Wall clock time and date at job start Wed Apr 1 2020 04:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47596 * 2 1 4 4 C 1.53009 * 109.47412 * 239.99517 * 2 1 3 5 5 C 1.50704 * 109.46700 * 65.00090 * 4 2 1 6 6 C 1.39865 * 126.03777 * 90.02888 * 5 4 2 7 7 N 1.30837 * 108.20501 * 179.97438 * 6 5 4 8 8 N 1.40085 * 108.20246 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.03792 * 179.97438 * 8 7 6 10 10 C 1.34947 * 107.92473 * 0.26261 * 8 7 6 11 11 C 1.50702 * 109.47119 * 120.00008 * 2 1 3 12 12 O 1.21277 * 120.00476 * 119.99764 * 11 2 1 13 13 N 1.34780 * 119.99942 * 299.99801 * 11 2 1 14 14 C 1.46496 * 120.00446 * 179.97438 * 13 11 2 15 15 C 1.51232 * 111.06917 * 68.33608 * 14 13 11 16 16 C 1.55045 * 104.92111 * 84.45328 * 15 14 13 17 17 C 1.56277 * 105.92128 * 6.65836 * 16 15 14 18 18 C 1.50519 * 101.75462 * 24.64210 * 17 16 15 19 19 H 1.08996 * 107.74298 * 66.77646 * 18 17 16 20 20 N 1.42700 * 128.16487 * 198.66975 * 18 17 16 21 21 C 1.36941 * 127.10394 * 331.75479 * 20 18 17 22 22 H 1.07996 * 120.00210 * 8.10473 * 21 20 18 23 23 C 1.38811 * 119.99971 * 188.10236 * 21 20 18 24 24 N 1.31625 * 119.99906 * 7.95344 * 23 21 20 25 25 Si 1.86801 * 120.00237 * 187.94928 * 23 21 20 26 26 H 1.48490 * 109.47080 * 94.78356 * 25 23 21 27 27 H 1.48504 * 109.46962 * 214.78596 * 25 23 21 28 28 H 1.48501 * 109.46630 * 334.78431 * 25 23 21 29 29 C 1.49298 * 105.79513 * 151.73007 * 20 18 17 30 30 C 1.52137 * 111.09303 * 288.31156 * 14 13 11 31 31 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47001 * 300.00374 * 1 2 3 33 33 H 1.09007 * 109.46610 * 60.00607 * 1 2 3 34 34 H 1.08994 * 109.46834 * 305.00387 * 4 2 1 35 35 H 1.08993 * 109.47273 * 185.00216 * 4 2 1 36 36 H 1.08005 * 125.89889 * 0.02562 * 6 5 4 37 37 H 1.08995 * 109.46588 * 90.02754 * 9 8 7 38 38 H 1.08998 * 109.47338 * 330.02961 * 9 8 7 39 39 H 1.09003 * 109.46853 * 210.02578 * 9 8 7 40 40 H 1.08001 * 126.12631 * 179.73243 * 10 8 7 41 41 H 0.97005 * 119.99267 * 359.97438 * 13 11 2 42 42 H 1.08998 * 110.40594 * 202.67034 * 15 14 13 43 43 H 1.08997 * 110.41092 * 325.10755 * 15 14 13 44 44 H 1.09005 * 109.84096 * 247.71919 * 16 15 14 45 45 H 1.08993 * 110.48861 * 125.94667 * 16 15 14 46 46 H 1.09003 * 110.97005 * 266.52477 * 17 16 15 47 47 H 1.08994 * 111.00372 * 142.77263 * 17 16 15 48 48 H 0.97001 * 120.00049 * 179.97438 * 24 23 21 49 49 H 1.08998 * 110.04808 * 110.60114 * 29 20 18 50 50 H 1.08998 * 110.05050 * 232.08325 * 29 20 18 51 51 H 1.09005 * 111.14773 * 43.90733 * 30 14 13 52 52 H 1.08997 * 111.15326 * 168.13702 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 6 2.3904 1.0663 -3.0902 7 7 1.7187 1.5021 -4.1249 8 7 0.5194 0.7823 -4.2030 9 6 -0.5254 0.9553 -5.2152 10 6 0.4937 -0.0943 -3.1773 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1945 -0.9407 3.6508 15 6 3.6922 -0.7878 3.7942 16 6 3.8878 0.5732 4.5108 17 6 2.4555 1.0620 4.9007 18 6 1.6963 -0.2359 4.9680 19 1 2.0922 -0.8092 5.8062 20 7 0.2840 -0.4348 4.9207 21 6 -0.6876 0.4400 5.3282 22 1 -0.4220 1.4467 5.6150 23 6 -2.0139 0.0327 5.3727 24 7 -2.3209 -1.2320 5.1757 25 14 -3.3629 1.2794 5.7121 26 1 -3.9208 1.7676 4.4255 27 1 -4.4407 0.6382 6.5075 28 1 -2.7996 2.4233 6.4732 29 6 0.0844 -1.7933 4.3345 30 6 1.4864 -2.2739 3.8402 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6054 -1.7199 -1.2951 35 1 3.1263 -0.7996 -1.2055 36 1 3.3567 1.4236 -2.7663 37 1 -0.3251 0.2966 -6.0602 38 1 -0.5336 1.9907 -5.5557 39 1 -1.4948 0.7072 -4.7829 40 1 -0.2998 -0.7929 -2.9565 41 1 1.1494 0.5390 2.5435 42 1 4.0990 -1.5903 4.4094 43 1 4.1691 -0.7799 2.8141 44 1 4.3556 1.2854 3.8310 45 1 4.4988 0.4493 5.4048 46 1 2.0436 1.7156 4.1317 47 1 2.4632 1.5602 5.8701 48 1 -3.2476 -1.5167 5.2071 49 1 -0.2981 -2.4754 5.0938 50 1 -0.6096 -1.7400 3.4956 51 1 1.4067 -2.8144 2.8970 52 1 1.9841 -2.8795 4.5975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507352482.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:10 Heat of formation + Delta-G solvation = 54.167496 kcal Electronic energy + Delta-G solvation = -31976.181228 eV Core-core repulsion = 27977.401989 eV Total energy + Delta-G solvation = -3998.779239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.19721 -41.86923 -39.73274 -36.21386 -35.93738 -34.42087 -33.87074 -33.45045 -31.66385 -30.83417 -28.61587 -28.52627 -27.30000 -26.53588 -25.92985 -24.40384 -22.21970 -21.94495 -21.54648 -21.19539 -20.59040 -19.99441 -18.35069 -18.08678 -17.47049 -17.32719 -16.45103 -16.38283 -16.26715 -15.76590 -15.71604 -15.53035 -15.35005 -15.10786 -14.54463 -14.13446 -14.08994 -14.02900 -13.86677 -13.57035 -13.47971 -13.19434 -13.18607 -13.03132 -12.97045 -12.80427 -12.74267 -12.58427 -12.14770 -12.09848 -12.07886 -12.00846 -11.96061 -11.77845 -11.52192 -11.41056 -11.32218 -10.98004 -10.68065 -10.40118 -10.30727 -9.79333 -9.24031 -8.82134 -7.83649 -5.18096 0.98187 1.48840 1.49352 1.58155 1.73241 1.83191 1.87708 2.45591 2.52689 3.13387 3.36697 3.67170 3.76878 3.89151 3.93655 4.01634 4.10610 4.13292 4.16669 4.32282 4.37553 4.41797 4.45106 4.45292 4.57348 4.60187 4.61651 4.67389 4.69508 4.70976 4.85186 4.89690 4.94005 4.98029 5.01427 5.04420 5.11134 5.14890 5.25301 5.27778 5.32711 5.33870 5.42544 5.46638 5.59418 5.63619 5.70884 5.75742 5.88757 6.17243 6.20307 6.77653 6.80723 7.06346 7.47545 7.79304 8.52765 9.29652 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003352 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.518415 B = 8352.211203 C =10037.823643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.107 0.893 4 C -0.006 4.006 5 C -0.241 4.241 6 C 0.046 3.954 7 N -0.334 5.334 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.060 3.940 11 C 0.516 3.484 12 O -0.576 6.576 13 N -0.691 5.691 14 C 0.142 3.858 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.109 4.109 18 C 0.144 3.856 19 H 0.010 0.990 20 N -0.595 5.595 21 C -0.232 4.232 22 H 0.086 0.914 23 C -0.059 4.059 24 N -0.948 5.948 25 Si 0.970 3.030 26 H -0.288 1.288 27 H -0.302 1.302 28 H -0.267 1.267 29 C 0.196 3.804 30 C -0.126 4.126 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.197 0.803 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.194 0.806 41 H 0.401 0.599 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.245 0.755 49 H 0.011 0.989 50 H 0.012 0.988 51 H 0.061 0.939 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 4.771 -15.625 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 H 0.125 0.875 4 C -0.045 4.045 5 C -0.252 4.252 6 C -0.139 4.139 7 N -0.156 5.156 8 N -0.165 5.165 9 C -0.047 4.047 10 C -0.087 4.087 11 C 0.304 3.696 12 O -0.457 6.457 13 N -0.341 5.341 14 C 0.053 3.947 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.148 4.148 18 C 0.035 3.965 19 H 0.027 0.973 20 N -0.318 5.318 21 C -0.360 4.360 22 H 0.104 0.896 23 C -0.253 4.253 24 N -0.597 5.597 25 Si 0.799 3.201 26 H -0.215 1.215 27 H -0.229 1.229 28 H -0.192 1.192 29 C 0.071 3.929 30 C -0.165 4.165 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.214 0.786 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.211 0.789 41 H 0.237 0.763 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.029 0.971 50 H 0.031 0.969 51 H 0.079 0.921 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.324 4.942 -16.740 19.338 hybrid contribution -1.608 -0.158 1.210 2.019 sum 6.716 4.784 -15.530 17.583 Atomic orbital electron populations 1.21701 0.92929 1.01994 1.02526 1.21245 0.97454 1.01072 0.91696 0.87527 1.19472 1.00916 0.96479 0.87671 1.20056 0.97222 1.05090 1.02838 1.24133 1.00760 0.95973 0.93075 1.77277 0.95482 1.20256 1.22601 1.48777 1.15958 1.28431 1.23302 1.22156 0.87898 1.04668 0.89985 1.22762 1.00210 0.96068 0.89684 1.21033 0.79361 0.84208 0.85035 1.90623 1.40037 1.27677 1.87332 1.45779 1.52382 1.31378 1.04569 1.21412 0.93877 0.92760 0.86613 1.21729 0.93034 0.98671 1.01063 1.22636 0.95304 0.95600 1.00490 1.21843 0.95358 0.96019 1.01561 1.21018 0.84837 0.96779 0.93833 0.97259 1.43745 1.00270 1.15699 1.72052 1.19359 0.86780 0.92911 1.36974 0.89591 1.25547 0.99537 0.97553 1.02652 1.70145 1.16932 1.15314 1.57294 0.85183 0.79096 0.78493 0.77310 1.21502 1.22903 1.19182 1.21563 0.92006 0.85025 0.94262 1.22605 0.96717 0.96686 1.00511 0.93218 0.93370 0.90271 0.91770 0.90933 0.78648 0.89637 0.89201 0.87192 0.78892 0.76329 0.90699 0.91342 0.90309 0.90048 0.91575 0.91389 0.94584 0.97092 0.96932 0.92055 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.80 71.98 0.63 -2.67 16 2 C -0.09 -2.27 2.71 -11.54 -0.03 -2.30 16 3 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.01 -0.14 4.52 29.85 0.14 -0.01 16 5 C -0.24 -5.01 4.83 -20.14 -0.10 -5.11 16 6 C 0.05 0.98 11.96 85.23 1.02 2.00 16 7 N -0.33 -7.88 12.58 -57.02 -0.72 -8.60 16 8 N -0.38 -7.24 4.01 -369.56 -1.48 -8.73 16 9 C 0.09 0.95 11.47 127.77 1.47 2.41 16 10 C 0.06 1.09 10.01 83.54 0.84 1.93 16 11 C 0.52 16.13 6.47 87.66 0.57 16.69 16 12 O -0.58 -21.03 14.07 -3.02 -0.04 -21.07 16 13 N -0.69 -22.65 4.27 -419.67 -1.79 -24.44 16 14 C 0.14 4.93 0.42 4.33 0.00 4.93 16 15 C -0.11 -3.08 6.01 30.72 0.18 -2.90 16 16 C -0.10 -2.51 6.91 32.43 0.22 -2.29 16 17 C -0.11 -3.33 6.46 30.93 0.20 -3.13 16 18 C 0.14 5.57 2.62 46.47 0.12 5.69 16 19 H 0.01 0.41 7.98 -2.39 -0.02 0.39 16 20 N -0.59 -28.52 3.12 -668.62 -2.09 -30.61 16 21 C -0.23 -12.08 10.26 84.03 0.86 -11.22 16 22 H 0.09 4.26 7.84 -2.91 -0.02 4.24 16 23 C -0.06 -3.23 5.45 84.86 0.46 -2.77 16 24 N -0.95 -55.62 10.80 21.65 0.23 -55.38 16 25 Si 0.97 44.04 29.56 68.60 2.03 46.07 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 C 0.20 9.57 5.28 86.96 0.46 10.03 16 30 C -0.13 -5.03 6.22 31.43 0.20 -4.83 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.35 7.56 -2.39 -0.02 1.33 16 33 H 0.08 1.66 6.40 -2.38 -0.02 1.64 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.72 7.95 -2.39 -0.02 1.70 16 36 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.40 13.34 7.23 -92.70 -0.67 12.67 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.06 6.84 -2.39 -0.02 2.04 16 44 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 1.99 7.38 -2.39 -0.02 1.98 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.01 0.60 7.51 -2.39 -0.02 0.59 16 50 H 0.01 0.67 7.76 -2.39 -0.02 0.65 16 51 H 0.06 2.51 7.18 -2.38 -0.02 2.50 16 52 H 0.07 2.81 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -69.94 405.75 3.62 -66.32 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.24 Total: 29.97 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 7.24 Total: 6.47 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -5.85 Total: -127.76 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.04 Total: -21.07 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.94 3.62 -66.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507352482.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.490 kcal (2) G-P(sol) polarization free energy of solvation -69.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds