Wall clock time and date at job start Wed Apr 1 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46563 * 2 1 4 4 N 1.46493 * 109.47399 * 120.00013 * 2 1 3 5 5 C 1.36939 * 120.00184 * 275.00241 * 4 2 1 6 6 H 1.08008 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00239 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99626 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46885 * 90.00357 * 9 7 5 11 11 H 1.48495 * 109.47224 * 209.99993 * 9 7 5 12 12 H 1.48495 * 109.46942 * 330.00714 * 9 7 5 13 13 C 1.52997 * 109.47127 * 240.00594 * 2 1 3 14 14 H 1.09005 * 110.88501 * 300.91224 * 13 2 1 15 15 C 1.55165 * 111.00465 * 176.99294 * 13 2 1 16 16 C 1.54316 * 102.94007 * 206.42147 * 15 13 2 17 17 N 1.47020 * 107.27673 * 22.18967 * 16 15 13 18 18 C 1.34771 * 125.65318 * 181.09596 * 17 16 15 19 19 O 1.21634 * 120.00293 * 184.69146 * 18 17 16 20 20 C 1.47164 * 119.99831 * 4.68646 * 18 17 16 21 21 C 1.38408 * 126.88600 * 354.26159 * 20 18 17 22 22 C 1.39675 * 105.35861 * 179.91220 * 21 20 18 23 23 N 1.30853 * 107.86346 * 0.35432 * 22 21 20 24 24 N 1.28446 * 110.93078 * 359.77024 * 23 22 21 25 25 C 1.46496 * 125.19364 * 180.02562 * 24 23 22 26 26 C 1.54265 * 110.03441 * 62.87740 * 25 24 23 27 27 C 1.54963 * 104.16179 * 217.13502 * 26 25 24 28 28 C 1.54893 * 102.77336 * 37.89179 * 27 26 25 29 29 C 1.53874 * 110.03006 * 305.66077 * 25 24 23 30 30 C 1.47429 * 108.69762 * 1.06166 * 17 16 15 31 31 H 1.08996 * 109.47391 * 294.98090 * 1 2 3 32 32 H 1.09003 * 109.46852 * 174.98326 * 1 2 3 33 33 H 1.09000 * 109.47240 * 54.98067 * 1 2 3 34 34 H 0.96998 * 120.00443 * 94.99852 * 4 2 1 35 35 H 0.97000 * 119.99856 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71379 * 324.78177 * 15 13 2 37 37 H 1.08996 * 110.71831 * 88.05427 * 15 13 2 38 38 H 1.09004 * 109.88093 * 262.77148 * 16 15 13 39 39 H 1.08996 * 110.00955 * 141.68406 * 16 15 13 40 40 H 1.08001 * 127.31513 * 0.03304 * 21 20 18 41 41 H 1.07999 * 126.06120 * 180.09367 * 22 21 20 42 42 H 1.08999 * 110.01814 * 184.27436 * 25 24 23 43 43 H 1.08997 * 110.48375 * 335.78539 * 26 25 24 44 44 H 1.09002 * 110.47906 * 98.42497 * 26 25 24 45 45 H 1.08992 * 110.72264 * 279.57378 * 27 26 25 46 46 H 1.09003 * 110.91803 * 156.29519 * 27 26 25 47 47 H 1.09001 * 110.48097 * 203.39872 * 28 27 26 48 48 H 1.09006 * 110.60130 * 80.81782 * 28 27 26 49 49 H 1.09005 * 110.03537 * 238.56823 * 29 25 24 50 50 H 1.08999 * 110.03439 * 359.95280 * 29 25 24 51 51 H 1.09011 * 110.36105 * 217.02905 * 30 17 16 52 52 H 1.09001 * 110.45870 * 94.75997 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0406 2.4242 7 6 2.6115 -0.6620 3.5093 8 7 2.9245 -1.9390 3.4501 9 14 2.7905 0.2701 5.1182 10 1 1.5228 0.1798 5.8862 11 1 3.8947 -0.3237 5.9140 12 1 3.0963 1.6950 4.8334 13 6 2.0400 -0.7211 -1.2493 14 1 1.6763 -1.7482 -1.2808 15 6 3.5892 -0.6764 -1.3238 16 6 3.8657 -0.7884 -2.8379 17 7 2.6485 -0.3519 -3.5375 18 6 2.4784 -0.3227 -4.8741 19 8 1.4572 0.1383 -5.3473 20 6 3.5283 -0.8486 -5.7611 21 6 4.7822 -1.3001 -5.3875 22 6 5.4023 -1.6948 -6.5752 23 7 4.5652 -1.4764 -7.5569 24 7 3.4629 -0.9836 -7.1189 25 6 2.3110 -0.6219 -7.9486 26 6 1.7470 -1.8771 -8.6459 27 6 1.3183 -1.3722 -10.0469 28 6 2.4346 -0.3588 -10.4020 29 6 2.7477 0.3434 -9.0646 30 6 1.6445 0.0477 -2.5346 31 1 -0.3634 0.4340 0.9315 32 1 -0.3633 -1.0238 -0.0899 33 1 -0.3634 0.5897 -0.8416 34 1 2.2491 -1.6317 1.1526 35 1 3.2479 -2.3962 4.2420 36 1 3.9670 0.2678 -0.9316 37 1 4.0255 -1.5197 -0.7886 38 1 4.0921 -1.8225 -3.0978 39 1 4.7020 -0.1456 -3.1128 40 1 5.1930 -1.3407 -4.3895 41 1 6.3978 -2.1033 -6.6674 42 1 1.5396 -0.1577 -7.3342 43 1 2.5180 -2.6423 -8.7358 44 1 0.8869 -2.2632 -8.0989 45 1 0.3484 -0.8773 -9.9983 46 1 1.2970 -2.1911 -10.7659 47 1 2.0756 0.3621 -11.1366 48 1 3.3175 -0.8765 -10.7770 49 1 2.1875 1.2757 -8.9923 50 1 3.8164 0.5433 -8.9883 51 1 0.6461 -0.2451 -2.8598 52 1 1.6861 1.1231 -2.3614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501051041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:25 Heat of formation + Delta-G solvation = 54.162014 kcal Electronic energy + Delta-G solvation = -30860.504609 eV Core-core repulsion = 26861.725133 eV Total energy + Delta-G solvation = -3998.779477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.77851 -39.95005 -38.27871 -37.78632 -35.33927 -32.78927 -32.36768 -31.30441 -30.39265 -29.19411 -29.14631 -27.91590 -27.45628 -25.05107 -23.70702 -22.50827 -21.99664 -21.56686 -21.11316 -20.63280 -19.69818 -19.07987 -17.60840 -17.08450 -16.60343 -16.31226 -16.11287 -15.84820 -15.32288 -14.92050 -14.61995 -14.23036 -14.14004 -13.82643 -13.71687 -13.62383 -13.40148 -13.21609 -12.71793 -12.53912 -12.47262 -12.19652 -12.13223 -11.96540 -11.69135 -11.55695 -11.50817 -11.32666 -11.26589 -10.98292 -10.91870 -10.83040 -10.74719 -10.62811 -10.38839 -10.24344 -10.04995 -9.87062 -9.66925 -9.35914 -9.15310 -8.94533 -8.71905 -6.99830 -5.79984 -3.08466 1.12073 2.13213 2.47377 2.94656 3.07075 3.41171 3.46951 3.48047 4.04239 4.15193 4.20422 4.49914 4.54048 4.59165 4.72690 4.83144 4.94335 5.00428 5.04880 5.06620 5.09295 5.15603 5.24429 5.26709 5.35367 5.44895 5.47723 5.50399 5.50696 5.60117 5.62454 5.65430 5.75686 5.82590 5.83802 5.86423 5.91648 5.93954 6.01972 6.12496 6.18329 6.34291 6.35877 6.40517 6.54709 6.60488 6.62090 6.83323 7.06461 7.34000 7.67498 7.86126 7.99344 8.38522 9.50124 10.06797 10.41760 11.42541 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025069 B = 0.002080 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.645825 B =13458.114993 C =14115.506677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.117 4.117 16 C 0.089 3.911 17 N -0.597 5.597 18 C 0.603 3.397 19 O -0.548 6.548 20 C -0.034 4.034 21 C -0.198 4.198 22 C -0.009 4.009 23 N -0.275 5.275 24 N -0.249 5.249 25 C 0.129 3.871 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.129 4.129 30 C 0.117 3.883 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.171 0.829 41 H 0.185 0.815 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 1.094 -25.616 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.155 4.155 16 C -0.033 4.033 17 N -0.329 5.329 18 C 0.391 3.609 19 O -0.428 6.428 20 C -0.162 4.162 21 C -0.226 4.226 22 C -0.184 4.184 23 N -0.107 5.107 24 N -0.037 5.037 25 C 0.028 3.972 26 C -0.169 4.169 27 C -0.159 4.159 28 C -0.158 4.158 29 C -0.167 4.167 30 C -0.005 4.005 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.188 0.812 41 H 0.202 0.798 42 H 0.156 0.844 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.977 1.426 -27.029 27.084 hybrid contribution 0.415 0.108 1.951 1.998 sum 1.392 1.534 -25.078 25.163 Atomic orbital electron populations 1.22502 0.99239 1.00648 1.00476 1.20125 0.91800 0.95175 0.85386 0.93217 1.42356 1.78158 1.10667 1.05091 1.19209 1.36433 0.93842 0.87260 0.91227 1.24719 1.02237 0.95967 0.97992 1.69651 1.50947 1.08639 1.28846 0.86224 0.77281 0.78816 0.84067 1.21810 1.21834 1.20799 1.22694 0.95362 1.00220 0.93957 0.89965 1.22621 0.96279 1.04445 0.92122 1.22596 0.87006 0.99937 0.93787 1.48158 1.17052 1.63747 1.03992 1.16496 0.84962 0.78687 0.80713 1.90711 1.29713 1.47916 1.74451 1.21325 0.98061 1.11067 0.85782 1.22846 0.93403 1.05201 1.01194 1.23596 1.00518 1.05441 0.88891 1.73095 0.94008 1.15250 1.28356 1.45939 1.11557 1.42412 1.03792 1.22864 0.84565 0.96937 0.92792 1.22750 1.01314 0.96590 0.96227 1.22474 0.98762 0.98963 0.95698 1.22331 0.98917 0.98128 0.96423 1.22460 1.02668 0.98000 0.93588 1.22382 0.91837 0.99581 0.86699 0.92514 0.93564 0.94399 0.78279 0.93545 0.90014 0.89172 0.90675 0.90857 0.81218 0.79794 0.84364 0.90169 0.90590 0.90917 0.90835 0.91176 0.91045 0.90374 0.90463 0.90286 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.25 37.16 0.34 -2.53 16 2 C 0.19 3.34 2.40 -67.93 -0.16 3.18 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -16.63 4.86 -53.42 -0.26 -16.89 16 5 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 6 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 9 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C -0.10 -1.50 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.58 6.17 -24.90 -0.15 -1.73 16 16 C 0.09 1.00 5.01 -3.07 -0.02 0.99 16 17 N -0.60 -7.89 3.33 -171.89 -0.57 -8.46 16 18 C 0.60 8.66 7.82 -12.64 -0.10 8.56 16 19 O -0.55 -8.95 14.69 5.25 0.08 -8.88 16 20 C -0.03 -0.44 6.92 -82.06 -0.57 -1.01 16 21 C -0.20 -2.15 9.43 -38.98 -0.37 -2.51 16 22 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 23 N -0.27 -3.30 11.04 30.59 0.34 -2.96 16 24 N -0.25 -3.08 3.06 -49.61 -0.15 -3.23 16 25 C 0.13 1.39 3.60 -66.82 -0.24 1.15 16 26 C -0.13 -1.20 6.51 -25.03 -0.16 -1.37 16 27 C -0.12 -0.85 6.91 -24.70 -0.17 -1.02 16 28 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 29 C -0.13 -1.17 6.47 -25.61 -0.17 -1.33 16 30 C 0.12 1.59 5.54 -2.53 -0.01 1.58 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.55 7.62 -51.93 -0.40 0.15 16 34 H 0.38 9.44 7.80 -40.82 -0.32 9.12 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 0.76 6.77 -51.93 -0.35 0.41 16 39 H 0.07 0.72 7.12 -51.93 -0.37 0.35 16 40 H 0.17 1.50 4.66 -52.49 -0.24 1.25 16 41 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.14 1.71 5.37 -51.93 -0.28 1.43 16 43 H 0.08 0.81 7.78 -51.93 -0.40 0.41 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.79 7.61 -51.93 -0.40 0.39 16 51 H 0.08 1.10 8.08 -51.92 -0.42 0.68 16 52 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -30.84 406.43 -10.01 -40.84 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.63 Total: 8.98 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.64 Total: -5.94 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.08 Total: -57.87 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.84 -10.01 -40.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501051041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.006 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds