Wall clock time and date at job start Wed Apr 1 2020 04:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47108 * 2 1 4 4 C 1.53000 * 109.47029 * 239.99695 * 2 1 3 5 5 C 1.50704 * 109.47054 * 65.00127 * 4 2 1 6 6 C 1.39866 * 126.03937 * 269.99561 * 5 4 2 7 7 N 1.30841 * 108.19911 * 179.74249 * 6 5 4 8 8 N 1.40085 * 108.20773 * 0.40256 * 7 6 5 9 9 C 1.46499 * 126.03816 * 179.85105 * 8 7 6 10 10 C 1.34944 * 107.92454 * 359.59610 * 8 7 6 11 11 C 1.50695 * 109.47135 * 119.99823 * 2 1 3 12 12 O 1.21280 * 120.00031 * 119.99722 * 11 2 1 13 13 N 1.34780 * 119.99890 * 300.00230 * 11 2 1 14 14 C 1.46504 * 119.99865 * 180.02562 * 13 11 2 15 15 C 1.51238 * 111.07208 * 298.98449 * 14 13 11 16 16 C 1.55699 * 104.60438 * 276.10897 * 15 14 13 17 17 C 1.56280 * 105.93829 * 352.75109 * 16 15 14 18 18 C 1.50521 * 101.75803 * 335.74689 * 17 16 15 19 19 H 1.08999 * 108.54418 * 292.95321 * 18 17 16 20 20 N 1.42693 * 127.76727 * 161.09430 * 18 17 16 21 21 C 1.36935 * 127.10439 * 28.53409 * 20 18 17 22 22 H 1.07999 * 120.00270 * 0.02562 * 21 20 18 23 23 C 1.38818 * 120.00034 * 179.97438 * 21 20 18 24 24 N 1.31618 * 119.99793 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46914 * 90.00170 * 25 23 21 27 27 H 1.48498 * 109.46916 * 209.99933 * 25 23 21 28 28 H 1.48496 * 109.47283 * 330.00365 * 25 23 21 29 29 C 1.49293 * 105.79256 * 208.50817 * 20 18 17 30 30 C 1.52135 * 111.09427 * 78.35851 * 14 13 11 31 31 H 1.08992 * 109.47357 * 300.00330 * 1 2 3 32 32 H 1.09001 * 109.46554 * 60.00314 * 1 2 3 33 33 H 1.09001 * 109.47108 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47447 * 305.00078 * 4 2 1 35 35 H 1.08999 * 109.46857 * 184.99763 * 4 2 1 36 36 H 1.08002 * 125.89933 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.47391 * 269.69466 * 9 8 7 38 38 H 1.09001 * 109.46813 * 149.69523 * 9 8 7 39 39 H 1.09004 * 109.47041 * 29.69650 * 9 8 7 40 40 H 1.08004 * 126.13144 * 180.26116 * 10 8 7 41 41 H 0.96996 * 120.00325 * 359.97438 * 13 11 2 42 42 H 1.08997 * 110.41177 * 34.89155 * 15 14 13 43 43 H 1.08994 * 110.40840 * 157.20870 * 15 14 13 44 44 H 1.08998 * 110.15758 * 111.87491 * 16 15 14 45 45 H 1.09005 * 110.15220 * 233.56608 * 16 15 14 46 46 H 1.08997 * 110.96800 * 93.85814 * 17 16 15 47 47 H 1.08999 * 110.97156 * 217.58826 * 17 16 15 48 48 H 0.97006 * 119.99679 * 180.02562 * 24 23 21 49 49 H 1.09008 * 110.04897 * 127.91980 * 29 20 18 50 50 H 1.08997 * 110.05329 * 249.39635 * 29 20 18 51 51 H 1.09000 * 111.14664 * 191.86728 * 30 14 13 52 52 H 1.09001 * 111.15305 * 316.08722 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 6 0.4573 -0.1029 -3.2037 7 7 0.4678 0.7514 -4.1947 8 7 1.6648 1.4766 -4.1348 9 6 2.0797 2.5332 -5.0609 10 6 2.3657 1.0339 -3.0700 11 6 2.0323 -0.7103 1.2304 12 8 2.7296 -1.6964 1.1192 13 7 1.7067 -0.2498 2.4546 14 6 2.1955 -0.9401 3.6508 15 6 1.6918 -2.3653 3.7002 16 6 0.2726 -2.2584 4.3314 17 6 0.1157 -0.7712 4.7854 18 6 1.5504 -0.3512 4.9611 19 1 1.9728 -0.9033 5.8007 20 7 2.0734 0.9757 5.0048 21 6 1.4258 2.1054 5.4285 22 1 0.4062 2.0440 5.7790 23 6 2.0804 3.3294 5.4085 24 7 3.3232 3.4041 4.9818 25 14 1.1967 4.8706 5.9859 26 1 1.4224 5.0544 7.4421 27 1 1.7240 6.0482 5.2507 28 1 -0.2586 4.7343 5.7238 29 6 3.4727 0.8778 4.4937 30 6 3.6480 -0.5859 3.9322 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -1.7199 -1.2951 35 1 3.1263 -0.7995 -1.2055 36 1 -0.3317 -0.8065 -2.9825 37 1 2.6424 2.0940 -5.8847 38 1 2.7078 3.2518 -4.5343 39 1 1.1977 3.0399 -5.4527 40 1 3.3316 1.3948 -2.7486 41 1 1.1493 0.5390 2.5436 42 1 1.6303 -2.7818 2.6948 43 1 2.3426 -2.9770 4.3249 44 1 -0.4876 -2.5074 3.5910 45 1 0.1924 -2.9249 5.1903 46 1 -0.3729 -0.1772 4.0131 47 1 -0.4287 -0.7063 5.7275 48 1 3.7807 4.2594 4.9682 49 1 3.6304 1.6026 3.6949 50 1 4.1798 1.0546 5.3042 51 1 4.0750 -1.2469 4.6864 52 1 4.2409 -0.6011 3.0177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507352483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:16 Heat of formation + Delta-G solvation = 55.631168 kcal Electronic energy + Delta-G solvation = -31955.434012 eV Core-core repulsion = 27956.718243 eV Total energy + Delta-G solvation = -3998.715769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.18951 -41.84383 -39.70951 -36.19537 -35.91966 -34.39264 -33.79375 -33.39835 -31.69776 -30.96288 -28.49933 -28.33261 -27.25512 -26.68931 -25.93750 -24.36347 -22.18553 -21.95300 -21.60272 -21.19821 -20.53798 -19.95786 -18.36029 -18.13362 -17.50191 -17.28125 -16.44086 -16.31644 -16.26361 -15.84535 -15.70587 -15.43534 -15.26801 -15.17200 -14.41245 -14.29151 -14.12205 -14.03402 -13.74151 -13.59228 -13.42001 -13.28348 -13.02966 -12.95982 -12.92957 -12.84194 -12.78746 -12.61229 -12.15041 -12.09149 -12.06050 -12.03191 -11.89442 -11.75584 -11.50060 -11.41919 -11.31839 -10.94673 -10.70888 -10.40200 -10.28507 -9.77814 -9.24314 -8.84221 -7.81792 -5.17058 0.97977 1.49002 1.49909 1.57961 1.72758 1.84293 1.87420 2.46111 2.52776 3.16149 3.38548 3.66720 3.75397 3.90421 3.93924 4.00217 4.13164 4.15276 4.18888 4.30382 4.36738 4.42503 4.44623 4.46313 4.55566 4.60691 4.63893 4.69036 4.69715 4.74689 4.85405 4.94680 4.97273 4.98087 5.02562 5.03834 5.10718 5.17024 5.26783 5.28185 5.31974 5.34733 5.43899 5.52465 5.59228 5.63955 5.72291 5.76138 5.90278 6.16599 6.20638 6.77509 6.81872 7.07412 7.47549 7.79576 8.51992 9.29766 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.003362 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.648981 B = 8325.877818 C = 9968.719343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.006 4.006 5 C -0.241 4.241 6 C 0.051 3.949 7 N -0.334 5.334 8 N -0.383 5.383 9 C 0.094 3.906 10 C 0.054 3.946 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.691 5.691 14 C 0.141 3.859 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.108 4.108 18 C 0.145 3.855 19 H 0.014 0.986 20 N -0.598 5.598 21 C -0.230 4.230 22 H 0.087 0.913 23 C -0.060 4.060 24 N -0.949 5.949 25 Si 0.971 3.029 26 H -0.293 1.293 27 H -0.299 1.299 28 H -0.266 1.266 29 C 0.192 3.808 30 C -0.129 4.129 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.197 0.803 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.245 0.755 49 H 0.033 0.967 50 H -0.001 1.001 51 H 0.076 0.924 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -7.275 -15.018 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.045 4.045 5 C -0.252 4.252 6 C -0.135 4.135 7 N -0.156 5.156 8 N -0.165 5.165 9 C -0.046 4.046 10 C -0.092 4.092 11 C 0.305 3.695 12 O -0.456 6.456 13 N -0.341 5.341 14 C 0.052 3.948 15 C -0.148 4.148 16 C -0.140 4.140 17 C -0.147 4.147 18 C 0.036 3.964 19 H 0.031 0.969 20 N -0.321 5.321 21 C -0.359 4.359 22 H 0.105 0.895 23 C -0.253 4.253 24 N -0.598 5.598 25 Si 0.800 3.200 26 H -0.220 1.220 27 H -0.226 1.226 28 H -0.191 1.191 29 C 0.067 3.933 30 C -0.168 4.168 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.214 0.786 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.211 0.789 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.017 0.983 51 H 0.094 0.906 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.213 -7.138 -16.179 18.436 hybrid contribution 0.500 1.431 1.362 2.038 sum -4.712 -5.707 -14.817 16.563 Atomic orbital electron populations 1.21706 0.91777 1.02854 1.02650 1.21271 0.98652 1.00184 0.91795 0.89328 1.19471 1.00450 0.96976 0.87575 1.20084 0.97639 1.04703 1.02806 1.24102 0.98634 0.98139 0.92590 1.77272 1.03542 1.10556 1.24263 1.48756 1.14030 1.30523 1.23216 1.22145 1.02159 0.87718 0.92627 1.22792 0.99584 0.97161 0.89708 1.20993 0.79350 0.84190 0.84974 1.90611 1.39688 1.28014 1.87325 1.45788 1.52487 1.31179 1.04604 1.21446 0.93516 0.93199 0.86590 1.21881 0.97127 0.93989 1.01806 1.22738 0.95881 0.94783 1.00618 1.21817 0.94907 0.96664 1.01263 1.21051 0.95526 0.85956 0.93821 0.96886 1.43783 1.10814 1.02779 1.74713 1.19368 0.96499 0.85176 1.34831 0.89548 1.25518 0.97007 1.00398 1.02384 1.70127 1.11920 1.24063 1.53722 0.85191 0.78334 0.79368 0.77109 1.22016 1.22583 1.19072 1.21934 0.84440 0.91798 0.95105 1.22897 0.96378 0.97376 1.00160 0.92669 0.90869 0.91483 0.90738 0.91796 0.78593 0.89564 0.87374 0.89188 0.78948 0.76378 0.91003 0.90665 0.90530 0.90113 0.91725 0.91371 0.94593 0.94902 0.98284 0.90556 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.81 71.98 0.63 -2.17 16 2 C -0.10 -2.43 2.71 -11.54 -0.03 -2.47 16 3 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.01 -0.13 4.52 29.85 0.13 0.01 16 5 C -0.24 -5.17 4.78 -20.14 -0.10 -5.26 16 6 C 0.05 1.09 10.63 85.23 0.91 1.99 16 7 N -0.33 -8.04 12.58 -57.02 -0.72 -8.75 16 8 N -0.38 -7.61 4.01 -369.55 -1.48 -9.10 16 9 C 0.09 1.04 11.47 127.77 1.47 2.51 16 10 C 0.05 1.06 11.40 83.54 0.95 2.01 16 11 C 0.52 16.31 6.55 87.65 0.57 16.89 16 12 O -0.58 -20.89 14.04 -3.03 -0.04 -20.93 16 13 N -0.69 -23.12 4.20 -419.65 -1.76 -24.88 16 14 C 0.14 4.93 0.42 4.33 0.00 4.93 16 15 C -0.11 -3.23 5.98 30.95 0.18 -3.05 16 16 C -0.10 -2.56 6.94 32.67 0.23 -2.34 16 17 C -0.11 -3.33 6.45 30.93 0.20 -3.13 16 18 C 0.15 5.60 2.62 46.47 0.12 5.72 16 19 H 0.01 0.55 7.99 -2.39 -0.02 0.54 16 20 N -0.60 -28.60 3.04 -665.52 -2.02 -30.63 16 21 C -0.23 -11.98 10.28 84.04 0.86 -11.11 16 22 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 24 N -0.95 -55.12 10.55 21.65 0.23 -54.89 16 25 Si 0.97 44.03 29.55 68.60 2.03 46.06 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 29 C 0.19 9.32 5.37 87.52 0.47 9.79 16 30 C -0.13 -5.09 6.41 31.99 0.21 -4.88 16 31 H 0.05 1.22 7.56 -2.39 -0.02 1.20 16 32 H 0.07 1.45 6.41 -2.39 -0.02 1.44 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.61 7.95 -2.39 -0.02 1.59 16 36 H 0.20 3.24 8.06 -2.91 -0.02 3.21 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.40 14.02 7.37 -92.71 -0.68 13.34 16 42 H 0.07 2.24 6.21 -2.39 -0.01 2.23 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.06 2.01 7.52 -2.39 -0.02 1.99 16 47 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.24 14.00 8.31 -92.70 -0.77 13.23 16 49 H 0.03 1.79 7.05 -2.38 -0.02 1.77 16 50 H 0.00 -0.06 7.98 -2.39 -0.02 -0.08 16 51 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 52 H 0.06 2.43 7.78 -2.39 -0.02 2.42 16 Total: -1.00 -68.72 405.78 3.73 -64.99 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.22 Total: 31.46 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 7.28 Total: 6.67 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -5.76 Total: -128.25 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.04 Total: -20.93 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.72 3.73 -64.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507352483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.624 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds