Wall clock time and date at job start Wed Apr 1 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46989 * 92.77975 * 3 2 1 5 5 C 1.52998 * 109.46999 * 212.78113 * 3 2 1 6 6 N 1.46902 * 109.46790 * 332.78094 * 3 2 1 7 7 C 1.46897 * 111.00022 * 298.95118 * 6 3 2 8 8 C 1.38586 * 110.99520 * 174.99916 * 6 3 2 9 9 N 1.31226 * 126.47049 * 62.60958 * 8 6 3 10 10 N 1.28526 * 109.85304 * 180.25743 * 9 8 6 11 11 C 1.30294 * 110.05719 * 359.74199 * 10 9 8 12 12 C 1.50696 * 126.34337 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47143 * 128.57039 * 12 11 10 14 14 C 1.52998 * 109.47235 * 248.56636 * 12 11 10 15 15 C 1.50697 * 109.47590 * 8.56628 * 12 11 10 16 16 H 1.08001 * 119.99965 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00432 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99610 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00279 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47305 * 119.99944 * 19 17 15 22 22 H 1.48501 * 109.46904 * 239.99978 * 19 17 15 23 23 N 1.36450 * 126.47525 * 242.43601 * 8 6 3 24 24 C 1.46500 * 127.13576 * 0.02562 * 23 8 6 25 25 C 1.52994 * 109.47230 * 260.96709 * 24 23 8 26 26 H 1.09005 * 110.80607 * 309.66854 * 25 24 23 27 27 C 1.54811 * 110.91182 * 186.03998 * 25 24 23 28 28 C 1.54102 * 104.19161 * 220.92243 * 27 25 24 29 29 O 1.43740 * 107.29056 * 357.96608 * 28 27 25 30 30 C 1.44421 * 107.00425 * 26.49177 * 29 28 27 31 31 H 4.18736 * 15.03870 * 0.02562 * 4 2 1 32 32 H 1.09003 * 109.46996 * 179.97438 * 5 3 2 33 33 H 1.09005 * 109.47310 * 300.00203 * 5 3 2 34 34 H 1.09003 * 109.47435 * 60.00135 * 5 3 2 35 35 H 1.09000 * 109.47521 * 273.26142 * 7 6 3 36 36 H 1.08998 * 109.46956 * 33.26709 * 7 6 3 37 37 H 1.09005 * 109.46519 * 153.26882 * 7 6 3 38 38 H 1.08994 * 109.47320 * 74.34579 * 13 12 11 39 39 H 1.09005 * 109.47601 * 194.35202 * 13 12 11 40 40 H 1.09003 * 109.46797 * 314.35059 * 13 12 11 41 41 H 1.09000 * 109.46973 * 65.71568 * 14 12 11 42 42 H 1.08993 * 109.47572 * 185.71537 * 14 12 11 43 43 H 1.09007 * 109.47270 * 305.71847 * 14 12 11 44 44 H 0.97001 * 120.00214 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.47427 * 140.96261 * 24 23 8 46 46 H 1.09005 * 109.46699 * 20.96592 * 24 23 8 47 47 H 1.09010 * 110.48437 * 339.59647 * 27 25 24 48 48 H 1.09001 * 110.48827 * 102.10570 * 27 25 24 49 49 H 1.09002 * 109.88004 * 117.38856 * 28 27 25 50 50 H 1.08995 * 109.87378 * 238.54484 * 28 27 25 51 51 H 1.09001 * 110.65396 * 201.48228 * 30 29 28 52 52 H 1.08999 * 110.60460 * 78.47068 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0507 -1.0264 5 6 3.1554 1.2137 0.7810 6 7 3.1362 -1.2308 0.6335 7 6 2.6858 -1.3202 2.0289 8 6 4.5169 -1.3161 0.5509 9 7 5.3830 -0.4884 1.0866 10 7 6.5790 -0.8662 0.8058 11 6 6.5473 -1.9511 0.0850 12 6 7.7388 -2.7053 -0.4466 13 6 7.6154 -4.1835 -0.0719 14 6 7.7913 -2.5679 -1.9695 15 6 9.0002 -2.1387 0.1526 16 1 8.9446 -1.3152 0.8491 17 6 10.2252 -2.6724 -0.1875 18 7 10.2928 -3.6755 -1.0353 19 14 11.7886 -1.9706 0.5557 20 1 11.4431 -0.8547 1.4727 21 1 12.4969 -3.0334 1.3134 22 1 12.6686 -1.4653 -0.5285 23 7 5.2327 -2.2782 -0.1001 24 6 4.7025 -3.4211 -0.8478 25 6 4.7509 -4.6724 0.0312 26 1 5.7403 -4.7985 0.4710 27 6 4.3400 -5.9293 -0.7738 28 6 3.4583 -6.7317 0.2027 29 8 3.4304 -6.0095 1.4452 30 6 3.6596 -4.6187 1.1306 31 1 -1.0500 0.0005 0.0001 32 1 4.2455 1.2139 0.7814 33 1 2.7917 2.1274 0.3110 34 1 2.7922 1.1637 1.8075 35 1 3.3928 -0.7976 2.6732 36 1 1.7012 -0.8621 2.1229 37 1 2.6292 -2.3675 2.3259 38 1 6.8594 -4.6555 -0.6992 39 1 8.5746 -4.6784 -0.2243 40 1 7.3244 -4.2699 0.9750 41 1 7.9808 -1.5277 -2.2341 42 1 8.5914 -3.1945 -2.3635 43 1 6.8391 -2.8836 -2.3959 44 1 11.1546 -4.0513 -1.2743 45 1 5.3050 -3.5815 -1.7419 46 1 3.6708 -3.2194 -1.1363 47 1 3.7693 -5.6461 -1.6584 48 1 5.2207 -6.5055 -1.0574 49 1 2.4481 -6.8203 -0.1972 50 1 3.8854 -7.7222 0.3592 51 1 4.0232 -4.0813 2.0064 52 1 2.7499 -4.1574 0.7462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515982778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:46 Heat of formation + Delta-G solvation = 118.838329 kcal Electronic energy + Delta-G solvation = -33108.756064 eV Core-core repulsion = 29112.781163 eV Total energy + Delta-G solvation = -3995.974901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.48764 -39.43203 -38.46486 -36.04125 -34.82236 -33.18305 -32.03819 -31.27954 -30.05164 -29.40681 -28.50782 -26.35386 -26.14868 -25.97079 -25.17850 -23.53008 -22.67842 -21.86024 -20.79166 -20.36467 -18.97730 -18.08182 -17.29315 -16.55887 -16.30083 -15.89268 -15.66087 -15.40258 -15.13161 -14.98982 -14.49079 -14.36514 -13.87098 -13.74456 -13.38877 -13.11348 -12.80960 -12.79593 -12.35591 -12.24696 -12.22178 -11.92674 -11.83976 -11.59791 -11.49145 -11.39151 -11.26083 -11.11779 -10.84364 -10.78042 -10.65101 -10.52884 -10.45122 -10.34351 -10.20310 -10.03752 -9.94310 -9.77174 -9.63003 -9.50170 -8.93001 -8.57096 -8.41940 -8.18046 -6.06608 -4.12431 2.22313 2.41866 2.70131 2.95282 3.30436 3.39038 3.48052 3.58743 3.87459 3.97649 4.21065 4.41792 4.50624 4.68159 4.83198 4.95213 5.00672 5.07518 5.17762 5.22579 5.23946 5.25599 5.36864 5.46539 5.50705 5.55449 5.59928 5.64275 5.71525 5.74739 5.80018 5.82499 5.92629 5.95749 6.00598 6.10106 6.21502 6.39292 6.45853 6.55918 6.61034 6.63565 6.64872 6.67840 6.83107 7.06059 7.17897 7.28349 7.44334 7.58110 7.74885 7.78552 8.05361 8.26911 8.95136 9.46883 9.56976 10.96766 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.004435 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.725025 B = 6311.514978 C = 8264.746948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.201 3.799 4 H 0.101 0.899 5 C -0.185 4.185 6 N -0.455 5.455 7 C 0.029 3.971 8 C 0.302 3.698 9 N -0.312 5.312 10 N -0.288 5.288 11 C 0.247 3.753 12 C 0.146 3.854 13 C -0.143 4.143 14 C -0.128 4.128 15 C -0.491 4.491 16 H 0.077 0.923 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.466 5.466 24 C 0.125 3.875 25 C -0.161 4.161 26 H 0.125 0.875 27 C -0.146 4.146 28 C 0.049 3.951 29 O -0.380 6.380 30 C 0.058 3.942 31 H 0.218 0.782 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.101 0.899 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.007 0.993 44 H 0.260 0.740 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.432 -1.796 -1.460 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.168 4.168 3 C 0.094 3.906 4 H 0.118 0.882 5 C -0.243 4.243 6 N -0.180 5.180 7 C -0.118 4.118 8 C -0.054 4.054 9 N -0.156 5.156 10 N -0.126 5.126 11 C -0.020 4.020 12 C 0.143 3.857 13 C -0.201 4.201 14 C -0.186 4.186 15 C -0.529 4.529 16 H 0.096 0.904 17 C -0.138 4.138 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.159 5.159 24 C 0.002 3.998 25 C -0.180 4.180 26 H 0.143 0.857 27 C -0.185 4.185 28 C -0.027 4.027 29 O -0.299 6.299 30 C -0.019 4.019 31 H 0.235 0.765 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.119 0.881 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.114 0.886 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.104 0.896 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.974 -1.215 -0.802 17.036 hybrid contribution 0.247 -0.068 -0.264 0.367 sum -16.727 -1.283 -1.066 16.810 Atomic orbital electron populations 1.24837 0.95702 1.00038 1.00945 1.22610 0.93604 1.00397 1.00169 1.18580 0.84307 0.88269 0.99487 0.88151 1.22625 1.05021 0.96526 1.00159 1.58687 1.03311 1.36913 1.19079 1.22523 1.00631 1.02667 0.85990 1.21967 0.90067 0.91851 1.01525 1.74472 0.96691 1.23319 1.21126 1.74152 1.12043 1.11145 1.15222 1.26238 0.84022 0.94864 0.96866 1.16929 0.85753 0.90404 0.92608 1.22275 1.03223 0.97554 0.97063 1.21898 0.99260 1.01374 0.96118 1.21120 0.88514 1.17226 1.26073 0.90444 1.24861 0.98996 0.94894 0.95031 1.69794 1.24895 1.24618 1.33984 0.86411 0.82718 0.79174 0.79096 1.19445 1.21146 1.21110 1.46383 1.07253 1.21477 1.40782 1.21793 1.00729 0.82890 0.94394 1.23748 1.03542 0.93803 0.96903 0.85724 1.22896 1.00786 0.96046 0.98733 1.23110 0.98783 0.96276 0.84577 1.88864 1.93487 1.18946 1.28574 1.23646 0.96894 0.83073 0.98270 0.76523 0.88130 0.92149 0.92061 0.92711 0.90693 0.91087 0.95406 0.88106 0.95402 0.94551 0.88616 0.97422 0.92966 0.88236 0.88750 0.90538 0.89672 0.92599 0.89921 0.89604 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 19.25 29.55 0.57 -1.31 16 2 C -0.17 -1.93 11.15 -37.12 -0.41 -2.35 16 3 C 0.20 2.60 2.78 -70.50 -0.20 2.40 16 4 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 5 C -0.18 -2.41 8.48 37.16 0.32 -2.09 16 6 N -0.46 -6.34 4.68 -177.98 -0.83 -7.17 16 7 C 0.03 0.37 8.48 60.06 0.51 0.88 16 8 C 0.30 5.20 6.25 -318.86 -1.99 3.21 16 9 N -0.31 -6.33 9.30 30.32 0.28 -6.05 16 10 N -0.29 -6.71 11.02 32.99 0.36 -6.34 16 11 C 0.25 5.32 6.30 -154.03 -0.97 4.35 16 12 C 0.15 3.31 0.55 -156.82 -0.09 3.23 16 13 C -0.14 -3.02 6.53 37.16 0.24 -2.78 16 14 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 15 C -0.49 -12.81 7.91 -34.44 -0.27 -13.08 16 16 H 0.08 2.16 6.97 -52.49 -0.37 1.79 16 17 C 0.06 1.61 5.08 -17.82 -0.09 1.52 16 18 N -0.89 -22.86 9.42 55.43 0.52 -22.34 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 N -0.47 -8.20 2.76 -114.09 -0.31 -8.51 16 24 C 0.13 1.77 4.64 -4.04 -0.02 1.75 16 25 C -0.16 -2.19 2.24 -88.61 -0.20 -2.39 16 26 H 0.13 2.03 3.94 -51.93 -0.20 1.83 16 27 C -0.15 -1.59 6.60 -25.20 -0.17 -1.75 16 28 C 0.05 0.54 7.70 37.73 0.29 0.83 16 29 O -0.38 -5.40 11.52 -35.23 -0.41 -5.81 16 30 C 0.06 0.78 6.62 38.21 0.25 1.04 16 31 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 32 H 0.10 1.60 5.65 -51.93 -0.29 1.31 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.77 7.00 -51.93 -0.36 0.40 16 35 H 0.05 0.77 7.32 -51.93 -0.38 0.39 16 36 H 0.07 0.83 6.51 -51.93 -0.34 0.50 16 37 H 0.07 0.86 7.07 -51.93 -0.37 0.50 16 38 H 0.03 0.50 4.84 -51.93 -0.25 0.24 16 39 H 0.10 2.39 5.82 -51.93 -0.30 2.08 16 40 H 0.03 0.59 7.06 -51.93 -0.37 0.22 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 2.24 6.25 -51.93 -0.32 1.92 16 43 H 0.01 0.13 5.91 -51.93 -0.31 -0.18 16 44 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 45 H 0.10 1.41 5.49 -51.93 -0.28 1.13 16 46 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 47 H 0.08 0.69 7.86 -51.92 -0.41 0.29 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.09 1.29 7.64 -51.93 -0.40 0.90 16 52 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -28.60 394.20 -9.25 -37.85 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.86 Total: 5.64 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.93 Total: -9.04 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.02 Total: -50.42 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.41 Total: -5.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.60 -9.25 -37.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515982778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.688 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds