4.132 16 C 0.093 3.907 17 N -0.599 5.599 18 C 0.601 3.399 19 O -0.543 6.543 20 C -0.032 4.032 21 C -0.201 4.201 22 C -0.009 4.009 23 N -0.274 5.274 24 N -0.248 5.248 25 C 0.128 3.872 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.130 4.130 30 C 0.108 3.892 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.169 0.831 41 H 0.185 0.815 42 H 0.139 0.861 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.084 0.916 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -9.503 26.702 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.080 3.920 3 H 0.080 0.920 4 N -0.392 5.392 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.105 0.895 15 C -0.170 4.170 16 C -0.029 4.029 17 N -0.331 5.331 18 C 0.389 3.611 19 O -0.421 6.421 20 C -0.160 4.160 21 C -0.229 4.229 22 C -0.185 4.185 23 N -0.107 5.107 24 N -0.035 5.035 25 C 0.028 3.972 26 C -0.167 4.167 27 C -0.159 4.159 28 C -0.158 4.158 29 C -0.169 4.169 30 C -0.013 4.013 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.187 0.813 41 H 0.202 0.798 42 H 0.156 0.844 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.095 0.905 51 H 0.102 0.898 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.954 -11.089 26.570 28.943 hybrid contribution 0.272 -0.392 -0.400 0.623 sum -2.682 -11.482 26.170 28.703 Atomic orbital electron populations 1.22596 0.98886 1.01067 1.00689 1.20051 0.92055 0.95647 0.84220 0.91957 1.42806 1.79728 1.09423 1.07224 1.19053 1.36974 0.95615 0.85665 0.89101 1.24659 1.01325 0.97401 0.95614 1.69701 1.52467 1.35530 1.00402 0.86611 0.78266 0.86914 0.77101 1.20989 1.21715 1.20358 1.22767 1.00864 0.93465 0.95556 0.89514 1.22860 1.03262 0.96630 0.94218 1.22468 1.01757 0.83563 0.95157 1.48153 1.71615 1.04529 1.08818 1.16521 0.77197 0.82341 0.85043 1.90744 1.51656 1.38620 1.61102 1.21342 1.13233 0.87450 0.94014 1.22782 1.08207 1.00316 0.91626 1.23586 1.06177 0.89097 0.99631 1.73108 1.19415 1.20428 0.97722 1.45960 1.48161 1.06473 1.02953 1.22883 0.97178 0.77308 0.99837 1.22719 0.96696 0.94910 1.02391 1.22469 0.95989 0.95776 1.01689 1.22326 0.96434 0.96643 1.00352 1.22480 0.95948 0.97100 1.01327 1.22590 1.02547 0.96837 0.79348 0.93695 0.92141 0.93235 0.80654 0.93051 0.89646 0.89374 0.90653 0.90746 0.81348 0.79825 0.84397 0.90206 0.90530 0.90844 0.90816 0.91138 0.91053 0.90327 0.90462 0.89824 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 8.85 37.16 0.33 -2.38 16 2 C 0.19 3.27 2.84 -67.93 -0.19 3.08 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 N -0.75 -16.84 4.87 -53.43 -0.26 -17.10 16 5 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 9 Si 0.88 22.21 27.73 -169.99 -4.71 17.50 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 13 C -0.11 -1.47 3.07 -88.47 -0.27 -1.75 16 14 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.13 -1.28 6.31 -24.90 -0.16 -1.44 16 16 C 0.09 0.87 5.01 -3.06 -0.02 0.86 16 17 N -0.60 -7.86 3.33 -171.84 -0.57 -8.44 16 18 C 0.60 8.84 7.82 -12.64 -0.10 8.75 16 19 O -0.54 -9.47 14.71 5.25 0.08 -9.39 16 20 C -0.03 -0.41 6.92 -82.06 -0.57 -0.98 16 21 C -0.20 -2.01 9.43 -38.98 -0.37 -2.38 16 22 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 23 N -0.27 -3.23 11.04 30.59 0.34 -2.89 16 24 N -0.25 -3.07 3.06 -49.61 -0.15 -3.22 16 25 C 0.13 1.45 3.58 -66.81 -0.24 1.21 16 26 C -0.13 -1.23 6.51 -25.08 -0.16 -1.39 16 27 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 28 C -0.12 -0.91 6.83 -25.08 -0.17 -1.08 16 29 C -0.13 -1.24 6.47 -25.62 -0.17 -1.41 16 30 C 0.11 1.60 5.67 -2.50 -0.01 1.59 16 31 H 0.04 0.56 6.07 -51.93 -0.32 0.24 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.78 6.04 -51.93 -0.31 0.47 16 34 H 0.36 8.16 4.93 -40.82 -0.20 7.96 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.82 5.74 -51.93 -0.30 0.52 16 38 H 0.08 0.61 6.77 -51.93 -0.35 0.26 16 39 H 0.07 0.58 7.13 -51.93 -0.37 0.21 16 40 H 0.17 1.24 4.66 -52.49 -0.24 1.00 16 41 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.14 1.82 5.40 -51.93 -0.28 1.53 16 43 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.82 7.62 -51.93 -0.40 0.42 16 51 H 0.08 1.27 5.66 -51.93 -0.29 0.98 16 52 H 0.08 1.34 7.84 -51.93 -0.41 0.93 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -33.34 395.03 -9.40 -42.74 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.11 Total: 8.55 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.73 Total: -5.43 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.13 Total: -59.91 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.34 -9.40 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501051038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.171 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds