Wall clock time and date at job start Wed Apr 1 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47226 * 2 1 4 4 N 1.46490 * 109.47062 * 120.00535 * 2 1 3 5 5 C 1.36943 * 120.00041 * 274.99185 * 4 2 1 6 6 H 1.07996 * 119.99576 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00270 * 179.97438 * 5 4 2 8 8 N 1.31627 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00220 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46563 * 60.00738 * 9 7 5 11 11 H 1.48496 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47277 * 300.00695 * 9 7 5 13 13 C 1.53006 * 109.46721 * 240.00434 * 2 1 3 14 14 H 1.09003 * 110.88426 * 302.42695 * 13 2 1 15 15 C 1.55158 * 111.00476 * 66.34876 * 13 2 1 16 16 C 1.54337 * 103.01881 * 153.38082 * 15 13 2 17 17 N 1.47023 * 107.26456 * 338.14105 * 16 15 13 18 18 C 1.34770 * 125.64696 * 178.84570 * 17 16 15 19 19 O 1.21633 * 120.00126 * 184.81031 * 18 17 16 20 20 C 1.47165 * 120.00282 * 4.81918 * 18 17 16 21 21 C 1.38414 * 126.87895 * 354.33161 * 20 18 17 22 22 C 1.39673 * 105.35575 * 180.02562 * 21 20 18 23 23 N 1.30866 * 107.86279 * 0.02562 * 22 21 20 24 24 N 1.28445 * 110.92765 * 359.71058 * 23 22 21 25 25 C 1.46493 * 125.18920 * 180.29640 * 24 23 22 26 26 C 1.54265 * 110.03265 * 62.39765 * 25 24 23 27 27 C 1.54895 * 104.19711 * 217.10335 * 26 25 24 28 28 C 1.54888 * 102.74532 * 37.93933 * 27 26 25 29 29 C 1.53877 * 110.03684 * 305.22915 * 25 24 23 30 30 C 1.47420 * 108.70546 * 358.58811 * 17 16 15 31 31 H 1.09011 * 109.47027 * 299.99839 * 1 2 3 32 32 H 1.09003 * 109.47341 * 59.99547 * 1 2 3 33 33 H 1.08995 * 109.47745 * 179.97438 * 1 2 3 34 34 H 0.97002 * 120.00662 * 94.99938 * 4 2 1 35 35 H 0.96995 * 119.99782 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.71873 * 271.93592 * 15 13 2 37 37 H 1.08995 * 110.71874 * 35.03507 * 15 13 2 38 38 H 1.09000 * 109.98934 * 218.66619 * 16 15 13 39 39 H 1.09002 * 109.77623 * 97.49170 * 16 15 13 40 40 H 1.07991 * 127.32180 * 359.97245 * 21 20 18 41 41 H 1.08001 * 126.06635 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.01733 * 183.83866 * 25 24 23 43 43 H 1.09000 * 110.48856 * 335.78299 * 26 25 24 44 44 H 1.09004 * 110.48649 * 98.42613 * 26 25 24 45 45 H 1.08998 * 110.75297 * 279.62485 * 27 26 25 46 46 H 1.08998 * 110.75139 * 156.25678 * 27 26 25 47 47 H 1.08998 * 110.48446 * 203.37779 * 28 27 26 48 48 H 1.09001 * 110.59621 * 80.79884 * 28 27 26 49 49 H 1.08997 * 110.03222 * 238.56990 * 29 25 24 50 50 H 1.09005 * 110.02981 * 359.95164 * 29 25 24 51 51 H 1.09000 * 110.37241 * 143.19469 * 30 17 16 52 52 H 1.09007 * 110.36527 * 265.41016 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1493 -0.0076 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6114 -0.6621 3.5092 8 7 2.9243 -1.9393 3.4500 9 14 2.7894 0.2695 5.1185 10 1 1.4668 0.8062 5.5284 11 1 3.2984 -0.6490 6.1684 12 1 3.7446 1.3919 4.9377 13 6 2.0399 -0.7212 -1.2494 14 1 1.6546 -1.7398 -1.2945 15 6 1.6774 0.0689 -2.5345 16 6 2.7786 -0.3587 -3.5278 17 7 3.9163 -0.8464 -2.7346 18 6 5.0704 -1.3322 -3.2328 19 8 5.9117 -1.7899 -2.4830 20 6 5.3130 -1.3087 -4.6842 21 6 4.4197 -0.9257 -5.6696 22 6 5.1105 -1.0767 -6.8741 23 7 6.3118 -1.5150 -6.5956 24 7 6.4663 -1.6562 -5.3284 25 6 7.6914 -2.1222 -4.6741 26 6 8.8464 -1.1383 -4.9529 27 6 10.0892 -2.0482 -5.1171 28 6 9.5185 -3.2727 -5.8748 29 6 8.1187 -3.4792 -5.2602 30 6 3.5880 -0.7103 -1.3038 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 3.2476 -2.3966 4.2419 36 1 0.6920 -0.2201 -2.8998 37 1 1.7199 1.1426 -2.3519 38 1 3.0867 0.4943 -4.1324 39 1 2.4059 -1.1562 -4.1707 40 1 3.4041 -0.5838 -5.5357 41 1 4.7220 -0.8694 -7.8602 42 1 7.5291 -2.2138 -3.6001 43 1 8.6588 -0.5797 -5.8699 44 1 8.9800 -0.4584 -4.1114 45 1 10.4822 -2.3445 -4.1446 46 1 10.8566 -1.5505 -5.7098 47 1 10.1424 -4.1503 -5.7062 48 1 9.4396 -3.0611 -6.9411 49 1 8.1646 -4.2292 -4.4706 50 1 7.4141 -3.7916 -6.0310 51 1 3.9934 -1.5505 -0.7399 52 1 3.9763 0.2304 -0.9133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501051039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:13 Heat of formation + Delta-G solvation = 35.443428 kcal Electronic energy + Delta-G solvation = -31059.521826 eV Core-core repulsion = 27059.930651 eV Total energy + Delta-G solvation = -3999.591176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.64602 -41.03577 -39.13108 -38.88959 -36.85601 -34.40652 -33.28418 -32.56080 -31.62322 -30.05781 -29.86662 -29.42852 -28.65197 -25.97231 -25.58606 -23.38122 -23.05297 -22.74983 -21.74493 -21.57750 -21.07739 -19.99213 -19.18890 -18.39690 -17.61013 -17.42908 -16.85772 -16.70929 -16.54223 -16.26953 -15.70663 -15.52887 -15.34413 -15.21316 -14.79747 -14.53619 -14.43775 -14.39203 -14.14990 -13.82582 -13.55021 -13.39006 -13.10180 -12.99046 -12.78487 -12.72731 -12.56032 -12.35432 -12.25258 -12.21579 -12.15786 -12.09728 -12.02733 -11.77115 -11.61535 -11.59140 -11.51575 -11.33838 -11.04967 -10.90878 -10.29654 -9.99345 -9.74707 -8.97406 -7.91396 -5.18750 0.17634 1.23779 1.46343 1.49041 1.54748 1.66301 1.96774 2.07046 2.57318 3.22869 3.30194 3.42653 3.43841 3.60559 3.69305 3.77953 3.87538 3.89769 4.12077 4.18149 4.26416 4.30385 4.33313 4.35148 4.37676 4.47486 4.56129 4.58136 4.63361 4.65809 4.69702 4.70906 4.84399 4.87589 4.88884 4.90213 4.98766 5.03193 5.08714 5.10457 5.11878 5.13500 5.23459 5.33135 5.34310 5.43572 5.55009 5.58102 5.67968 5.77307 6.30715 6.33196 6.85757 7.10610 7.36625 8.15123 8.35492 9.32078 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002576 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.863367 B =10867.528459 C =12540.671643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.280 1.280 13 C -0.092 4.092 14 H 0.077 0.923 15 C -0.112 4.112 16 C 0.087 3.913 17 N -0.599 5.599 18 C 0.591 3.409 19 O -0.587 6.587 20 C -0.061 4.061 21 C -0.181 4.181 22 C -0.006 4.006 23 N -0.289 5.289 24 N -0.258 5.258 25 C 0.120 3.880 26 C -0.126 4.126 27 C -0.116 4.116 28 C -0.112 4.112 29 C -0.125 4.125 30 C 0.128 3.872 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.200 0.800 41 H 0.223 0.777 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.041 0.959 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 3.153 -26.915 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.207 1.207 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.150 4.150 16 C -0.034 4.034 17 N -0.330 5.330 18 C 0.380 3.620 19 O -0.469 6.469 20 C -0.189 4.189 21 C -0.210 4.210 22 C -0.182 4.182 23 N -0.121 5.121 24 N -0.046 5.046 25 C 0.019 3.981 26 C -0.164 4.164 27 C -0.153 4.153 28 C -0.150 4.150 29 C -0.164 4.164 30 C 0.005 3.995 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.217 0.783 41 H 0.239 0.761 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.060 0.940 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.583 2.683 -26.848 27.553 hybrid contribution -0.384 -0.077 2.156 2.192 sum 5.199 2.606 -24.692 25.367 Atomic orbital electron populations 1.22273 0.96863 1.00926 1.01193 1.20436 0.93253 0.94783 0.84481 0.93380 1.42664 1.78482 1.10240 1.06443 1.19560 1.34298 0.94109 0.88272 0.90516 1.25508 1.03428 0.96807 1.01402 1.69819 1.52964 1.10273 1.29254 0.85300 0.77962 0.77273 0.79805 1.20227 1.22703 1.20663 1.22503 0.91875 1.00711 0.96165 0.90465 1.22771 0.99354 1.01117 0.91780 1.22816 0.85022 1.00682 0.94846 1.48229 1.15330 1.60909 1.08568 1.16974 0.81226 0.77678 0.86103 1.90730 1.46018 1.48964 1.61192 1.21323 0.91178 1.13125 0.93277 1.23173 1.02059 1.05215 0.90522 1.24278 0.89674 1.03061 1.01150 1.73098 1.23012 1.19300 0.96699 1.46027 1.10555 1.44912 1.03117 1.22881 0.80894 0.96219 0.98067 1.22696 0.93960 0.97535 1.02198 1.22480 0.96050 0.95353 1.01456 1.22306 0.93803 0.98931 0.99952 1.22440 0.99109 0.94209 1.00614 1.22049 0.96883 1.00484 0.80058 0.94846 0.89829 0.94069 0.79926 0.94357 0.86465 0.89026 0.88111 0.88458 0.78313 0.76080 0.87173 0.90622 0.91464 0.90545 0.89073 0.89512 0.90762 0.90525 0.91480 0.94040 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.34 71.98 0.67 -4.01 16 2 C 0.18 6.32 2.41 45.00 0.11 6.43 16 3 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 4 N -0.74 -36.08 4.82 -322.95 -1.56 -37.64 16 5 C -0.23 -12.60 9.93 84.03 0.83 -11.77 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 8 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 9 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C -0.09 -2.65 2.63 -9.40 -0.02 -2.67 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.11 -1.91 5.59 31.79 0.18 -1.74 16 16 C 0.09 1.48 5.00 86.73 0.43 1.91 16 17 N -0.60 -17.11 3.33 -815.94 -2.71 -19.82 16 18 C 0.59 19.49 7.82 86.59 0.68 20.17 16 19 O -0.59 -24.26 14.63 -4.14 -0.06 -24.32 16 20 C -0.06 -1.65 6.92 40.79 0.28 -1.37 16 21 C -0.18 -3.32 9.44 22.66 0.21 -3.11 16 22 C -0.01 -0.11 12.03 85.18 1.02 0.91 16 23 N -0.29 -6.72 11.04 -57.14 -0.63 -7.35 16 24 N -0.26 -6.80 3.06 -310.88 -0.95 -7.75 16 25 C 0.12 3.05 3.60 45.72 0.16 3.22 16 26 C -0.13 -2.64 6.51 31.67 0.21 -2.44 16 27 C -0.12 -1.79 6.91 31.89 0.22 -1.57 16 28 C -0.11 -1.74 6.83 31.67 0.22 -1.52 16 29 C -0.13 -2.64 6.47 31.32 0.20 -2.44 16 30 C 0.13 4.43 6.11 86.86 0.53 4.96 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 1.81 7.50 -2.39 -0.02 1.79 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.37 19.96 7.80 -92.71 -0.72 19.24 16 35 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.12 1.33 8.13 -2.39 -0.02 1.31 16 37 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 38 H 0.10 1.25 6.93 -2.39 -0.02 1.24 16 39 H 0.10 1.25 6.99 -2.39 -0.02 1.23 16 40 H 0.20 2.19 4.66 -2.92 -0.01 2.17 16 41 H 0.22 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.11 3.48 5.37 -2.39 -0.01 3.46 16 43 H 0.08 1.63 7.76 -2.39 -0.02 1.62 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 1.52 7.62 -2.38 -0.02 1.50 16 51 H 0.04 1.79 7.99 -2.39 -0.02 1.77 16 52 H 0.06 2.18 8.04 -2.38 -0.02 2.16 16 Total: -1.00 -76.28 406.16 3.00 -73.28 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.20 Total: 34.40 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.41 Total: 0.85 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -5.57 Total: -133.04 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.28 3.00 -73.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501051039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.722 kcal (2) G-P(sol) polarization free energy of solvation -76.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds