Wall clock time and date at job start Wed Apr 1 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46851 * 2 1 4 4 N 1.46497 * 109.46946 * 239.99929 * 2 1 3 5 5 C 1.36935 * 119.99662 * 85.28035 * 4 2 1 6 6 H 1.07999 * 120.00491 * 359.71743 * 5 4 2 7 7 C 1.38816 * 119.99438 * 179.72452 * 5 4 2 8 8 N 1.31625 * 119.99560 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00314 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47426 * 90.00317 * 9 7 5 11 11 H 1.48502 * 109.47293 * 210.00258 * 9 7 5 12 12 H 1.48498 * 109.47337 * 330.00137 * 9 7 5 13 13 C 1.53000 * 109.46697 * 119.99720 * 2 1 3 14 14 H 1.09001 * 110.88455 * 179.29825 * 13 2 1 15 15 C 1.55151 * 111.01032 * 303.18099 * 13 2 1 16 16 C 1.54318 * 102.94705 * 153.57640 * 15 13 2 17 17 N 1.47027 * 107.27083 * 337.80868 * 16 15 13 18 18 C 1.34775 * 125.64993 * 178.97443 * 17 16 15 19 19 O 1.21631 * 119.99714 * 175.23397 * 18 17 16 20 20 C 1.47154 * 119.99948 * 355.23312 * 18 17 16 21 21 C 1.38411 * 126.88652 * 5.78928 * 20 18 17 22 22 C 1.39675 * 105.36037 * 180.02562 * 21 20 18 23 23 N 1.30868 * 107.86054 * 0.02562 * 22 21 20 24 24 N 1.28441 * 110.92511 * 359.71667 * 23 22 21 25 25 C 1.46504 * 125.18646 * 180.27938 * 24 23 22 26 26 C 1.54266 * 110.03375 * 62.49955 * 25 24 23 27 27 C 1.54884 * 104.19650 * 217.10616 * 26 25 24 28 28 C 1.54883 * 102.75005 * 37.93999 * 27 26 25 29 29 C 1.53873 * 110.03399 * 305.33229 * 25 24 23 30 30 C 1.47471 * 108.72164 * 358.97235 * 17 16 15 31 31 H 1.09002 * 109.47381 * 300.00389 * 1 2 3 32 32 H 1.09001 * 109.47389 * 60.00098 * 1 2 3 33 33 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 34 34 H 0.96997 * 120.00058 * 264.99751 * 4 2 1 35 35 H 0.97003 * 119.99590 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.71999 * 271.94258 * 15 13 2 37 37 H 1.09006 * 110.71746 * 35.03293 * 15 13 2 38 38 H 1.09006 * 109.88346 * 97.22009 * 16 15 13 39 39 H 1.08999 * 109.88616 * 218.23514 * 16 15 13 40 40 H 1.07999 * 127.31612 * 0.02562 * 21 20 18 41 41 H 1.07996 * 126.06770 * 179.97438 * 22 21 20 42 42 H 1.09003 * 110.01614 * 183.93849 * 25 24 23 43 43 H 1.09005 * 110.48641 * 335.78524 * 26 25 24 44 44 H 1.08999 * 110.48637 * 98.42607 * 26 25 24 45 45 H 1.09006 * 110.75799 * 279.62605 * 27 26 25 46 46 H 1.09002 * 110.75647 * 156.25944 * 27 26 25 47 47 H 1.09004 * 110.48639 * 203.37837 * 28 27 26 48 48 H 1.09006 * 110.59707 * 80.79326 * 28 27 26 49 49 H 1.09001 * 110.03444 * 238.57022 * 29 25 24 50 50 H 1.09005 * 110.02854 * 359.95336 * 29 25 24 51 51 H 1.09001 * 110.35100 * 265.25686 * 30 17 16 52 52 H 1.08997 * 110.40392 * 142.91135 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1545 -0.0061 -2.3743 6 1 1.8976 1.0418 -2.4228 7 6 2.6226 -0.6591 -3.5062 8 7 2.7540 -0.0010 -4.6385 9 14 3.0674 -2.4714 -3.4222 10 1 1.8720 -3.2901 -3.7478 11 1 4.1473 -2.7619 -4.3992 12 1 3.5364 -2.8030 -2.0528 13 6 2.0399 -0.7212 1.2493 14 1 3.1295 -0.7455 1.2665 15 6 1.4779 -0.0657 2.5384 16 6 1.4928 -1.2288 3.5525 17 7 1.4912 -2.4805 2.7811 18 6 1.5213 -3.7235 3.3010 19 8 1.4292 -4.6910 2.5696 20 6 1.6657 -3.9103 4.7535 21 6 1.6701 -2.9214 5.7219 22 6 1.8338 -3.5929 6.9356 23 7 1.9175 -4.8732 6.6779 24 7 1.8178 -5.0947 5.4167 25 6 1.8640 -6.4160 4.7854 26 6 0.6830 -7.2781 5.2770 27 6 1.2760 -8.7043 5.3924 28 6 2.7043 -8.4383 5.9290 29 6 3.1492 -7.1536 5.1999 30 6 1.4511 -2.1510 1.3443 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6317 -1.1526 35 1 3.0807 -0.4575 -5.4297 36 1 2.1251 0.7454 2.8722 37 1 0.4622 0.2953 2.3761 38 1 2.3913 -1.1733 4.1671 39 1 0.6070 -1.1798 4.1858 40 1 1.5684 -1.8568 5.5710 41 1 1.8835 -3.1364 7.9131 42 1 1.8259 -6.3128 3.7009 43 1 0.3352 -6.9298 6.2496 44 1 -0.1302 -7.2606 4.5514 45 1 1.3140 -9.1871 4.4158 46 1 0.7033 -9.3048 6.0992 47 1 3.3663 -9.2674 5.6792 48 1 2.6853 -8.2780 7.0070 49 1 3.7345 -7.4093 4.3166 50 1 3.7390 -6.5282 5.8702 51 1 0.4234 -2.1628 0.9811 52 1 2.0631 -2.8517 0.7765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501051038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:07 Heat of formation + Delta-G solvation = 43.596680 kcal Electronic energy + Delta-G solvation = -31257.009465 eV Core-core repulsion = 27257.771841 eV Total energy + Delta-G solvation = -3999.237624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.65684 -41.14798 -39.24858 -38.94665 -36.94666 -34.48858 -33.30533 -32.73399 -31.76516 -30.55135 -29.87354 -29.06544 -28.66697 -26.30677 -25.49808 -23.50817 -23.29187 -22.71087 -21.80845 -21.73026 -20.51855 -20.06144 -19.55106 -18.38864 -17.64817 -17.56847 -16.85274 -16.70805 -16.67979 -16.42527 -15.85453 -15.55253 -15.39059 -14.96384 -14.88971 -14.77509 -14.48298 -14.44556 -14.25419 -14.08770 -13.82140 -13.58068 -13.25775 -12.97228 -12.86677 -12.73201 -12.59381 -12.31844 -12.22783 -12.17614 -12.15833 -12.10140 -11.93875 -11.76583 -11.68718 -11.60274 -11.51353 -11.40081 -11.07093 -10.96271 -10.30487 -10.00111 -9.73535 -9.31291 -8.02738 -5.33933 0.16421 1.22150 1.34656 1.36194 1.42009 1.64937 1.94327 2.05681 2.45687 3.17787 3.29205 3.29720 3.42980 3.48468 3.59242 3.76489 3.83706 3.88513 3.99301 4.11512 4.24551 4.26116 4.31940 4.33648 4.34078 4.39349 4.46661 4.53270 4.60358 4.61682 4.63298 4.70250 4.75264 4.84492 4.87876 4.88465 4.93241 5.01857 5.05021 5.07934 5.10240 5.11255 5.21554 5.29889 5.32101 5.40386 5.57275 5.66944 5.76259 5.80225 6.22285 6.29464 6.82710 7.08719 7.09512 7.86808 8.02405 9.19008 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002734 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.004739 B =10238.172684 C =11761.488105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.755 5.755 5 C -0.218 4.218 6 H 0.065 0.935 7 C -0.062 4.062 8 N -0.983 5.983 9 Si 0.942 3.058 10 H -0.283 1.283 11 H -0.296 1.296 12 H -0.260 1.260 13 C -0.099 4.099 14 H 0.079 0.921 15 C -0.118 4.118 16 C 0.088 3.912 17 N -0.597 5.597 18 C 0.593 3.407 19 O -0.585 6.585 20 C -0.062 4.062 21 C -0.182 4.182 22 C -0.008 4.008 23 N -0.289 5.289 24 N -0.258 5.258 25 C 0.122 3.878 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.113 4.113 29 C -0.127 4.127 30 C 0.109 3.891 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.360 0.640 35 H 0.256 0.744 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.200 0.800 41 H 0.221 0.779 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.079 0.921 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -9.402 30.730 32.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.075 3.925 3 H 0.078 0.922 4 N -0.398 5.398 5 C -0.349 4.349 6 H 0.083 0.917 7 C -0.253 4.253 8 N -0.634 5.634 9 Si 0.771 3.229 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.185 1.185 13 C -0.119 4.119 14 H 0.097 0.903 15 C -0.156 4.156 16 C -0.033 4.033 17 N -0.328 5.328 18 C 0.383 3.617 19 O -0.466 6.466 20 C -0.189 4.189 21 C -0.210 4.210 22 C -0.183 4.183 23 N -0.122 5.122 24 N -0.046 5.046 25 C 0.021 3.979 26 C -0.163 4.163 27 C -0.153 4.153 28 C -0.151 4.151 29 C -0.165 4.165 30 C -0.013 4.013 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.193 0.807 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.217 0.783 41 H 0.237 0.763 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.292 -10.962 30.680 32.746 hybrid contribution 0.324 -0.294 -1.563 1.623 sum -2.968 -11.256 29.118 31.358 Atomic orbital electron populations 1.22467 0.97268 1.01160 1.01441 1.20324 0.93048 0.95447 0.83697 0.92193 1.42923 1.79925 1.09470 1.07510 1.19067 1.34025 0.94637 0.87185 0.91675 1.25351 1.02914 1.01511 0.95546 1.69857 1.55044 1.37295 1.01226 0.85607 0.77669 0.82030 0.77639 1.20992 1.22269 1.18536 1.22563 1.00395 0.92936 0.95966 0.90255 1.22885 1.04131 0.97169 0.91432 1.22792 1.04089 0.81294 0.95126 1.48183 1.70864 1.05404 1.08367 1.16896 0.76709 0.82252 0.85888 1.90720 1.53621 1.40045 1.62257 1.21337 1.15596 0.88670 0.93332 1.23177 1.05938 1.01193 0.90717 1.24266 1.04612 0.88330 1.01075 1.73106 1.19832 1.21853 0.97403 1.46042 1.48798 1.06587 1.03192 1.22874 0.98661 0.77754 0.98601 1.22677 0.96021 0.96008 1.01570 1.22478 0.95895 0.94560 1.02414 1.22308 0.96689 0.95997 1.00097 1.22460 0.95089 0.97728 1.01252 1.22419 1.01639 0.96742 0.80481 0.89483 0.94865 0.93474 0.80715 0.93504 0.86945 0.88266 0.88613 0.87996 0.78346 0.76279 0.86928 0.90802 0.91287 0.90431 0.89206 0.89569 0.90915 0.90391 0.91552 0.90304 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 8.85 71.98 0.64 -4.25 16 2 C 0.18 6.07 2.84 44.99 0.13 6.20 16 3 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 4 N -0.76 -33.97 4.87 -322.94 -1.57 -35.54 16 5 C -0.22 -12.12 10.41 84.03 0.87 -11.25 16 6 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 7 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 8 N -0.98 -63.15 13.97 21.65 0.30 -62.85 16 9 Si 0.94 46.99 27.73 68.60 1.90 48.89 16 10 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 12 H -0.26 -12.05 6.52 99.48 0.65 -11.41 16 13 C -0.10 -2.53 3.07 -9.40 -0.03 -2.56 16 14 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.12 -1.78 6.31 31.78 0.20 -1.58 16 16 C 0.09 1.27 5.01 86.73 0.43 1.70 16 17 N -0.60 -14.65 3.33 -815.83 -2.71 -17.37 16 18 C 0.59 17.26 7.82 86.58 0.68 17.94 16 19 O -0.58 -21.26 14.71 -4.13 -0.06 -21.32 16 20 C -0.06 -1.50 6.92 40.79 0.28 -1.22 16 21 C -0.18 -3.00 9.43 22.66 0.21 -2.78 16 22 C -0.01 -0.12 12.03 85.18 1.02 0.90 16 23 N -0.29 -6.30 11.04 -57.14 -0.63 -6.93 16 24 N -0.26 -6.24 3.06 -310.88 -0.95 -7.19 16 25 C 0.12 2.80 3.58 45.71 0.16 2.96 16 26 C -0.12 -2.37 6.51 31.67 0.21 -2.16 16 27 C -0.12 -1.59 6.91 31.88 0.22 -1.37 16 28 C -0.11 -1.58 6.83 31.67 0.22 -1.36 16 29 C -0.13 -2.42 6.47 31.32 0.20 -2.21 16 30 C 0.11 3.16 5.67 86.85 0.49 3.66 16 31 H 0.09 1.85 6.07 -2.39 -0.01 1.84 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.43 6.04 -2.39 -0.01 1.41 16 34 H 0.36 16.26 4.93 -92.71 -0.46 15.81 16 35 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.32 5.74 -2.38 -0.01 1.30 16 38 H 0.10 1.06 6.77 -2.38 -0.02 1.04 16 39 H 0.10 1.00 7.13 -2.39 -0.02 0.99 16 40 H 0.20 1.84 4.66 -2.91 -0.01 1.83 16 41 H 0.22 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.11 3.18 5.40 -2.39 -0.01 3.17 16 43 H 0.07 1.48 7.77 -2.38 -0.02 1.46 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.07 1.39 7.62 -2.38 -0.02 1.37 16 51 H 0.08 2.34 5.66 -2.39 -0.01 2.33 16 52 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 Total: -1.00 -77.05 395.03 3.11 -73.94 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.42 Total: 28.95 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.41 Total: -0.58 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -5.57 Total: -129.89 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.32 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.90 Total: 48.89 kcal Total: -77.05 3.11 -73.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501051038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.541 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds