Wall clock time and date at job start Wed Apr 1 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09003 * 109.46684 * 235.14928 * 3 2 1 5 5 C 1.53003 * 109.46987 * 115.15357 * 3 2 1 6 6 N 1.46890 * 109.47716 * 355.14928 * 3 2 1 7 7 C 1.46907 * 111.00145 * 303.95527 * 6 3 2 8 8 C 1.38584 * 111.00593 * 180.02562 * 6 3 2 9 9 N 1.31222 * 126.46584 * 12.44735 * 8 6 3 10 10 N 1.28533 * 109.85704 * 180.25969 * 9 8 6 11 11 C 1.30299 * 110.04925 * 359.74463 * 10 9 8 12 12 C 1.50707 * 126.34317 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46927 * 184.86573 * 12 11 10 14 14 C 1.52994 * 109.47202 * 304.86983 * 12 11 10 15 15 C 1.53001 * 109.46694 * 64.86835 * 12 11 10 16 16 C 1.50701 * 109.46565 * 174.99791 * 15 12 11 17 17 H 1.07993 * 120.00704 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99663 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00146 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47042 * 59.99282 * 20 18 16 22 22 H 1.48495 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46737 * 300.00271 * 20 18 16 24 24 N 1.36451 * 126.47824 * 192.28047 * 8 6 3 25 25 C 1.46502 * 127.13392 * 0.02562 * 24 8 6 26 26 C 1.53001 * 109.47032 * 83.73771 * 25 24 8 27 27 H 1.09002 * 110.43743 * 302.95103 * 26 25 24 28 28 C 1.54806 * 110.48819 * 180.25692 * 26 25 24 29 29 C 1.54994 * 102.09614 * 220.44401 * 28 26 25 30 30 O 1.44379 * 103.48625 * 37.02511 * 29 28 26 31 31 C 1.43741 * 106.97984 * 319.93841 * 30 29 28 32 32 H 4.18739 * 15.03943 * 359.97438 * 4 2 1 33 33 H 1.09003 * 109.47059 * 299.99342 * 5 3 2 34 34 H 1.09001 * 109.47029 * 59.99393 * 5 3 2 35 35 H 1.09005 * 109.47225 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.46596 * 298.32157 * 7 6 3 37 37 H 1.08999 * 109.46771 * 58.32066 * 7 6 3 38 38 H 1.09004 * 109.47185 * 178.32359 * 7 6 3 39 39 H 1.09005 * 109.47036 * 180.02562 * 14 12 11 40 40 H 1.08997 * 109.47408 * 299.99746 * 14 12 11 41 41 H 1.08998 * 109.47514 * 59.99949 * 14 12 11 42 42 H 1.09001 * 109.47401 * 294.99595 * 15 12 11 43 43 H 1.09001 * 109.47398 * 54.99922 * 15 12 11 44 44 H 0.97002 * 119.99873 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.46981 * 203.73598 * 25 24 8 46 46 H 1.08999 * 109.47467 * 323.74011 * 25 24 8 47 47 H 1.09001 * 110.90941 * 338.64438 * 28 26 25 48 48 H 1.09005 * 110.90628 * 102.24906 * 28 26 25 49 49 H 1.09002 * 110.61781 * 278.52875 * 29 28 26 50 50 H 1.08996 * 110.61778 * 155.52210 * 29 28 26 51 51 H 1.08996 * 109.88110 * 267.09003 * 31 30 29 52 52 H 1.08996 * 109.88446 * 145.93725 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.5881 0.8434 5 6 3.1557 0.6140 -1.3057 6 7 3.1364 -1.3790 0.1171 7 6 2.5900 -2.0322 1.3142 8 6 4.5217 -1.4152 0.1208 9 7 5.3283 -0.3899 0.2626 10 7 6.5502 -0.7853 0.2118 11 6 6.5952 -2.0763 0.0415 12 6 7.8393 -2.9200 -0.0679 13 1 7.5613 -3.9498 -0.2921 14 6 8.7276 -2.3758 -1.1883 15 6 8.6039 -2.8750 1.2566 16 6 9.7807 -3.8140 1.1893 17 1 9.9651 -4.3853 0.2916 18 6 10.6220 -3.9437 2.2739 19 7 10.3979 -3.2476 3.3670 20 14 12.0812 -5.1070 2.1903 21 1 12.9820 -4.6925 1.0849 22 1 12.8233 -5.0635 3.4758 23 1 11.5984 -6.4895 1.9433 24 7 5.3047 -2.5239 -0.0191 25 6 4.8556 -3.9063 -0.2027 26 6 4.5587 -4.1536 -1.6831 27 1 3.8158 -3.4434 -2.0462 28 6 4.0754 -5.6078 -1.9032 29 6 4.7993 -5.9952 -3.2178 30 8 6.0848 -5.3489 -3.0974 31 6 5.8514 -4.0551 -2.5163 32 1 -1.0500 0.0000 -0.0009 33 1 2.7927 0.0266 -2.1491 34 1 2.7918 1.6378 -1.3926 35 1 4.2457 0.6150 -1.3056 36 1 2.9183 -1.4940 2.2034 37 1 1.5011 -2.0254 1.2667 38 1 2.9454 -3.0616 1.3606 39 1 9.6272 -2.9863 -1.2677 40 1 8.1829 -2.4078 -2.1319 41 1 9.0056 -1.3460 -0.9640 42 1 8.9586 -1.8602 1.4371 43 1 7.9428 -3.1786 2.0684 44 1 10.9896 -3.3391 4.1301 45 1 5.6370 -4.5894 0.1302 46 1 3.9516 -4.0754 0.3823 47 1 4.3904 -6.2510 -1.0816 48 1 2.9933 -5.6430 -2.0302 49 1 4.2567 -5.6121 -4.0821 50 1 4.9182 -7.0765 -3.2862 51 1 5.7289 -3.3117 -3.3039 52 1 6.6872 -3.7816 -1.8725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515871535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:50 Heat of formation + Delta-G solvation = 80.295390 kcal Electronic energy + Delta-G solvation = -32255.086718 eV Core-core repulsion = 28257.440469 eV Total energy + Delta-G solvation = -3997.646249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.16414 -40.48884 -39.53214 -37.16368 -36.51375 -34.48297 -34.03037 -33.14255 -31.60343 -30.41877 -30.36130 -28.96122 -27.57368 -26.44030 -25.86901 -25.08184 -23.74811 -23.69197 -22.22404 -21.27192 -20.74207 -18.89137 -18.68564 -18.08698 -17.80748 -17.69689 -17.18714 -16.77611 -16.51367 -16.22939 -16.11246 -15.86035 -15.40309 -15.07425 -14.98151 -14.47549 -14.25256 -14.11464 -13.95554 -13.64199 -13.53276 -13.38242 -13.07624 -13.00727 -12.84672 -12.76606 -12.66690 -12.56074 -12.42538 -12.38042 -12.27806 -12.15765 -11.94125 -11.83269 -11.67156 -11.48089 -11.44629 -11.21513 -11.19480 -11.05751 -10.65795 -10.57889 -10.52614 -9.38066 -8.16637 -6.27984 0.71477 1.02101 1.43559 1.46601 1.53916 1.75294 1.84240 1.87519 2.43673 2.68921 2.96665 3.17376 3.29013 3.31301 3.36632 3.54618 3.65415 3.72072 3.85906 3.94735 4.05147 4.09939 4.18816 4.20900 4.29942 4.34724 4.38952 4.43867 4.47663 4.49815 4.60610 4.67520 4.72380 4.77686 4.79635 4.85775 4.86830 4.89037 4.99998 5.05945 5.08151 5.13387 5.16504 5.18311 5.34891 5.43646 5.48266 5.54236 5.68114 5.82514 5.89093 6.11543 6.20585 6.63803 6.86963 7.41122 7.74597 8.95385 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.003612 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.643437 B = 7749.194207 C = 9378.179424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.222 4.222 3 C 0.210 3.790 4 H 0.066 0.934 5 C -0.139 4.139 6 N -0.441 5.441 7 C 0.020 3.980 8 C 0.352 3.648 9 N -0.348 5.348 10 N -0.321 5.321 11 C 0.205 3.795 12 C 0.010 3.990 13 H 0.089 0.911 14 C -0.119 4.119 15 C 0.052 3.948 16 C -0.529 4.529 17 H 0.073 0.927 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.289 1.289 23 H -0.263 1.263 24 N -0.470 5.470 25 C 0.109 3.891 26 C -0.124 4.124 27 H 0.097 0.903 28 C -0.135 4.135 29 C 0.038 3.962 30 O -0.398 6.398 31 C 0.037 3.963 32 H 0.257 0.743 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.045 0.955 42 H -0.009 1.009 43 H -0.019 1.019 44 H 0.262 0.738 45 H 0.098 0.902 46 H 0.122 0.878 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.071 0.929 50 H 0.110 0.890 51 H 0.052 0.948 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.656 -3.518 -11.447 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.223 4.223 3 C 0.103 3.897 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.166 5.166 7 C -0.127 4.127 8 C -0.005 4.005 9 N -0.192 5.192 10 N -0.159 5.159 11 C -0.064 4.064 12 C -0.010 4.010 13 H 0.107 0.893 14 C -0.177 4.177 15 C 0.014 3.986 16 C -0.567 4.567 17 H 0.091 0.909 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.187 1.187 24 N -0.163 5.163 25 C -0.013 4.013 26 C -0.144 4.144 27 H 0.116 0.884 28 C -0.173 4.173 29 C -0.038 4.038 30 O -0.318 6.318 31 C -0.040 4.040 32 H 0.273 0.727 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.009 0.991 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.140 0.860 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.089 0.911 50 H 0.128 0.872 51 H 0.070 0.930 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.106 -2.406 -11.547 25.942 hybrid contribution 0.638 -0.797 1.101 1.501 sum -22.468 -3.203 -10.446 24.984 Atomic orbital electron populations 1.25724 0.96291 0.96202 0.98418 1.22402 0.93427 1.03722 1.02733 1.18254 0.85602 0.85706 1.00107 0.91638 1.21816 1.01757 1.01100 0.94949 1.58920 0.97988 1.19789 1.39853 1.22710 1.02595 0.99402 0.87969 1.22503 0.90995 0.84116 1.02845 1.74477 0.96393 1.24939 1.23374 1.73930 1.12709 1.09491 1.19727 1.25179 0.86367 0.92425 1.02448 1.19746 0.87080 0.95517 0.98702 0.89278 1.21618 0.99396 1.01136 0.95586 1.18839 0.93782 0.95794 0.90152 1.21517 1.10692 1.24289 1.00212 0.90915 1.25953 1.01005 0.97650 0.95008 1.70133 1.39697 1.42812 1.04898 0.85534 0.78941 0.79483 0.77332 1.19086 1.21434 1.18724 1.46327 1.05419 1.09309 1.55264 1.22345 1.02974 0.77671 0.98268 1.22836 0.97806 1.00457 0.93259 0.88448 1.23157 1.02781 0.92605 0.98780 1.23820 0.83247 0.99429 0.97325 1.88905 1.30237 1.29347 1.83262 1.23454 0.98255 0.85973 0.96324 0.72702 0.91708 0.90174 0.92319 0.95086 0.87107 0.89698 0.90951 0.92309 0.93549 0.99063 1.00031 0.92939 0.88357 0.85996 0.89280 0.86923 0.91116 0.87194 0.92951 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 19.25 74.32 1.43 -0.50 16 2 C -0.22 -4.19 11.12 31.12 0.35 -3.85 16 3 C 0.21 4.98 2.19 43.11 0.09 5.08 16 4 H 0.07 1.78 7.98 -2.39 -0.02 1.76 16 5 C -0.14 -3.33 8.96 71.98 0.65 -2.68 16 6 N -0.44 -10.69 4.65 -717.01 -3.33 -14.02 16 7 C 0.02 0.39 9.13 127.69 1.17 1.55 16 8 C 0.35 11.21 6.32 260.11 1.65 12.85 16 9 N -0.35 -13.66 9.55 -58.00 -0.55 -14.21 16 10 N -0.32 -14.23 12.16 -49.53 -0.60 -14.83 16 11 C 0.20 8.12 5.99 137.64 0.82 8.95 16 12 C 0.01 0.43 1.71 -11.54 -0.02 0.41 16 13 H 0.09 3.42 5.59 -2.39 -0.01 3.41 16 14 C -0.12 -4.64 8.70 71.98 0.63 -4.02 16 15 C 0.05 2.80 4.43 29.85 0.13 2.93 16 16 C -0.53 -29.15 8.41 25.60 0.22 -28.93 16 17 H 0.07 3.73 7.05 -2.91 -0.02 3.71 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 20 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 N -0.47 -14.77 2.63 -514.84 -1.35 -16.13 16 25 C 0.11 2.49 5.06 86.38 0.44 2.92 16 26 C -0.12 -2.41 3.31 -9.80 -0.03 -2.44 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 C -0.14 -1.80 6.71 31.89 0.21 -1.58 16 29 C 0.04 0.61 7.72 72.66 0.56 1.17 16 30 O -0.40 -10.27 11.52 -148.98 -1.72 -11.99 16 31 C 0.04 0.93 7.17 72.36 0.52 1.45 16 32 H 0.26 1.02 7.80 -4.42 -0.03 0.98 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.77 5.91 -2.38 -0.01 1.75 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 1.66 6.93 -2.39 -0.02 1.64 16 38 H 0.08 1.46 5.63 -2.39 -0.01 1.45 16 39 H 0.07 2.83 6.95 -2.38 -0.02 2.81 16 40 H 0.06 1.97 7.22 -2.39 -0.02 1.95 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 44 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.10 2.43 7.05 -2.39 -0.02 2.41 16 46 H 0.12 2.11 5.69 -2.39 -0.01 2.10 16 47 H 0.09 1.13 7.87 -2.39 -0.02 1.11 16 48 H 0.11 0.90 8.14 -2.38 -0.02 0.89 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.08 2.35 2.74 -2.39 -0.01 2.35 16 Total: -1.00 -75.30 408.56 4.93 -70.37 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.92 Total: 18.43 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 9.27 Total: -6.13 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.56 Total: -116.49 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.72 Total: -11.99 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.30 4.93 -70.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515871535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.662 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds