Wall clock time and date at job start Wed Apr 1 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47226 * 2 1 4 4 N 1.46490 * 109.47062 * 120.00535 * 2 1 3 5 5 C 1.36943 * 120.00041 * 274.99185 * 4 2 1 6 6 H 1.07996 * 119.99576 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00270 * 179.97438 * 5 4 2 8 8 N 1.31627 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00220 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46563 * 60.00738 * 9 7 5 11 11 H 1.48496 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47277 * 300.00695 * 9 7 5 13 13 C 1.53006 * 109.46721 * 240.00434 * 2 1 3 14 14 H 1.09003 * 110.88426 * 302.42695 * 13 2 1 15 15 C 1.55158 * 111.00476 * 66.34876 * 13 2 1 16 16 C 1.54337 * 103.01881 * 153.38082 * 15 13 2 17 17 N 1.47023 * 107.26456 * 338.14105 * 16 15 13 18 18 C 1.34770 * 125.64696 * 178.84570 * 17 16 15 19 19 O 1.21633 * 120.00126 * 184.81031 * 18 17 16 20 20 C 1.47165 * 120.00282 * 4.81918 * 18 17 16 21 21 C 1.38414 * 126.87895 * 354.33161 * 20 18 17 22 22 C 1.39673 * 105.35575 * 180.02562 * 21 20 18 23 23 N 1.30866 * 107.86279 * 0.02562 * 22 21 20 24 24 N 1.28445 * 110.92765 * 359.71058 * 23 22 21 25 25 C 1.46493 * 125.18920 * 180.29640 * 24 23 22 26 26 C 1.54265 * 110.03265 * 62.39765 * 25 24 23 27 27 C 1.54895 * 104.19711 * 217.10335 * 26 25 24 28 28 C 1.54888 * 102.74532 * 37.93933 * 27 26 25 29 29 C 1.53877 * 110.03684 * 305.22915 * 25 24 23 30 30 C 1.47420 * 108.70546 * 358.58811 * 17 16 15 31 31 H 1.09011 * 109.47027 * 299.99839 * 1 2 3 32 32 H 1.09003 * 109.47341 * 59.99547 * 1 2 3 33 33 H 1.08995 * 109.47745 * 179.97438 * 1 2 3 34 34 H 0.97002 * 120.00662 * 94.99938 * 4 2 1 35 35 H 0.96995 * 119.99782 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.71873 * 271.93592 * 15 13 2 37 37 H 1.08995 * 110.71874 * 35.03507 * 15 13 2 38 38 H 1.09000 * 109.98934 * 218.66619 * 16 15 13 39 39 H 1.09002 * 109.77623 * 97.49170 * 16 15 13 40 40 H 1.07991 * 127.32180 * 359.97245 * 21 20 18 41 41 H 1.08001 * 126.06635 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.01733 * 183.83866 * 25 24 23 43 43 H 1.09000 * 110.48856 * 335.78299 * 26 25 24 44 44 H 1.09004 * 110.48649 * 98.42613 * 26 25 24 45 45 H 1.08998 * 110.75297 * 279.62485 * 27 26 25 46 46 H 1.08998 * 110.75139 * 156.25678 * 27 26 25 47 47 H 1.08998 * 110.48446 * 203.37779 * 28 27 26 48 48 H 1.09001 * 110.59621 * 80.79884 * 28 27 26 49 49 H 1.08997 * 110.03222 * 238.56990 * 29 25 24 50 50 H 1.09005 * 110.02981 * 359.95164 * 29 25 24 51 51 H 1.09000 * 110.37241 * 143.19469 * 30 17 16 52 52 H 1.09007 * 110.36527 * 265.41016 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1493 -0.0076 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6114 -0.6621 3.5092 8 7 2.9243 -1.9393 3.4500 9 14 2.7894 0.2695 5.1185 10 1 1.4668 0.8062 5.5284 11 1 3.2984 -0.6490 6.1684 12 1 3.7446 1.3919 4.9377 13 6 2.0399 -0.7212 -1.2494 14 1 1.6546 -1.7398 -1.2945 15 6 1.6774 0.0689 -2.5345 16 6 2.7786 -0.3587 -3.5278 17 7 3.9163 -0.8464 -2.7346 18 6 5.0704 -1.3322 -3.2328 19 8 5.9117 -1.7899 -2.4830 20 6 5.3130 -1.3087 -4.6842 21 6 4.4197 -0.9257 -5.6696 22 6 5.1105 -1.0767 -6.8741 23 7 6.3118 -1.5150 -6.5956 24 7 6.4663 -1.6562 -5.3284 25 6 7.6914 -2.1222 -4.6741 26 6 8.8464 -1.1383 -4.9529 27 6 10.0892 -2.0482 -5.1171 28 6 9.5185 -3.2727 -5.8748 29 6 8.1187 -3.4792 -5.2602 30 6 3.5880 -0.7103 -1.3038 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 3.2476 -2.3966 4.2419 36 1 0.6920 -0.2201 -2.8998 37 1 1.7199 1.1426 -2.3519 38 1 3.0867 0.4943 -4.1324 39 1 2.4059 -1.1562 -4.1707 40 1 3.4041 -0.5838 -5.5357 41 1 4.7220 -0.8694 -7.8602 42 1 7.5291 -2.2138 -3.6001 43 1 8.6588 -0.5797 -5.8699 44 1 8.9800 -0.4584 -4.1114 45 1 10.4822 -2.3445 -4.1446 46 1 10.8566 -1.5505 -5.7098 47 1 10.1424 -4.1503 -5.7062 48 1 9.4396 -3.0611 -6.9411 49 1 8.1646 -4.2292 -4.4706 50 1 7.4141 -3.7916 -6.0310 51 1 3.9934 -1.5505 -0.7399 52 1 3.9763 0.2304 -0.9133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501051039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:15 Heat of formation + Delta-G solvation = 54.968346 kcal Electronic energy + Delta-G solvation = -31058.675162 eV Core-core repulsion = 27059.930651 eV Total energy + Delta-G solvation = -3998.744512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.73450 -39.86246 -38.20806 -37.72581 -35.30080 -32.77404 -32.32888 -31.27142 -30.41132 -29.08242 -28.59609 -28.10426 -27.83133 -24.57072 -23.95008 -22.45253 -21.96312 -21.62037 -21.03325 -20.51551 -19.69077 -19.02332 -17.60641 -16.98692 -16.51603 -16.29833 -15.92214 -15.61886 -15.40806 -14.80437 -14.64751 -14.37796 -14.06848 -13.78168 -13.67339 -13.62203 -13.48974 -13.06870 -12.70293 -12.66177 -12.21361 -12.11054 -12.07017 -11.89500 -11.56086 -11.47475 -11.43512 -11.37233 -11.23140 -10.90666 -10.89094 -10.80202 -10.76612 -10.60259 -10.55450 -10.25143 -9.95728 -9.83276 -9.62293 -9.30965 -9.12142 -8.91223 -8.59582 -6.96871 -5.75672 -3.05013 1.19123 2.19921 2.50448 3.04125 3.16951 3.44349 3.48948 3.50019 4.11709 4.22901 4.25907 4.55715 4.57543 4.62179 4.65723 4.86295 4.94651 5.01510 5.07482 5.11939 5.16577 5.19259 5.29407 5.33053 5.39253 5.48086 5.52548 5.54544 5.57754 5.60097 5.63632 5.73139 5.83317 5.86038 5.86664 5.90237 5.93607 6.01592 6.02647 6.13861 6.24574 6.31191 6.36589 6.40034 6.53194 6.61043 6.66883 6.83291 7.05674 7.46055 7.69757 7.93945 8.09321 8.42293 9.53601 10.10100 10.44404 11.46684 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002576 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.863367 B =10867.528459 C =12540.671643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.126 4.126 16 C 0.093 3.907 17 N -0.600 5.600 18 C 0.600 3.400 19 O -0.539 6.539 20 C -0.030 4.030 21 C -0.202 4.202 22 C -0.010 4.010 23 N -0.276 5.276 24 N -0.248 5.248 25 C 0.127 3.873 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.129 4.129 30 C 0.122 3.878 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.140 0.860 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 1.390 -23.543 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.164 4.164 16 C -0.030 4.030 17 N -0.333 5.333 18 C 0.388 3.612 19 O -0.418 6.418 20 C -0.158 4.158 21 C -0.231 4.231 22 C -0.186 4.186 23 N -0.108 5.108 24 N -0.035 5.035 25 C 0.027 3.973 26 C -0.168 4.168 27 C -0.159 4.159 28 C -0.158 4.158 29 C -0.167 4.167 30 C 0.001 3.999 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.186 0.814 41 H 0.201 0.799 42 H 0.158 0.842 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.095 0.905 51 H 0.106 0.894 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.167 0.859 -23.419 24.507 hybrid contribution -0.810 0.422 1.209 1.515 sum 6.358 1.281 -22.210 23.138 Atomic orbital electron populations 1.22441 0.99036 1.00913 1.00012 1.20155 0.91951 0.95139 0.85298 0.93271 1.42414 1.78178 1.10722 1.05267 1.19146 1.36823 0.93788 0.87298 0.91286 1.24729 1.02107 0.95936 0.98012 1.69647 1.50660 1.08627 1.28997 0.86304 0.77721 0.78640 0.83722 1.21338 1.21750 1.21295 1.22684 0.93806 1.00437 0.95247 0.89974 1.22728 0.97693 1.01189 0.94832 1.22455 0.86700 0.98921 0.94889 1.48190 1.14562 1.61353 1.09210 1.16508 0.81433 0.78260 0.85043 1.90754 1.44388 1.46833 1.59793 1.21402 0.89693 1.10496 0.94243 1.22770 1.01438 1.07411 0.91495 1.23568 0.90668 1.04673 0.99671 1.73096 1.21650 1.18881 0.97198 1.45953 1.10462 1.44302 1.02827 1.22902 0.80293 0.94670 0.99430 1.22736 0.93502 0.97669 1.02938 1.22468 0.96720 0.95800 1.00921 1.22325 0.95113 0.98264 1.00057 1.22461 0.97961 0.95275 1.01016 1.22344 0.95416 1.03414 0.78713 0.92747 0.94373 0.93499 0.78250 0.93456 0.89830 0.90206 0.90815 0.90898 0.81407 0.79908 0.84223 0.90227 0.90557 0.90806 0.90867 0.91164 0.91115 0.90255 0.90524 0.89431 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.34 37.16 0.35 -2.35 16 2 C 0.18 3.34 2.41 -67.93 -0.16 3.17 16 3 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 4 N -0.72 -17.22 4.82 -53.43 -0.26 -17.48 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 9 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 C -0.10 -1.50 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.13 -1.34 5.59 -24.89 -0.14 -1.48 16 16 C 0.09 0.96 5.00 -3.06 -0.02 0.95 16 17 N -0.60 -8.62 3.33 -171.87 -0.57 -9.19 16 18 C 0.60 9.53 7.82 -12.64 -0.10 9.43 16 19 O -0.54 -10.20 14.63 5.25 0.08 -10.12 16 20 C -0.03 -0.41 6.92 -82.06 -0.57 -0.98 16 21 C -0.20 -2.18 9.44 -38.98 -0.37 -2.55 16 22 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 23 N -0.28 -3.42 11.04 30.59 0.34 -3.08 16 24 N -0.25 -3.26 3.06 -49.61 -0.15 -3.41 16 25 C 0.13 1.54 3.60 -66.82 -0.24 1.29 16 26 C -0.13 -1.33 6.51 -25.07 -0.16 -1.50 16 27 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 28 C -0.12 -0.98 6.83 -25.08 -0.17 -1.15 16 29 C -0.13 -1.32 6.47 -25.61 -0.17 -1.48 16 30 C 0.12 2.03 6.11 -2.53 -0.02 2.01 16 31 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.38 9.86 7.80 -40.82 -0.32 9.55 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 37 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 38 H 0.07 0.64 6.93 -51.93 -0.36 0.29 16 39 H 0.07 0.65 6.99 -51.93 -0.36 0.29 16 40 H 0.17 1.37 4.66 -52.49 -0.24 1.12 16 41 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.14 1.98 5.37 -51.93 -0.28 1.70 16 43 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.86 7.62 -51.93 -0.40 0.46 16 51 H 0.09 1.72 7.99 -51.93 -0.41 1.31 16 52 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -32.24 406.16 -9.98 -42.22 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.61 Total: 9.73 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.62 Total: -4.83 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.08 Total: -60.36 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.24 -9.98 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501051039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.192 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds