Wall clock time and date at job start Wed Apr 1 2020 04:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47596 * 2 1 4 4 C 1.53009 * 109.47412 * 239.99517 * 2 1 3 5 5 C 1.50704 * 109.46700 * 65.00090 * 4 2 1 6 6 C 1.39865 * 126.03777 * 90.02888 * 5 4 2 7 7 N 1.30837 * 108.20501 * 179.97438 * 6 5 4 8 8 N 1.40085 * 108.20246 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.03792 * 179.97438 * 8 7 6 10 10 C 1.34947 * 107.92473 * 0.26261 * 8 7 6 11 11 C 1.50702 * 109.47119 * 120.00008 * 2 1 3 12 12 O 1.21277 * 120.00476 * 119.99764 * 11 2 1 13 13 N 1.34780 * 119.99942 * 299.99801 * 11 2 1 14 14 C 1.46496 * 120.00446 * 179.97438 * 13 11 2 15 15 C 1.51232 * 111.06917 * 68.33608 * 14 13 11 16 16 C 1.55045 * 104.92111 * 84.45328 * 15 14 13 17 17 C 1.56277 * 105.92128 * 6.65836 * 16 15 14 18 18 C 1.50519 * 101.75462 * 24.64210 * 17 16 15 19 19 H 1.08996 * 107.74298 * 66.77646 * 18 17 16 20 20 N 1.42700 * 128.16487 * 198.66975 * 18 17 16 21 21 C 1.36941 * 127.10394 * 331.75479 * 20 18 17 22 22 H 1.07996 * 120.00210 * 8.10473 * 21 20 18 23 23 C 1.38811 * 119.99971 * 188.10236 * 21 20 18 24 24 N 1.31625 * 119.99906 * 7.95344 * 23 21 20 25 25 Si 1.86801 * 120.00237 * 187.94928 * 23 21 20 26 26 H 1.48490 * 109.47080 * 94.78356 * 25 23 21 27 27 H 1.48504 * 109.46962 * 214.78596 * 25 23 21 28 28 H 1.48501 * 109.46630 * 334.78431 * 25 23 21 29 29 C 1.49298 * 105.79513 * 151.73007 * 20 18 17 30 30 C 1.52137 * 111.09303 * 288.31156 * 14 13 11 31 31 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47001 * 300.00374 * 1 2 3 33 33 H 1.09007 * 109.46610 * 60.00607 * 1 2 3 34 34 H 1.08994 * 109.46834 * 305.00387 * 4 2 1 35 35 H 1.08993 * 109.47273 * 185.00216 * 4 2 1 36 36 H 1.08005 * 125.89889 * 0.02562 * 6 5 4 37 37 H 1.08995 * 109.46588 * 90.02754 * 9 8 7 38 38 H 1.08998 * 109.47338 * 330.02961 * 9 8 7 39 39 H 1.09003 * 109.46853 * 210.02578 * 9 8 7 40 40 H 1.08001 * 126.12631 * 179.73243 * 10 8 7 41 41 H 0.97005 * 119.99267 * 359.97438 * 13 11 2 42 42 H 1.08998 * 110.40594 * 202.67034 * 15 14 13 43 43 H 1.08997 * 110.41092 * 325.10755 * 15 14 13 44 44 H 1.09005 * 109.84096 * 247.71919 * 16 15 14 45 45 H 1.08993 * 110.48861 * 125.94667 * 16 15 14 46 46 H 1.09003 * 110.97005 * 266.52477 * 17 16 15 47 47 H 1.08994 * 111.00372 * 142.77263 * 17 16 15 48 48 H 0.97001 * 120.00049 * 179.97438 * 24 23 21 49 49 H 1.08998 * 110.04808 * 110.60114 * 29 20 18 50 50 H 1.08998 * 110.05050 * 232.08325 * 29 20 18 51 51 H 1.09005 * 111.14773 * 43.90733 * 30 14 13 52 52 H 1.08997 * 111.15326 * 168.13702 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 6 2.3904 1.0663 -3.0902 7 7 1.7187 1.5021 -4.1249 8 7 0.5194 0.7823 -4.2030 9 6 -0.5254 0.9553 -5.2152 10 6 0.4937 -0.0943 -3.1773 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1945 -0.9407 3.6508 15 6 3.6922 -0.7878 3.7942 16 6 3.8878 0.5732 4.5108 17 6 2.4555 1.0620 4.9007 18 6 1.6963 -0.2359 4.9680 19 1 2.0922 -0.8092 5.8062 20 7 0.2840 -0.4348 4.9207 21 6 -0.6876 0.4400 5.3282 22 1 -0.4220 1.4467 5.6150 23 6 -2.0139 0.0327 5.3727 24 7 -2.3209 -1.2320 5.1757 25 14 -3.3629 1.2794 5.7121 26 1 -3.9208 1.7676 4.4255 27 1 -4.4407 0.6382 6.5075 28 1 -2.7996 2.4233 6.4732 29 6 0.0844 -1.7933 4.3345 30 6 1.4864 -2.2739 3.8402 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6054 -1.7199 -1.2951 35 1 3.1263 -0.7996 -1.2055 36 1 3.3567 1.4236 -2.7663 37 1 -0.3251 0.2966 -6.0602 38 1 -0.5336 1.9907 -5.5557 39 1 -1.4948 0.7072 -4.7829 40 1 -0.2998 -0.7929 -2.9565 41 1 1.1494 0.5390 2.5435 42 1 4.0990 -1.5903 4.4094 43 1 4.1691 -0.7799 2.8141 44 1 4.3556 1.2854 3.8310 45 1 4.4988 0.4493 5.4048 46 1 2.0436 1.7156 4.1317 47 1 2.4632 1.5602 5.8701 48 1 -3.2476 -1.5167 5.2071 49 1 -0.2981 -2.4754 5.0938 50 1 -0.6096 -1.7400 3.4956 51 1 1.4067 -2.8144 2.8970 52 1 1.9841 -2.8795 4.5975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507352482.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:11 Heat of formation + Delta-G solvation = 72.558632 kcal Electronic energy + Delta-G solvation = -31975.383729 eV Core-core repulsion = 27977.401989 eV Total energy + Delta-G solvation = -3997.981740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.35581 -40.46343 -38.36503 -34.98340 -34.41809 -33.23817 -32.85885 -31.69378 -30.31686 -29.58915 -27.83515 -26.94259 -25.81944 -25.66295 -24.08808 -23.24522 -21.18186 -20.65169 -20.42488 -19.78427 -19.38201 -18.59413 -17.06007 -16.55602 -16.43412 -15.77183 -15.56618 -15.15892 -14.66718 -14.61322 -14.42944 -14.10873 -13.95841 -13.91864 -13.37263 -13.21975 -13.03662 -12.86173 -12.55867 -12.36154 -12.34165 -12.22499 -11.92722 -11.76092 -11.40446 -11.34131 -11.06312 -11.01475 -10.98897 -10.89808 -10.77645 -10.53022 -10.47047 -10.26904 -10.02290 -9.99327 -9.69104 -9.54111 -9.44105 -9.02791 -8.66383 -8.41253 -8.38519 -6.85414 -5.78820 -3.12363 1.76307 2.38418 2.69060 3.15986 3.34924 3.41245 3.43091 3.75315 4.34883 4.43490 4.64867 4.72471 4.86309 4.95377 4.97928 5.11320 5.14684 5.15514 5.25386 5.27415 5.45304 5.48903 5.53002 5.61131 5.64850 5.75093 5.78123 5.85549 5.95268 5.97895 5.98392 6.04265 6.17421 6.21949 6.26967 6.30299 6.35279 6.39329 6.42038 6.46234 6.53496 6.57061 6.67964 6.84468 6.87406 6.93013 7.26015 7.47979 7.57387 7.60387 7.73431 8.15287 8.17097 8.79974 9.10131 9.77554 10.47902 11.34679 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003352 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.518415 B = 8352.211203 C =10037.823643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.019 4.019 5 C -0.227 4.227 6 C 0.052 3.948 7 N -0.302 5.302 8 N -0.380 5.380 9 C 0.103 3.897 10 C 0.057 3.943 11 C 0.517 3.483 12 O -0.552 6.552 13 N -0.690 5.690 14 C 0.133 3.867 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.157 3.843 19 H 0.021 0.979 20 N -0.582 5.582 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.002 4.002 24 N -0.914 5.914 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.182 3.818 30 C -0.137 4.137 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.181 0.819 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.172 0.828 41 H 0.402 0.598 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.048 0.952 50 H 0.044 0.956 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 3.048 -14.743 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.109 0.891 4 C -0.058 4.058 5 C -0.238 4.238 6 C -0.134 4.134 7 N -0.124 5.124 8 N -0.163 5.163 9 C -0.039 4.039 10 C -0.089 4.089 11 C 0.303 3.697 12 O -0.430 6.430 13 N -0.340 5.340 14 C 0.045 3.955 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.153 4.153 18 C 0.046 3.954 19 H 0.038 0.962 20 N -0.306 5.306 21 C -0.360 4.360 22 H 0.096 0.904 23 C -0.199 4.199 24 N -0.561 5.561 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.058 3.942 30 C -0.176 4.176 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.198 0.802 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.190 0.810 41 H 0.237 0.763 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.239 3.183 -15.842 17.706 hybrid contribution -1.265 0.433 0.947 1.639 sum 5.973 3.616 -14.896 16.451 Atomic orbital electron populations 1.21781 0.93010 1.02669 1.02518 1.21273 0.97674 1.00589 0.93021 0.89141 1.19651 1.01407 0.96976 0.87723 1.20122 0.96455 1.04536 1.02676 1.23819 1.00128 0.96091 0.93349 1.77326 0.94277 1.18962 1.21796 1.48436 1.15966 1.29036 1.22844 1.21826 0.87914 1.04034 0.90124 1.22387 1.00065 0.96273 0.90174 1.20492 0.80095 0.84565 0.84576 1.90635 1.38864 1.26529 1.86999 1.45748 1.52304 1.31492 1.04486 1.21478 0.92374 0.94653 0.86991 1.21740 0.95348 0.97147 1.00720 1.22700 0.96720 0.96569 0.99449 1.21832 0.94558 0.97799 1.01079 1.20810 0.87004 0.94249 0.93300 0.96217 1.43627 0.98624 1.16036 1.72286 1.18993 0.86203 0.92353 1.38493 0.90423 1.24791 0.97351 0.96049 1.01756 1.69944 1.17268 1.13501 1.55370 0.86188 0.82078 0.80364 0.77655 1.21713 1.21809 1.20617 1.21906 0.90514 0.85240 0.96559 1.22753 0.98646 0.95375 1.00814 0.92190 0.91711 0.92078 0.90854 0.90444 0.80161 0.90924 0.89453 0.89487 0.81042 0.76267 0.91419 0.91140 0.92355 0.91988 0.91763 0.91857 0.93725 0.93340 0.93809 0.91433 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.80 37.16 0.33 -1.49 16 2 C -0.10 -1.33 2.71 -91.77 -0.25 -1.57 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.02 -0.22 4.52 -27.88 -0.13 -0.35 16 5 C -0.23 -2.53 4.83 -105.05 -0.51 -3.04 16 6 C 0.05 0.59 11.96 -17.37 -0.21 0.39 16 7 N -0.30 -3.76 12.58 30.62 0.39 -3.38 16 8 N -0.38 -3.95 4.01 -68.16 -0.27 -4.23 16 9 C 0.10 0.63 11.47 59.85 0.69 1.32 16 10 C 0.06 0.58 10.01 -17.22 -0.17 0.40 16 11 C 0.52 8.27 6.47 -10.98 -0.07 8.20 16 12 O -0.55 -10.24 14.07 5.56 0.08 -10.17 16 13 N -0.69 -11.54 4.27 -46.58 -0.20 -11.74 16 14 C 0.13 2.37 0.42 -130.71 -0.05 2.31 16 15 C -0.11 -1.73 6.01 -26.54 -0.16 -1.89 16 16 C -0.12 -1.62 6.91 -23.89 -0.17 -1.79 16 17 C -0.11 -1.87 6.46 -26.21 -0.17 -2.04 16 18 C 0.16 3.08 2.62 -68.72 -0.18 2.90 16 19 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 20 N -0.58 -13.78 3.12 -162.69 -0.51 -14.28 16 21 C -0.23 -6.04 10.26 -15.06 -0.15 -6.19 16 22 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 23 C 0.00 -0.06 5.45 -17.43 -0.10 -0.15 16 24 N -0.91 -25.87 10.80 55.49 0.60 -25.27 16 25 Si 0.91 21.22 29.56 -169.99 -5.03 16.20 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.18 4.25 5.28 -0.75 0.00 4.25 16 30 C -0.14 -2.69 6.22 -25.44 -0.16 -2.85 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.92 7.56 -51.93 -0.39 0.52 16 33 H 0.06 0.69 6.40 -51.92 -0.33 0.36 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 36 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.40 6.81 7.23 -40.82 -0.29 6.52 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.15 6.84 -51.93 -0.36 0.79 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.04 7.38 -51.93 -0.38 0.66 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 50 H 0.04 1.12 7.76 -51.93 -0.40 0.72 16 51 H 0.07 1.36 7.18 -51.93 -0.37 0.99 16 52 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -31.77 405.75 -9.08 -40.85 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.79 Total: 7.48 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.46 Total: -1.58 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.00 Total: -58.90 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.77 -9.08 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507352482.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.410 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds