Wall clock time and date at job start Wed Apr 1 2020 04:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47049 * 275.74578 * 3 2 1 5 5 C 1.52997 * 109.47115 * 155.74857 * 3 2 1 6 6 N 1.46894 * 109.47291 * 35.75080 * 3 2 1 7 7 C 1.46900 * 111.00482 * 66.04395 * 6 3 2 8 8 C 1.38575 * 111.00256 * 190.00139 * 6 3 2 9 9 N 1.31217 * 126.47330 * 345.28786 * 8 6 3 10 10 N 1.28531 * 109.86383 * 180.02562 * 9 8 6 11 11 C 1.30288 * 110.05161 * 359.97438 * 10 9 8 12 12 C 1.50706 * 126.34670 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47011 * 0.84187 * 12 11 10 14 14 C 1.53001 * 109.46770 * 120.84012 * 12 11 10 15 15 C 1.50704 * 109.47289 * 240.83967 * 12 11 10 16 16 H 1.08003 * 119.99945 * 0.02562 * 15 12 11 17 17 C 1.37870 * 119.99758 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00126 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99765 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47241 * 59.99996 * 19 17 15 21 21 H 1.48503 * 109.46921 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47289 * 299.99364 * 19 17 15 23 23 N 1.36454 * 126.47912 * 165.57492 * 8 6 3 24 24 C 1.46500 * 127.13479 * 0.02562 * 23 8 6 25 25 C 1.52999 * 109.47361 * 275.27254 * 24 23 8 26 26 H 1.09002 * 110.79954 * 309.39757 * 25 24 23 27 27 C 1.54807 * 110.91076 * 185.76691 * 25 24 23 28 28 C 1.54104 * 104.18642 * 220.91886 * 27 25 24 29 29 O 1.43742 * 107.29686 * 357.97046 * 28 27 25 30 30 C 1.44426 * 106.99833 * 26.48684 * 29 28 27 31 31 H 4.18738 * 15.03931 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47216 * 59.99940 * 5 3 2 33 33 H 1.09001 * 109.47299 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47418 * 300.00379 * 5 3 2 35 35 H 1.08992 * 109.47478 * 189.28472 * 7 6 3 36 36 H 1.09002 * 109.46816 * 309.29143 * 7 6 3 37 37 H 1.09005 * 109.46677 * 69.28193 * 7 6 3 38 38 H 1.08998 * 109.46884 * 173.83733 * 13 12 11 39 39 H 1.09003 * 109.47164 * 293.83808 * 13 12 11 40 40 H 1.09001 * 109.47385 * 53.83466 * 13 12 11 41 41 H 1.08998 * 109.47228 * 306.99159 * 14 12 11 42 42 H 1.08998 * 109.47285 * 66.99499 * 14 12 11 43 43 H 1.09001 * 109.46946 * 186.99461 * 14 12 11 44 44 H 0.96998 * 119.99487 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.47046 * 35.27139 * 24 23 8 46 46 H 1.08996 * 109.47555 * 155.27178 * 24 23 8 47 47 H 1.09000 * 110.48569 * 339.59496 * 27 25 24 48 48 H 1.08999 * 110.48662 * 102.10980 * 27 25 24 49 49 H 1.09000 * 109.87662 * 117.39695 * 28 27 25 50 50 H 1.09002 * 109.87991 * 238.54370 * 28 27 25 51 51 H 1.08997 * 110.65134 * 201.48368 * 30 29 28 52 52 H 1.09003 * 110.60013 * 78.47034 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1021 1.0225 5 6 3.1554 1.3161 -0.5925 6 7 3.1362 -1.1231 -0.8092 7 6 2.7867 -0.9445 -2.2247 8 6 4.5030 -1.2891 -0.6523 9 7 5.3378 -0.4264 -0.1225 10 7 6.5299 -0.9066 -0.1372 11 6 6.5264 -2.0945 -0.6723 12 6 7.7238 -2.9876 -0.8725 13 6 8.9738 -2.2945 -0.3267 14 6 7.5061 -4.3067 -0.1286 15 6 7.9042 -3.2639 -2.3429 16 1 7.2204 -2.8354 -3.0608 17 6 8.9420 -4.0638 -2.7717 18 7 9.7749 -4.5852 -1.8976 19 14 9.1661 -4.4057 -4.5945 20 1 9.3782 -3.1252 -5.3159 21 1 10.3459 -5.2858 -4.7916 22 1 7.9526 -5.0777 -5.1249 23 7 5.2360 -2.3782 -1.0244 24 6 4.7423 -3.5993 -1.6660 25 6 4.2270 -4.5647 -0.5967 26 1 4.9680 -4.7014 0.1909 27 6 3.8303 -5.9233 -1.2240 28 6 2.5267 -6.3083 -0.4980 29 8 2.2601 -5.2833 0.4739 30 6 2.8800 -4.0717 -0.0093 31 1 -1.0500 0.0005 0.0001 32 1 2.7917 2.1500 0.0079 33 1 4.2454 1.3168 -0.5921 34 1 2.7920 1.4189 -1.6150 35 1 3.0126 -1.8591 -2.7729 36 1 1.7231 -0.7224 -2.3111 37 1 3.3651 -0.1194 -2.6405 38 1 9.8188 -2.9816 -0.3711 39 1 9.1914 -1.4116 -0.9277 40 1 8.8017 -1.9965 0.7076 41 1 7.2527 -4.1000 0.9112 42 1 6.6918 -4.8586 -0.5981 43 1 8.4187 -4.9014 -0.1688 44 1 10.5053 -5.1476 -2.1994 45 1 3.9315 -3.3480 -2.3498 46 1 5.5528 -4.0712 -2.2213 47 1 3.6528 -5.8123 -2.2937 48 1 4.6050 -6.6682 -1.0421 49 1 1.7063 -6.3630 -1.2135 50 1 2.6504 -7.2693 0.0012 51 1 3.0512 -3.3741 0.8105 52 1 2.2685 -3.6112 -0.7853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515982777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:38 Heat of formation + Delta-G solvation = 93.257786 kcal Electronic energy + Delta-G solvation = -33293.812132 eV Core-core repulsion = 29296.727975 eV Total energy + Delta-G solvation = -3997.084157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.94589 -40.39932 -39.64345 -37.54823 -36.30635 -34.14903 -33.33309 -33.02277 -30.94216 -30.32526 -30.10418 -27.88853 -27.49429 -27.25117 -26.83846 -24.55091 -23.92271 -23.35915 -21.95799 -21.47305 -20.60457 -18.76918 -18.58133 -18.08089 -17.49731 -17.38691 -16.88407 -16.84262 -16.26331 -16.10851 -15.94839 -15.46237 -15.21749 -15.12013 -14.73405 -14.45307 -14.03252 -13.89167 -13.71970 -13.59272 -13.40748 -13.24417 -13.14933 -12.88805 -12.79597 -12.67077 -12.57969 -12.52227 -12.36561 -12.25795 -12.18588 -11.94491 -11.88471 -11.69530 -11.56561 -11.43911 -11.32066 -11.10500 -11.01079 -10.90551 -10.62290 -10.43372 -10.35344 -9.23969 -8.05325 -6.22357 0.95447 1.21877 1.44989 1.49729 1.54186 1.92399 1.93055 1.99221 2.45381 2.82187 2.99120 3.19130 3.39882 3.49813 3.62184 3.70269 3.82121 3.94322 3.99774 4.06623 4.17650 4.17862 4.29161 4.33942 4.43671 4.48171 4.52758 4.57904 4.72498 4.73786 4.77771 4.81840 4.84550 4.87983 4.90781 4.97106 4.98385 5.06038 5.08578 5.14697 5.16535 5.26108 5.30996 5.37549 5.54190 5.56655 5.61260 5.75153 5.90652 5.97744 6.07876 6.27337 6.32974 6.69591 6.76013 7.45143 7.94608 8.95289 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.004573 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.651489 B = 6122.049119 C = 7463.055864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.215 4.215 3 C 0.212 3.788 4 H 0.090 0.910 5 C -0.175 4.175 6 N -0.441 5.441 7 C 0.019 3.981 8 C 0.337 3.663 9 N -0.348 5.348 10 N -0.344 5.344 11 C 0.232 3.768 12 C 0.144 3.856 13 C -0.103 4.103 14 C -0.116 4.116 15 C -0.521 4.521 16 H 0.047 0.953 17 C 0.041 3.959 18 N -0.895 5.895 19 Si 0.946 3.054 20 H -0.285 1.285 21 H -0.285 1.285 22 H -0.263 1.263 23 N -0.462 5.462 24 C 0.118 3.882 25 C -0.135 4.135 26 H 0.072 0.928 27 C -0.142 4.142 28 C 0.047 3.953 29 O -0.403 6.403 30 C 0.076 3.924 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.010 0.990 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.264 0.736 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.093 0.907 51 H 0.066 0.934 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.447 -0.325 -1.811 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.216 4.216 3 C 0.105 3.895 4 H 0.108 0.892 5 C -0.233 4.233 6 N -0.165 5.165 7 C -0.127 4.127 8 C -0.021 4.021 9 N -0.192 5.192 10 N -0.182 5.182 11 C -0.037 4.037 12 C 0.141 3.859 13 C -0.161 4.161 14 C -0.175 4.175 15 C -0.560 4.560 16 H 0.065 0.935 17 C -0.161 4.161 18 N -0.532 5.532 19 Si 0.772 3.228 20 H -0.211 1.211 21 H -0.211 1.211 22 H -0.188 1.188 23 N -0.154 5.154 24 C -0.004 4.004 25 C -0.154 4.154 26 H 0.090 0.910 27 C -0.180 4.180 28 C -0.030 4.030 29 O -0.323 6.323 30 C -0.001 4.001 31 H 0.270 0.730 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.116 0.884 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.085 0.915 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.126 0.359 -0.801 18.147 hybrid contribution 0.678 -0.402 -1.648 1.827 sum -17.448 -0.042 -2.449 17.619 Atomic orbital electron populations 1.25675 0.96324 0.97546 0.97982 1.22492 0.93517 1.02754 1.02809 1.18228 0.85445 0.88370 0.97412 0.89220 1.22422 1.02863 0.96503 1.01552 1.58971 1.03303 1.42905 1.11287 1.22682 1.03240 1.02032 0.84759 1.22496 0.90899 0.86418 1.02240 1.74367 0.96362 1.24257 1.24176 1.73907 1.13867 1.08673 1.21712 1.25748 0.86529 0.95083 0.96330 1.16811 0.84252 0.88804 0.96027 1.21459 0.99643 0.98685 0.96347 1.21796 1.02420 0.98012 0.95250 1.20858 1.13696 1.31057 0.90352 0.93514 1.25381 0.94956 0.95046 1.00672 1.69923 1.16097 1.32632 1.34527 0.85804 0.78041 0.77681 0.81247 1.21111 1.21067 1.18809 1.46127 1.07087 1.15369 1.46802 1.22153 1.01493 0.81859 0.94851 1.23091 0.98356 0.95843 0.98146 0.91008 1.22919 0.98282 0.95084 1.01685 1.23309 0.96228 0.91947 0.91492 1.88838 1.76643 1.20346 1.46478 1.23441 0.91050 0.86765 0.98833 0.72986 0.90454 0.91199 0.91538 0.90145 0.87590 0.94385 0.90964 0.96248 0.96225 0.97107 0.93139 0.90778 0.92588 0.87286 0.87315 0.88365 0.89698 0.90427 0.88915 0.91532 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 19.25 74.32 1.43 -1.14 16 2 C -0.22 -4.69 11.53 31.12 0.36 -4.33 16 3 C 0.21 5.55 2.49 43.11 0.11 5.66 16 4 H 0.09 2.69 7.98 -2.39 -0.02 2.67 16 5 C -0.17 -4.43 8.37 71.98 0.60 -3.83 16 6 N -0.44 -12.05 3.56 -717.04 -2.55 -14.60 16 7 C 0.02 0.43 8.46 127.69 1.08 1.51 16 8 C 0.34 11.95 6.23 260.11 1.62 13.57 16 9 N -0.35 -14.58 9.29 -58.01 -0.54 -15.12 16 10 N -0.34 -16.30 11.45 -49.54 -0.57 -16.86 16 11 C 0.23 10.40 6.27 137.64 0.86 11.26 16 12 C 0.14 6.75 0.49 -53.67 -0.03 6.73 16 13 C -0.10 -5.09 7.69 71.98 0.55 -4.53 16 14 C -0.12 -5.13 7.37 71.98 0.53 -4.60 16 15 C -0.52 -25.32 6.41 25.60 0.16 -25.16 16 16 H 0.05 2.30 7.55 -2.91 -0.02 2.27 16 17 C 0.04 2.00 5.15 84.65 0.44 2.43 16 18 N -0.89 -44.99 9.51 21.44 0.20 -44.79 16 19 Si 0.95 39.06 29.54 68.60 2.03 41.09 16 20 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.29 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 N -0.46 -17.05 2.79 -514.86 -1.44 -18.49 16 24 C 0.12 3.55 4.56 86.38 0.39 3.95 16 25 C -0.13 -3.73 2.66 -9.49 -0.03 -3.76 16 26 H 0.07 2.40 6.41 -2.39 -0.02 2.38 16 27 C -0.14 -3.01 6.60 31.58 0.21 -2.80 16 28 C 0.05 0.94 7.70 72.36 0.56 1.50 16 29 O -0.40 -11.15 11.52 -148.98 -1.72 -12.86 16 30 C 0.08 2.05 5.92 72.67 0.43 2.48 16 31 H 0.25 1.89 7.80 -4.42 -0.03 1.85 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.23 5.85 -2.39 -0.01 2.22 16 34 H 0.07 1.50 6.54 -2.39 -0.02 1.49 16 35 H 0.08 1.65 5.93 -2.39 -0.01 1.63 16 36 H 0.11 1.88 7.03 -2.39 -0.02 1.86 16 37 H 0.04 0.92 6.77 -2.38 -0.02 0.90 16 38 H 0.07 3.71 6.25 -2.39 -0.01 3.70 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 41 H 0.01 0.43 8.13 -2.39 -0.02 0.42 16 42 H 0.05 2.03 4.76 -2.39 -0.01 2.02 16 43 H 0.07 3.54 6.28 -2.39 -0.01 3.52 16 44 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 45 H 0.11 2.64 5.69 -2.38 -0.01 2.63 16 46 H 0.11 3.68 5.61 -2.39 -0.01 3.67 16 47 H 0.10 1.70 7.86 -2.39 -0.02 1.68 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.08 1.94 7.56 -2.39 -0.02 1.92 16 Total: -1.00 -61.11 395.32 5.63 -55.48 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.92 Total: 27.22 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 9.28 Total: -1.07 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -4.89 Total: -109.87 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.72 Total: -12.86 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -61.11 5.63 -55.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515982777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.739 kcal (2) G-P(sol) polarization free energy of solvation -61.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds