Wall clock time and date at job start Wed Apr 1 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46989 * 92.77975 * 3 2 1 5 5 C 1.52998 * 109.46999 * 212.78113 * 3 2 1 6 6 N 1.46902 * 109.46790 * 332.78094 * 3 2 1 7 7 C 1.46897 * 111.00022 * 298.95118 * 6 3 2 8 8 C 1.38586 * 110.99520 * 174.99916 * 6 3 2 9 9 N 1.31226 * 126.47049 * 62.60958 * 8 6 3 10 10 N 1.28526 * 109.85304 * 180.25743 * 9 8 6 11 11 C 1.30294 * 110.05719 * 359.74199 * 10 9 8 12 12 C 1.50696 * 126.34337 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47143 * 128.57039 * 12 11 10 14 14 C 1.52998 * 109.47235 * 248.56636 * 12 11 10 15 15 C 1.50697 * 109.47590 * 8.56628 * 12 11 10 16 16 H 1.08001 * 119.99965 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00432 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99610 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00279 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47305 * 119.99944 * 19 17 15 22 22 H 1.48501 * 109.46904 * 239.99978 * 19 17 15 23 23 N 1.36450 * 126.47525 * 242.43601 * 8 6 3 24 24 C 1.46500 * 127.13576 * 0.02562 * 23 8 6 25 25 C 1.52994 * 109.47230 * 260.96709 * 24 23 8 26 26 H 1.09005 * 110.80607 * 309.66854 * 25 24 23 27 27 C 1.54811 * 110.91182 * 186.03998 * 25 24 23 28 28 C 1.54102 * 104.19161 * 220.92243 * 27 25 24 29 29 O 1.43740 * 107.29056 * 357.96608 * 28 27 25 30 30 C 1.44421 * 107.00425 * 26.49177 * 29 28 27 31 31 H 4.18736 * 15.03870 * 0.02562 * 4 2 1 32 32 H 1.09003 * 109.46996 * 179.97438 * 5 3 2 33 33 H 1.09005 * 109.47310 * 300.00203 * 5 3 2 34 34 H 1.09003 * 109.47435 * 60.00135 * 5 3 2 35 35 H 1.09000 * 109.47521 * 273.26142 * 7 6 3 36 36 H 1.08998 * 109.46956 * 33.26709 * 7 6 3 37 37 H 1.09005 * 109.46519 * 153.26882 * 7 6 3 38 38 H 1.08994 * 109.47320 * 74.34579 * 13 12 11 39 39 H 1.09005 * 109.47601 * 194.35202 * 13 12 11 40 40 H 1.09003 * 109.46797 * 314.35059 * 13 12 11 41 41 H 1.09000 * 109.46973 * 65.71568 * 14 12 11 42 42 H 1.08993 * 109.47572 * 185.71537 * 14 12 11 43 43 H 1.09007 * 109.47270 * 305.71847 * 14 12 11 44 44 H 0.97001 * 120.00214 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.47427 * 140.96261 * 24 23 8 46 46 H 1.09005 * 109.46699 * 20.96592 * 24 23 8 47 47 H 1.09010 * 110.48437 * 339.59647 * 27 25 24 48 48 H 1.09001 * 110.48827 * 102.10570 * 27 25 24 49 49 H 1.09002 * 109.88004 * 117.38856 * 28 27 25 50 50 H 1.08995 * 109.87378 * 238.54484 * 28 27 25 51 51 H 1.09001 * 110.65396 * 201.48228 * 30 29 28 52 52 H 1.08999 * 110.60460 * 78.47068 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0507 -1.0264 5 6 3.1554 1.2137 0.7810 6 7 3.1362 -1.2308 0.6335 7 6 2.6858 -1.3202 2.0289 8 6 4.5169 -1.3161 0.5509 9 7 5.3830 -0.4884 1.0866 10 7 6.5790 -0.8662 0.8058 11 6 6.5473 -1.9511 0.0850 12 6 7.7388 -2.7053 -0.4466 13 6 7.6154 -4.1835 -0.0719 14 6 7.7913 -2.5679 -1.9695 15 6 9.0002 -2.1387 0.1526 16 1 8.9446 -1.3152 0.8491 17 6 10.2252 -2.6724 -0.1875 18 7 10.2928 -3.6755 -1.0353 19 14 11.7886 -1.9706 0.5557 20 1 11.4431 -0.8547 1.4727 21 1 12.4969 -3.0334 1.3134 22 1 12.6686 -1.4653 -0.5285 23 7 5.2327 -2.2782 -0.1001 24 6 4.7025 -3.4211 -0.8478 25 6 4.7509 -4.6724 0.0312 26 1 5.7403 -4.7985 0.4710 27 6 4.3400 -5.9293 -0.7738 28 6 3.4583 -6.7317 0.2027 29 8 3.4304 -6.0095 1.4452 30 6 3.6596 -4.6187 1.1306 31 1 -1.0500 0.0005 0.0001 32 1 4.2455 1.2139 0.7814 33 1 2.7917 2.1274 0.3110 34 1 2.7922 1.1637 1.8075 35 1 3.3928 -0.7976 2.6732 36 1 1.7012 -0.8621 2.1229 37 1 2.6292 -2.3675 2.3259 38 1 6.8594 -4.6555 -0.6992 39 1 8.5746 -4.6784 -0.2243 40 1 7.3244 -4.2699 0.9750 41 1 7.9808 -1.5277 -2.2341 42 1 8.5914 -3.1945 -2.3635 43 1 6.8391 -2.8836 -2.3959 44 1 11.1546 -4.0513 -1.2743 45 1 5.3050 -3.5815 -1.7419 46 1 3.6708 -3.2194 -1.1363 47 1 3.7693 -5.6461 -1.6584 48 1 5.2207 -6.5055 -1.0574 49 1 2.4481 -6.8203 -0.1972 50 1 3.8854 -7.7222 0.3592 51 1 4.0232 -4.0813 2.0064 52 1 2.7499 -4.1574 0.7462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515982778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:45 Heat of formation + Delta-G solvation = 104.555226 kcal Electronic energy + Delta-G solvation = -33109.375426 eV Core-core repulsion = 29112.781163 eV Total energy + Delta-G solvation = -3996.594263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.97727 -40.46045 -39.61266 -37.66271 -36.25990 -34.17867 -33.27140 -33.04318 -31.05659 -30.38675 -30.00596 -27.86617 -27.60584 -27.14838 -27.01696 -24.67107 -23.78154 -23.33341 -21.90913 -21.71991 -20.50864 -18.96361 -18.51907 -18.07016 -17.47496 -17.25532 -16.98365 -16.81721 -16.45893 -16.13290 -15.79875 -15.50452 -15.33454 -14.94907 -14.66905 -14.58290 -14.08585 -13.86044 -13.71005 -13.50633 -13.40266 -13.28773 -13.14628 -13.01822 -12.91003 -12.65022 -12.57671 -12.49461 -12.40712 -12.31626 -12.02885 -11.93698 -11.83438 -11.78311 -11.66182 -11.39920 -11.29118 -11.13633 -10.91276 -10.69067 -10.63273 -10.34056 -9.89348 -9.74913 -8.04249 -6.14502 0.84927 1.20941 1.41662 1.46209 1.58183 1.88637 1.90727 2.01357 2.48822 2.82633 2.95723 3.22013 3.35209 3.46241 3.62510 3.72612 3.83768 3.96276 4.03307 4.05263 4.18624 4.21939 4.28513 4.31452 4.40482 4.44651 4.50586 4.63424 4.64138 4.70861 4.74202 4.78775 4.84034 4.84486 4.87030 4.90414 4.93510 4.98131 5.08499 5.09175 5.15685 5.25776 5.27976 5.33989 5.48780 5.56085 5.62314 5.81185 5.88517 5.99014 6.10019 6.32363 6.42441 6.68180 6.89122 7.51164 7.96071 8.96734 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.004435 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.725025 B = 6311.514978 C = 8264.746948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.215 4.215 3 C 0.204 3.796 4 H 0.092 0.908 5 C -0.178 4.178 6 N -0.446 5.446 7 C 0.032 3.968 8 C 0.326 3.674 9 N -0.338 5.338 10 N -0.333 5.333 11 C 0.231 3.769 12 C 0.143 3.857 13 C -0.124 4.124 14 C -0.116 4.116 15 C -0.512 4.512 16 H 0.049 0.951 17 C 0.033 3.967 18 N -0.899 5.899 19 Si 0.942 3.058 20 H -0.283 1.283 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.460 5.460 24 C 0.122 3.878 25 C -0.161 4.161 26 H 0.095 0.905 27 C -0.139 4.139 28 C 0.044 3.956 29 O -0.403 6.403 30 C 0.066 3.934 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.262 0.738 45 H 0.103 0.897 46 H 0.120 0.880 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.787 -2.863 -2.665 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.215 4.215 3 C 0.097 3.903 4 H 0.110 0.890 5 C -0.237 4.237 6 N -0.171 5.171 7 C -0.115 4.115 8 C -0.031 4.031 9 N -0.181 5.181 10 N -0.171 5.171 11 C -0.037 4.037 12 C 0.140 3.860 13 C -0.182 4.182 14 C -0.174 4.174 15 C -0.550 4.550 16 H 0.067 0.933 17 C -0.167 4.167 18 N -0.538 5.538 19 Si 0.770 3.230 20 H -0.209 1.209 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.152 5.152 24 C 0.000 4.000 25 C -0.180 4.180 26 H 0.113 0.887 27 C -0.177 4.177 28 C -0.032 4.032 29 O -0.323 6.323 30 C -0.011 4.011 31 H 0.271 0.729 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.138 0.862 47 H 0.121 0.879 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.081 0.919 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.334 -2.300 -2.019 20.563 hybrid contribution 1.121 0.284 0.139 1.165 sum -19.212 -2.016 -1.880 19.409 Atomic orbital electron populations 1.25688 0.96320 0.97150 0.98101 1.22359 0.93375 1.03021 1.02769 1.18443 0.85889 0.87259 0.98709 0.88964 1.22512 1.02837 0.97651 1.00685 1.58942 1.00665 1.37690 1.19824 1.22542 1.01085 1.03057 0.84771 1.22293 0.91194 0.90414 0.99160 1.74434 0.96318 1.24645 1.22747 1.74049 1.13945 1.12529 1.16567 1.25825 0.85248 0.94949 0.97686 1.16827 0.85146 0.91114 0.92917 1.22064 1.02683 0.96498 0.96950 1.21715 1.00307 0.99810 0.95574 1.21205 0.90655 1.16958 1.26226 0.93273 1.25301 1.00608 0.95291 0.95480 1.69857 1.25298 1.24644 1.34000 0.85744 0.80588 0.78306 0.78410 1.20878 1.20484 1.20458 1.46445 1.05939 1.22179 1.40613 1.22096 1.01949 0.81880 0.94094 1.23614 1.02101 0.94925 0.97343 0.88691 1.22915 1.01297 0.94324 0.99165 1.23334 1.00185 0.96247 0.83423 1.88842 1.93612 1.19202 1.30595 1.23517 0.97225 0.83087 0.97243 0.72913 0.91318 0.90689 0.91756 0.94581 0.88529 0.90456 0.92262 0.90595 0.96600 0.96433 0.90229 0.94244 0.92784 0.87877 0.86196 0.87907 0.89413 0.90371 0.89030 0.91931 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 19.25 74.32 1.43 -0.84 16 2 C -0.21 -4.33 11.15 31.13 0.35 -3.98 16 3 C 0.20 5.02 2.78 43.11 0.12 5.14 16 4 H 0.09 2.39 8.11 -2.39 -0.02 2.37 16 5 C -0.18 -4.61 8.48 71.98 0.61 -4.00 16 6 N -0.45 -11.89 4.68 -717.00 -3.35 -15.24 16 7 C 0.03 0.78 8.48 127.69 1.08 1.87 16 8 C 0.33 11.29 6.25 260.11 1.63 12.92 16 9 N -0.34 -14.29 9.30 -58.00 -0.54 -14.83 16 10 N -0.33 -16.31 11.02 -49.55 -0.55 -16.85 16 11 C 0.23 10.26 6.30 137.64 0.87 11.13 16 12 C 0.14 6.66 0.55 -53.68 -0.03 6.63 16 13 C -0.12 -5.31 6.53 71.98 0.47 -4.84 16 14 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 15 C -0.51 -27.84 7.91 25.60 0.20 -27.64 16 16 H 0.05 2.91 6.97 -2.91 -0.02 2.89 16 17 C 0.03 1.72 5.08 84.66 0.43 2.15 16 18 N -0.90 -46.58 9.42 21.45 0.20 -46.38 16 19 Si 0.94 43.84 29.54 68.60 2.03 45.87 16 20 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 N -0.46 -16.07 2.76 -514.86 -1.42 -17.50 16 24 C 0.12 3.18 4.64 86.38 0.40 3.58 16 25 C -0.16 -4.10 2.24 -9.49 -0.02 -4.12 16 26 H 0.10 3.05 3.94 -2.38 -0.01 3.05 16 27 C -0.14 -2.56 6.60 31.59 0.21 -2.35 16 28 C 0.04 0.83 7.70 72.35 0.56 1.39 16 29 O -0.40 -10.73 11.52 -148.98 -1.72 -12.45 16 30 C 0.07 1.69 6.62 72.67 0.48 2.17 16 31 H 0.25 1.48 7.80 -4.42 -0.03 1.45 16 32 H 0.07 2.27 5.65 -2.39 -0.01 2.25 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.06 1.58 7.00 -2.39 -0.02 1.57 16 35 H 0.04 1.01 7.32 -2.39 -0.02 1.00 16 36 H 0.10 1.93 6.51 -2.39 -0.02 1.91 16 37 H 0.08 1.77 7.07 -2.38 -0.02 1.76 16 38 H 0.06 2.09 4.84 -2.39 -0.01 2.08 16 39 H 0.08 3.65 5.82 -2.38 -0.01 3.63 16 40 H 0.02 0.68 7.06 -2.39 -0.02 0.66 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 3.74 6.25 -2.39 -0.01 3.73 16 43 H 0.04 1.42 5.91 -2.38 -0.01 1.41 16 44 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16 45 H 0.10 2.65 5.49 -2.39 -0.01 2.63 16 46 H 0.12 2.56 7.85 -2.38 -0.02 2.54 16 47 H 0.10 1.39 7.86 -2.38 -0.02 1.37 16 48 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.06 1.88 7.64 -2.39 -0.02 1.86 16 52 H 0.08 1.80 7.89 -2.39 -0.02 1.78 16 Total: -1.00 -65.58 394.20 4.95 -60.63 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.93 Total: 22.03 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 9.37 Total: -5.28 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -5.66 Total: -110.79 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.72 Total: -12.45 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -65.58 4.95 -60.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515982778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.187 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds