Wall clock time and date at job start Wed Apr 1 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47049 * 275.74578 * 3 2 1 5 5 C 1.52997 * 109.47115 * 155.74857 * 3 2 1 6 6 N 1.46894 * 109.47291 * 35.75080 * 3 2 1 7 7 C 1.46900 * 111.00482 * 66.04395 * 6 3 2 8 8 C 1.38575 * 111.00256 * 190.00139 * 6 3 2 9 9 N 1.31217 * 126.47330 * 345.28786 * 8 6 3 10 10 N 1.28531 * 109.86383 * 180.02562 * 9 8 6 11 11 C 1.30288 * 110.05161 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.34670 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47011 * 0.84187 * 12 11 10 14 14 C 1.53001 * 109.46770 * 120.84012 * 12 11 10 15 15 C 1.50704 * 109.47289 * 240.83967 * 12 11 10 16 16 H 1.08003 * 119.99945 * 0.02562 * 15 12 11 17 17 C 1.37870 * 119.99758 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00126 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99765 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47241 * 59.99996 * 19 17 15 21 21 H 1.48503 * 109.46921 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47289 * 299.99364 * 19 17 15 23 23 N 1.36454 * 126.47912 * 165.57492 * 8 6 3 24 24 C 1.46500 * 127.13479 * 0.02562 * 23 8 6 25 25 C 1.52999 * 109.47361 * 275.27254 * 24 23 8 26 26 H 1.09002 * 110.79954 * 309.39757 * 25 24 23 27 27 C 1.54807 * 110.91076 * 185.76691 * 25 24 23 28 28 C 1.54104 * 104.18642 * 220.91886 * 27 25 24 29 29 O 1.43742 * 107.29686 * 357.97046 * 28 27 25 30 30 C 1.44426 * 106.99833 * 26.48684 * 29 28 27 31 31 H 4.18738 * 15.03931 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47216 * 59.99940 * 5 3 2 33 33 H 1.09001 * 109.47299 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47418 * 300.00379 * 5 3 2 35 35 H 1.08992 * 109.47478 * 189.28472 * 7 6 3 36 36 H 1.09002 * 109.46816 * 309.29143 * 7 6 3 37 37 H 1.09005 * 109.46677 * 69.28193 * 7 6 3 38 38 H 1.08998 * 109.46884 * 173.83733 * 13 12 11 39 39 H 1.09003 * 109.47164 * 293.83808 * 13 12 11 40 40 H 1.09001 * 109.47385 * 53.83466 * 13 12 11 41 41 H 1.08998 * 109.47228 * 306.99159 * 14 12 11 42 42 H 1.08998 * 109.47285 * 66.99499 * 14 12 11 43 43 H 1.09001 * 109.46946 * 186.99461 * 14 12 11 44 44 H 0.96998 * 119.99487 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.47046 * 35.27139 * 24 23 8 46 46 H 1.08996 * 109.47555 * 155.27178 * 24 23 8 47 47 H 1.09000 * 110.48569 * 339.59496 * 27 25 24 48 48 H 1.08999 * 110.48662 * 102.10980 * 27 25 24 49 49 H 1.09000 * 109.87662 * 117.39695 * 28 27 25 50 50 H 1.09002 * 109.87991 * 238.54370 * 28 27 25 51 51 H 1.08997 * 110.65134 * 201.48368 * 30 29 28 52 52 H 1.09003 * 110.60013 * 78.47034 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1021 1.0225 5 6 3.1554 1.3161 -0.5925 6 7 3.1362 -1.1231 -0.8092 7 6 2.7867 -0.9445 -2.2247 8 6 4.5030 -1.2891 -0.6523 9 7 5.3378 -0.4264 -0.1225 10 7 6.5299 -0.9066 -0.1372 11 6 6.5264 -2.0945 -0.6723 12 6 7.7238 -2.9876 -0.8725 13 6 8.9738 -2.2945 -0.3267 14 6 7.5061 -4.3067 -0.1286 15 6 7.9042 -3.2639 -2.3429 16 1 7.2204 -2.8354 -3.0608 17 6 8.9420 -4.0638 -2.7717 18 7 9.7749 -4.5852 -1.8976 19 14 9.1661 -4.4057 -4.5945 20 1 9.3782 -3.1252 -5.3159 21 1 10.3459 -5.2858 -4.7916 22 1 7.9526 -5.0777 -5.1249 23 7 5.2360 -2.3782 -1.0244 24 6 4.7423 -3.5993 -1.6660 25 6 4.2270 -4.5647 -0.5967 26 1 4.9680 -4.7014 0.1909 27 6 3.8303 -5.9233 -1.2240 28 6 2.5267 -6.3083 -0.4980 29 8 2.2601 -5.2833 0.4739 30 6 2.8800 -4.0717 -0.0093 31 1 -1.0500 0.0005 0.0001 32 1 2.7917 2.1500 0.0079 33 1 4.2454 1.3168 -0.5921 34 1 2.7920 1.4189 -1.6150 35 1 3.0126 -1.8591 -2.7729 36 1 1.7231 -0.7224 -2.3111 37 1 3.3651 -0.1194 -2.6405 38 1 9.8188 -2.9816 -0.3711 39 1 9.1914 -1.4116 -0.9277 40 1 8.8017 -1.9965 0.7076 41 1 7.2527 -4.1000 0.9112 42 1 6.6918 -4.8586 -0.5981 43 1 8.4187 -4.9014 -0.1688 44 1 10.5053 -5.1476 -2.1994 45 1 3.9315 -3.3480 -2.3498 46 1 5.5528 -4.0712 -2.2213 47 1 3.6528 -5.8123 -2.2937 48 1 4.6050 -6.6682 -1.0421 49 1 1.7063 -6.3630 -1.2135 50 1 2.6504 -7.2693 0.0012 51 1 3.0512 -3.3741 0.8105 52 1 2.2685 -3.6112 -0.7853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515982777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:39 Heat of formation + Delta-G solvation = 105.382840 kcal Electronic energy + Delta-G solvation = -33293.286350 eV Core-core repulsion = 29296.727975 eV Total energy + Delta-G solvation = -3996.558375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.43494 -39.30554 -38.47763 -35.85777 -34.88593 -33.12067 -31.93017 -31.44377 -29.92221 -29.26112 -28.62655 -26.53362 -25.79255 -25.66436 -25.34063 -23.41255 -22.65223 -21.94134 -20.77986 -20.16870 -19.01262 -17.81863 -17.20053 -16.48804 -16.33221 -16.11870 -15.64295 -15.17108 -15.10702 -14.95574 -14.63316 -14.31791 -13.96731 -13.63951 -13.47914 -12.96417 -12.89392 -12.69311 -12.58891 -12.15871 -11.99838 -11.80597 -11.68754 -11.56586 -11.43368 -11.41258 -11.15595 -10.99537 -10.87044 -10.71996 -10.65535 -10.58506 -10.47814 -10.40754 -10.31582 -10.09091 -9.85252 -9.65980 -9.57658 -9.44656 -9.35270 -8.84701 -8.55472 -7.76606 -6.19613 -4.31451 2.34691 2.45525 2.77605 3.04958 3.15728 3.23253 3.25245 3.59144 3.94388 4.06457 4.24063 4.28419 4.61222 4.76020 4.88753 4.89851 5.05535 5.07256 5.10845 5.17093 5.21965 5.32919 5.40671 5.49144 5.59458 5.61468 5.68593 5.72716 5.78086 5.81387 5.86056 5.88260 5.96921 5.97819 6.07012 6.16404 6.25685 6.38903 6.51809 6.60209 6.71825 6.80439 6.81936 6.92619 7.01346 7.18402 7.26876 7.47899 7.50334 7.53430 7.72764 7.85688 7.97824 8.14336 8.64858 9.34306 9.51673 10.82098 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.004573 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.651489 B = 6122.049119 C = 7463.055864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.209 3.791 4 H 0.111 0.889 5 C -0.183 4.183 6 N -0.447 5.447 7 C 0.020 3.980 8 C 0.314 3.686 9 N -0.324 5.324 10 N -0.312 5.312 11 C 0.252 3.748 12 C 0.146 3.854 13 C -0.115 4.115 14 C -0.132 4.132 15 C -0.517 4.517 16 H 0.053 0.947 17 C 0.076 3.924 18 N -0.876 5.876 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.277 1.277 23 N -0.464 5.464 24 C 0.119 3.881 25 C -0.137 4.137 26 H 0.099 0.901 27 C -0.147 4.147 28 C 0.049 3.951 29 O -0.383 6.383 30 C 0.064 3.936 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.036 0.964 43 H 0.092 0.908 44 H 0.265 0.735 45 H 0.082 0.918 46 H 0.125 0.875 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 0.482 -0.199 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.103 3.897 4 H 0.129 0.871 5 C -0.242 4.242 6 N -0.170 5.170 7 C -0.128 4.128 8 C -0.042 4.042 9 N -0.168 5.168 10 N -0.149 5.149 11 C -0.015 4.015 12 C 0.143 3.857 13 C -0.173 4.173 14 C -0.190 4.190 15 C -0.556 4.556 16 H 0.071 0.929 17 C -0.127 4.127 18 N -0.513 5.513 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.203 1.203 23 N -0.157 5.157 24 C -0.004 4.004 25 C -0.157 4.157 26 H 0.117 0.883 27 C -0.185 4.185 28 C -0.028 4.028 29 O -0.302 6.302 30 C -0.013 4.013 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.055 0.945 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.143 0.857 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.073 0.927 50 H 0.099 0.901 51 H 0.108 0.892 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.722 1.176 0.814 14.791 hybrid contribution -0.236 -0.693 -2.194 2.313 sum -14.958 0.483 -1.380 15.029 Atomic orbital electron populations 1.24827 0.95698 1.00285 1.00770 1.22708 0.93696 1.00232 1.00263 1.18391 0.83956 0.88708 0.98696 0.87085 1.22540 1.04914 0.96064 1.00634 1.58801 1.06064 1.42317 1.09836 1.22585 1.01905 1.01852 0.86432 1.22155 0.89820 0.87479 1.04759 1.74401 0.96683 1.23364 1.22331 1.74002 1.12216 1.07886 1.20842 1.26092 0.85458 0.95095 0.94886 1.16914 0.84137 0.88310 0.96364 1.21602 0.99262 0.99761 0.96659 1.21986 1.02956 0.98717 0.95385 1.20787 1.13683 1.31136 0.89951 0.92858 1.24817 0.95191 0.95146 0.97576 1.69819 1.15867 1.32320 1.33254 0.86638 0.77764 0.78362 0.85167 1.20199 1.21013 1.20280 1.46065 1.08057 1.14488 1.47065 1.21990 1.01358 0.82736 0.94347 1.23202 0.98968 0.94477 0.99045 0.88301 1.22901 0.98053 0.96964 1.00619 1.23108 0.95818 0.92378 0.91484 1.88859 1.76571 1.19713 1.45051 1.23624 0.91104 0.86979 0.99554 0.76594 0.91712 0.88233 0.92645 0.90981 0.90013 0.93613 0.89702 0.94562 0.96168 0.96917 0.94502 0.88959 0.92504 0.90019 0.85748 0.90404 0.89740 0.92693 0.90097 0.89188 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 19.25 29.55 0.57 -1.44 16 2 C -0.17 -2.04 11.53 -37.12 -0.43 -2.46 16 3 C 0.21 2.81 2.49 -70.51 -0.18 2.63 16 4 H 0.11 1.62 7.98 -51.93 -0.41 1.20 16 5 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 6 N -0.45 -6.34 3.56 -177.99 -0.63 -6.98 16 7 C 0.02 0.24 8.46 60.06 0.51 0.75 16 8 C 0.31 5.55 6.23 -318.88 -1.99 3.56 16 9 N -0.32 -6.56 9.29 30.31 0.28 -6.28 16 10 N -0.31 -7.10 11.45 32.99 0.38 -6.72 16 11 C 0.25 5.49 6.27 -154.02 -0.97 4.52 16 12 C 0.15 3.32 0.49 -156.81 -0.08 3.24 16 13 C -0.11 -2.71 7.69 37.16 0.29 -2.42 16 14 C -0.13 -2.84 7.37 37.16 0.27 -2.56 16 15 C -0.52 -12.42 6.41 -34.44 -0.22 -12.64 16 16 H 0.05 1.30 7.55 -52.48 -0.40 0.91 16 17 C 0.08 1.84 5.15 -17.82 -0.09 1.75 16 18 N -0.88 -21.74 9.51 55.43 0.53 -21.21 16 19 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 N -0.46 -8.54 2.79 -114.09 -0.32 -8.85 16 24 C 0.12 1.85 4.56 -4.04 -0.02 1.83 16 25 C -0.14 -1.98 2.66 -88.61 -0.24 -2.21 16 26 H 0.10 1.64 6.41 -51.93 -0.33 1.31 16 27 C -0.15 -1.74 6.60 -25.20 -0.17 -1.91 16 28 C 0.05 0.57 7.70 37.73 0.29 0.86 16 29 O -0.38 -5.66 11.52 -35.23 -0.41 -6.06 16 30 C 0.06 0.91 5.92 38.21 0.23 1.14 16 31 H 0.22 1.40 7.80 -54.09 -0.42 0.98 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.55 5.85 -51.93 -0.30 1.25 16 34 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 35 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 36 H 0.08 0.87 7.03 -51.93 -0.37 0.50 16 37 H 0.05 0.59 6.77 -51.93 -0.35 0.24 16 38 H 0.08 2.09 6.25 -51.93 -0.32 1.77 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.45 8.07 -51.93 -0.42 0.03 16 41 H 0.01 0.25 8.13 -51.93 -0.42 -0.17 16 42 H 0.04 0.73 4.76 -51.93 -0.25 0.48 16 43 H 0.09 2.15 6.28 -51.93 -0.33 1.82 16 44 H 0.26 6.37 8.31 -40.82 -0.34 6.04 16 45 H 0.08 1.10 5.69 -51.93 -0.30 0.80 16 46 H 0.12 2.16 5.61 -51.93 -0.29 1.87 16 47 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 48 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 52 H 0.07 0.91 7.56 -51.93 -0.39 0.51 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -27.37 395.32 -9.17 -36.54 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.03 Total: 6.83 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.90 Total: -7.41 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.24 Total: -50.04 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.41 Total: -6.06 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.37 -9.17 -36.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515982777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.921 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds