Wall clock time and date at job start Wed Apr 1 2020 04:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09003 * 109.46684 * 235.14928 * 3 2 1 5 5 C 1.53003 * 109.46987 * 115.15357 * 3 2 1 6 6 N 1.46890 * 109.47716 * 355.14928 * 3 2 1 7 7 C 1.46907 * 111.00145 * 303.95527 * 6 3 2 8 8 C 1.38584 * 111.00593 * 180.02562 * 6 3 2 9 9 N 1.31222 * 126.46584 * 12.44735 * 8 6 3 10 10 N 1.28533 * 109.85704 * 180.25969 * 9 8 6 11 11 C 1.30299 * 110.04925 * 359.74463 * 10 9 8 12 12 C 1.50707 * 126.34317 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46927 * 184.86573 * 12 11 10 14 14 C 1.52994 * 109.47202 * 304.86983 * 12 11 10 15 15 C 1.53001 * 109.46694 * 64.86835 * 12 11 10 16 16 C 1.50701 * 109.46565 * 174.99791 * 15 12 11 17 17 H 1.07993 * 120.00704 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99663 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00146 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47042 * 59.99282 * 20 18 16 22 22 H 1.48495 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46737 * 300.00271 * 20 18 16 24 24 N 1.36451 * 126.47824 * 192.28047 * 8 6 3 25 25 C 1.46502 * 127.13392 * 0.02562 * 24 8 6 26 26 C 1.53001 * 109.47032 * 83.73771 * 25 24 8 27 27 H 1.09002 * 110.43743 * 302.95103 * 26 25 24 28 28 C 1.54806 * 110.48819 * 180.25692 * 26 25 24 29 29 C 1.54994 * 102.09614 * 220.44401 * 28 26 25 30 30 O 1.44379 * 103.48625 * 37.02511 * 29 28 26 31 31 C 1.43741 * 106.97984 * 319.93841 * 30 29 28 32 32 H 4.18739 * 15.03943 * 359.97438 * 4 2 1 33 33 H 1.09003 * 109.47059 * 299.99342 * 5 3 2 34 34 H 1.09001 * 109.47029 * 59.99393 * 5 3 2 35 35 H 1.09005 * 109.47225 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.46596 * 298.32157 * 7 6 3 37 37 H 1.08999 * 109.46771 * 58.32066 * 7 6 3 38 38 H 1.09004 * 109.47185 * 178.32359 * 7 6 3 39 39 H 1.09005 * 109.47036 * 180.02562 * 14 12 11 40 40 H 1.08997 * 109.47408 * 299.99746 * 14 12 11 41 41 H 1.08998 * 109.47514 * 59.99949 * 14 12 11 42 42 H 1.09001 * 109.47401 * 294.99595 * 15 12 11 43 43 H 1.09001 * 109.47398 * 54.99922 * 15 12 11 44 44 H 0.97002 * 119.99873 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.46981 * 203.73598 * 25 24 8 46 46 H 1.08999 * 109.47467 * 323.74011 * 25 24 8 47 47 H 1.09001 * 110.90941 * 338.64438 * 28 26 25 48 48 H 1.09005 * 110.90628 * 102.24906 * 28 26 25 49 49 H 1.09002 * 110.61781 * 278.52875 * 29 28 26 50 50 H 1.08996 * 110.61778 * 155.52210 * 29 28 26 51 51 H 1.08996 * 109.88110 * 267.09003 * 31 30 29 52 52 H 1.08996 * 109.88446 * 145.93725 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.5881 0.8434 5 6 3.1557 0.6140 -1.3057 6 7 3.1364 -1.3790 0.1171 7 6 2.5900 -2.0322 1.3142 8 6 4.5217 -1.4152 0.1208 9 7 5.3283 -0.3899 0.2626 10 7 6.5502 -0.7853 0.2118 11 6 6.5952 -2.0763 0.0415 12 6 7.8393 -2.9200 -0.0679 13 1 7.5613 -3.9498 -0.2921 14 6 8.7276 -2.3758 -1.1883 15 6 8.6039 -2.8750 1.2566 16 6 9.7807 -3.8140 1.1893 17 1 9.9651 -4.3853 0.2916 18 6 10.6220 -3.9437 2.2739 19 7 10.3979 -3.2476 3.3670 20 14 12.0812 -5.1070 2.1903 21 1 12.9820 -4.6925 1.0849 22 1 12.8233 -5.0635 3.4758 23 1 11.5984 -6.4895 1.9433 24 7 5.3047 -2.5239 -0.0191 25 6 4.8556 -3.9063 -0.2027 26 6 4.5587 -4.1536 -1.6831 27 1 3.8158 -3.4434 -2.0462 28 6 4.0754 -5.6078 -1.9032 29 6 4.7993 -5.9952 -3.2178 30 8 6.0848 -5.3489 -3.0974 31 6 5.8514 -4.0551 -2.5163 32 1 -1.0500 0.0000 -0.0009 33 1 2.7927 0.0266 -2.1491 34 1 2.7918 1.6378 -1.3926 35 1 4.2457 0.6150 -1.3056 36 1 2.9183 -1.4940 2.2034 37 1 1.5011 -2.0254 1.2667 38 1 2.9454 -3.0616 1.3606 39 1 9.6272 -2.9863 -1.2677 40 1 8.1829 -2.4078 -2.1319 41 1 9.0056 -1.3460 -0.9640 42 1 8.9586 -1.8602 1.4371 43 1 7.9428 -3.1786 2.0684 44 1 10.9896 -3.3391 4.1301 45 1 5.6370 -4.5894 0.1302 46 1 3.9516 -4.0754 0.3823 47 1 4.3904 -6.2510 -1.0816 48 1 2.9933 -5.6430 -2.0302 49 1 4.2567 -5.6121 -4.0821 50 1 4.9182 -7.0765 -3.2862 51 1 5.7289 -3.3117 -3.3039 52 1 6.6872 -3.7816 -1.8725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515871535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:52 Heat of formation + Delta-G solvation = 98.436613 kcal Electronic energy + Delta-G solvation = -32254.300055 eV Core-core repulsion = 28257.440469 eV Total energy + Delta-G solvation = -3996.859586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.81869 -39.58996 -38.49234 -35.67360 -35.11904 -33.37377 -32.34936 -32.03366 -30.70988 -29.50738 -28.97785 -27.13304 -26.42045 -25.40505 -24.15247 -24.01436 -22.87002 -22.04440 -21.25118 -20.17556 -19.27049 -18.05011 -17.19521 -16.81531 -16.66056 -16.42720 -16.13854 -15.64833 -15.20932 -15.12249 -14.85238 -14.51764 -14.21884 -13.84011 -13.48435 -13.42763 -13.07912 -13.01248 -12.58923 -12.48521 -12.41650 -12.10136 -11.91872 -11.83402 -11.66792 -11.59254 -11.24324 -11.21872 -11.05481 -11.02198 -10.92309 -10.89458 -10.73037 -10.50927 -10.47736 -10.26598 -10.01447 -9.91550 -9.77818 -9.57225 -9.27147 -9.13400 -8.37112 -8.04573 -6.01190 -4.04793 1.99832 2.12655 2.59087 2.70986 3.21681 3.33094 3.38135 3.40255 3.67864 3.79742 4.07206 4.21462 4.38353 4.44149 4.50954 4.65574 4.81171 4.93119 4.94815 4.96604 5.04716 5.10363 5.14742 5.20644 5.34222 5.35733 5.39569 5.44498 5.47832 5.52123 5.54706 5.62613 5.63987 5.76199 5.80448 5.86305 5.90222 5.98811 6.03540 6.12737 6.22454 6.26720 6.54050 6.68715 6.73452 6.78390 6.89005 7.05455 7.30140 7.36375 7.58917 7.75723 7.97026 8.33601 9.00553 9.14861 9.59083 11.09775 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.003612 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.643437 B = 7749.194207 C = 9378.179424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.208 3.792 4 H 0.085 0.915 5 C -0.145 4.145 6 N -0.450 5.450 7 C 0.020 3.980 8 C 0.333 3.667 9 N -0.318 5.318 10 N -0.282 5.282 11 C 0.217 3.783 12 C -0.005 4.005 13 H 0.075 0.925 14 C -0.128 4.128 15 C 0.040 3.960 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.476 5.476 25 C 0.116 3.884 26 C -0.135 4.135 27 H 0.094 0.906 28 C -0.146 4.146 29 C 0.046 3.954 30 O -0.371 6.371 31 C 0.038 3.962 32 H 0.219 0.781 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.262 0.738 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.094 0.906 51 H 0.057 0.943 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.712 -1.352 -10.092 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.102 3.898 4 H 0.103 0.897 5 C -0.202 4.202 6 N -0.175 5.175 7 C -0.127 4.127 8 C -0.023 4.023 9 N -0.162 5.162 10 N -0.119 5.119 11 C -0.050 4.050 12 C -0.026 4.026 13 H 0.093 0.907 14 C -0.186 4.186 15 C 0.002 3.998 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.203 1.203 24 N -0.170 5.170 25 C -0.007 4.007 26 C -0.154 4.154 27 H 0.113 0.887 28 C -0.184 4.184 29 C -0.031 4.031 30 O -0.290 6.290 31 C -0.038 4.038 32 H 0.236 0.764 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.112 0.888 51 H 0.075 0.925 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.137 -0.219 -10.171 22.561 hybrid contribution -0.094 -1.505 0.700 1.663 sum -20.231 -1.725 -9.472 22.404 Atomic orbital electron populations 1.24870 0.95710 0.99122 1.01322 1.22640 0.93656 1.01041 1.00079 1.18400 0.83939 0.86494 1.00993 0.89738 1.21898 1.03726 1.00033 0.94555 1.58718 1.00370 1.19133 1.39243 1.22603 1.01202 0.99388 0.89498 1.22190 0.89831 0.84812 1.05507 1.74549 0.96727 1.23519 1.21423 1.74026 1.11103 1.08163 1.18653 1.25610 0.85358 0.92837 1.01175 1.20089 0.86815 0.94305 1.01433 0.90705 1.21722 0.99516 1.02498 0.94848 1.19105 0.93977 0.98612 0.88148 1.21105 1.10485 1.24452 0.99863 0.92270 1.24991 0.97825 0.95911 0.95443 1.69969 1.38257 1.40813 1.03973 0.86669 0.82771 0.81351 0.77295 1.20086 1.21358 1.20255 1.46252 1.06674 1.08012 1.56102 1.21996 1.02213 0.79889 0.96586 1.22916 0.98930 0.98504 0.95072 0.88736 1.23146 1.01227 0.94810 0.99258 1.23537 0.84598 0.98675 0.96273 1.88936 1.27669 1.29219 1.83131 1.23546 0.97947 0.85866 0.96468 0.76395 0.92222 0.91492 0.89427 0.93758 0.89576 0.90776 0.90522 0.94757 0.91823 0.94992 0.96936 0.92878 0.87640 0.88693 0.89801 0.89791 0.92316 0.88775 0.92463 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.17 -1.84 11.12 -37.12 -0.41 -2.25 16 3 C 0.21 2.52 2.19 -70.51 -0.15 2.36 16 4 H 0.08 1.11 7.98 -51.93 -0.41 0.69 16 5 C -0.14 -1.73 8.96 37.16 0.33 -1.40 16 6 N -0.45 -5.67 4.65 -177.98 -0.83 -6.50 16 7 C 0.02 0.22 9.13 60.07 0.55 0.77 16 8 C 0.33 5.22 6.32 -318.87 -2.02 3.21 16 9 N -0.32 -5.94 9.55 30.32 0.29 -5.65 16 10 N -0.28 -5.89 12.16 32.99 0.40 -5.49 16 11 C 0.22 4.13 5.99 -154.02 -0.92 3.21 16 12 C -0.01 -0.11 1.71 -91.77 -0.16 -0.27 16 13 H 0.07 1.41 5.59 -51.93 -0.29 1.12 16 14 C -0.13 -2.40 8.70 37.15 0.32 -2.08 16 15 C 0.04 1.00 4.43 -27.88 -0.12 0.88 16 16 C -0.52 -14.00 8.41 -34.44 -0.29 -14.29 16 17 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.48 -7.43 2.63 -114.08 -0.30 -7.73 16 25 C 0.12 1.40 5.06 -4.04 -0.02 1.38 16 26 C -0.13 -1.44 3.31 -89.09 -0.29 -1.74 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 C -0.15 -1.22 6.71 -24.73 -0.17 -1.38 16 29 C 0.05 0.43 7.72 38.21 0.29 0.73 16 30 O -0.37 -5.03 11.52 -35.23 -0.41 -5.43 16 31 C 0.04 0.50 7.17 37.74 0.27 0.77 16 32 H 0.22 1.04 7.80 -54.09 -0.42 0.62 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.26 5.91 -51.93 -0.31 0.96 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.78 6.93 -51.93 -0.36 0.42 16 38 H 0.07 0.73 5.63 -51.93 -0.29 0.44 16 39 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 40 H 0.03 0.56 7.22 -51.93 -0.37 0.18 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.11 1.35 7.05 -51.93 -0.37 0.98 16 46 H 0.09 0.95 5.69 -51.93 -0.30 0.65 16 47 H 0.08 0.67 7.87 -51.93 -0.41 0.27 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.10 1.53 2.74 -51.93 -0.14 1.38 16 LS Contribution 408.56 15.07 6.16 6.16 Total: -1.00 -32.55 408.56 -9.47 -42.02 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.19 Total: 1.76 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.31 Total: -9.58 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.30 Total: -51.12 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.41 Total: -5.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.55 -9.47 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515871535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.459 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds