Wall clock time and date at job start Wed Apr 1 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47127 * 9.73744 * 3 2 1 5 5 C 1.53001 * 109.47291 * 129.73723 * 3 2 1 6 6 N 1.46898 * 109.47077 * 249.74052 * 3 2 1 7 7 C 1.46903 * 111.00404 * 56.04408 * 6 3 2 8 8 C 1.38583 * 111.00022 * 180.02562 * 6 3 2 9 9 N 1.31212 * 126.47094 * 339.95120 * 8 6 3 10 10 N 1.28525 * 109.86112 * 180.02562 * 9 8 6 11 11 C 1.30296 * 110.05530 * 0.02562 * 10 9 8 12 12 C 1.50701 * 126.34903 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47099 * 118.89658 * 12 11 10 14 14 C 1.53005 * 109.46856 * 238.90086 * 12 11 10 15 15 C 1.50699 * 109.47093 * 358.89531 * 12 11 10 16 16 H 1.07997 * 120.00079 * 0.59684 * 15 12 11 17 17 C 1.37876 * 119.99736 * 180.59102 * 15 12 11 18 18 N 1.31520 * 119.99725 * 192.46597 * 17 15 12 19 19 Si 1.86797 * 120.00193 * 12.46764 * 17 15 12 20 20 H 1.48505 * 109.46949 * 89.07808 * 19 17 15 21 21 H 1.48501 * 109.47370 * 209.07379 * 19 17 15 22 22 H 1.48497 * 109.47334 * 329.08044 * 19 17 15 23 23 N 1.36454 * 126.47351 * 160.27433 * 8 6 3 24 24 C 1.46498 * 127.14043 * 359.97438 * 23 8 6 25 25 C 1.53006 * 109.46476 * 299.01376 * 24 23 8 26 26 H 1.08997 * 110.75466 * 59.21159 * 25 24 23 27 27 C 1.55311 * 110.84090 * 182.90253 * 25 24 23 28 28 C 1.54951 * 100.93837 * 152.32329 * 27 25 24 29 29 O 1.43649 * 105.13660 * 323.55352 * 28 27 25 30 30 C 1.43242 * 109.96867 * 24.43018 * 29 28 27 31 31 H 4.18741 * 15.03909 * 0.02562 * 4 2 1 32 32 H 1.08997 * 109.46966 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.46831 * 300.00590 * 5 3 2 34 34 H 1.09004 * 109.46347 * 60.00015 * 5 3 2 35 35 H 1.08994 * 109.47367 * 187.76676 * 7 6 3 36 36 H 1.08997 * 109.46883 * 307.76864 * 7 6 3 37 37 H 1.08993 * 109.46609 * 67.76578 * 7 6 3 38 38 H 1.09000 * 109.46893 * 198.42928 * 13 12 11 39 39 H 1.08995 * 109.47181 * 318.43281 * 13 12 11 40 40 H 1.09007 * 109.46757 * 78.43272 * 13 12 11 41 41 H 1.09004 * 109.46772 * 303.40094 * 14 12 11 42 42 H 1.08993 * 109.47448 * 63.40337 * 14 12 11 43 43 H 1.08995 * 109.46945 * 183.40975 * 14 12 11 44 44 H 0.97001 * 119.99305 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.46987 * 59.00998 * 24 23 8 46 46 H 1.09000 * 109.47339 * 179.01774 * 24 23 8 47 47 H 1.09001 * 111.12545 * 270.23464 * 27 25 24 48 48 H 1.09000 * 111.12899 * 34.40668 * 27 25 24 49 49 H 1.09004 * 110.30674 * 204.63699 * 28 27 25 50 50 H 1.09005 * 110.39264 * 82.51245 * 28 27 25 51 51 H 1.09001 * 109.82582 * 238.77013 * 30 29 28 52 52 H 1.09000 * 109.82577 * 117.80314 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0120 -0.1738 5 6 3.1556 0.9230 -1.1093 6 7 3.1354 0.4805 1.2993 7 6 2.5891 -0.3266 2.3985 8 6 4.5208 0.4944 1.3338 9 7 5.3273 -0.1800 0.5488 10 7 6.5491 0.0695 0.8599 11 6 6.5942 0.9107 1.8540 12 6 7.8382 1.4526 2.5098 13 6 7.8760 2.9740 2.3528 14 6 7.8284 1.0933 3.9970 15 6 9.0544 0.8496 1.8554 16 1 8.9385 0.1519 1.0392 17 6 10.3151 1.1888 2.2986 18 7 11.3719 0.8652 1.5857 19 14 10.5223 2.1079 3.9115 20 1 10.6426 1.1327 5.0250 21 1 11.7482 2.9438 3.8511 22 1 9.3408 2.9778 4.1409 23 7 5.3036 1.2074 2.1945 24 6 4.8545 2.1064 3.2605 25 6 4.0432 3.2525 2.6528 26 1 3.1777 2.8690 2.1125 27 6 3.6120 4.2657 3.7481 28 6 3.5036 5.5689 2.9168 29 8 4.5689 5.4908 1.9563 30 6 4.9253 4.1218 1.7312 31 1 -1.0500 -0.0009 -0.0006 32 1 4.2456 0.9231 -1.1095 33 1 2.7924 0.5670 -2.0733 34 1 2.7918 1.9357 -0.9353 35 1 2.8541 0.1307 3.3516 36 1 1.5040 -0.3761 2.3083 37 1 3.0039 -1.3334 2.3508 38 1 8.8919 3.3314 2.5211 39 1 7.5582 3.2433 1.3456 40 1 7.2048 3.4311 3.0800 41 1 6.9184 1.4779 4.4577 42 1 7.8625 0.0097 4.1093 43 1 8.6972 1.5365 4.4836 44 1 12.2589 1.1035 1.8977 45 1 4.2319 1.5535 3.9638 46 1 5.7210 2.5119 3.7829 47 1 2.6484 3.9929 4.1782 48 1 4.3743 4.3557 4.5220 49 1 3.6364 6.4395 3.5592 50 1 2.5399 5.6170 2.4098 51 1 5.9769 3.9688 1.9738 52 1 4.7429 3.8589 0.6892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515982780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:57 Heat of formation + Delta-G solvation = 114.960497 kcal Electronic energy + Delta-G solvation = -33338.179539 eV Core-core repulsion = 29342.036483 eV Total energy + Delta-G solvation = -3996.143057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.05847 -40.47113 -39.51233 -37.91401 -36.41630 -34.25693 -33.76977 -33.06727 -31.60424 -30.53752 -30.29250 -28.39382 -27.50286 -27.04509 -26.33916 -25.01145 -24.12258 -23.34035 -22.32130 -21.26400 -21.04084 -18.91069 -18.35585 -17.86986 -17.77899 -17.62295 -17.31698 -16.87631 -16.67963 -16.06985 -15.94677 -15.76453 -15.35773 -15.08496 -14.93965 -14.57934 -14.35819 -14.29896 -13.98833 -13.77470 -13.67861 -13.45392 -13.26572 -13.12920 -13.00482 -12.71904 -12.71015 -12.43646 -12.40177 -12.22799 -12.21347 -12.04623 -11.91977 -11.80714 -11.67152 -11.50593 -11.22510 -11.02223 -10.87298 -10.70331 -10.58799 -10.44828 -10.33848 -9.35862 -8.23313 -6.26458 0.85682 1.10510 1.35056 1.38488 1.50842 1.85025 1.88356 1.97069 2.36741 2.74670 2.89771 3.09590 3.31421 3.33575 3.42928 3.61569 3.76216 3.79663 3.97812 4.04910 4.09397 4.17433 4.19609 4.25509 4.30650 4.37279 4.41693 4.46221 4.47990 4.57514 4.60241 4.62838 4.70160 4.75010 4.77736 4.81174 4.83394 4.87409 4.91063 4.96716 4.97919 5.05044 5.09501 5.14624 5.20989 5.29837 5.53505 5.55057 5.63168 5.67934 6.01804 6.22355 6.43351 6.64905 6.85959 7.35206 7.95177 8.94239 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.004538 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.714596 B = 6168.698168 C = 7654.508817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.220 4.220 3 C 0.210 3.790 4 H 0.066 0.934 5 C -0.137 4.137 6 N -0.441 5.441 7 C 0.024 3.976 8 C 0.347 3.653 9 N -0.358 5.358 10 N -0.325 5.325 11 C 0.230 3.770 12 C 0.121 3.879 13 C -0.138 4.138 14 C -0.153 4.153 15 C -0.507 4.507 16 H 0.040 0.960 17 C 0.017 3.983 18 N -0.946 5.946 19 Si 0.932 3.068 20 H -0.276 1.276 21 H -0.309 1.309 22 H -0.198 1.198 23 N -0.467 5.467 24 C 0.106 3.894 25 C -0.127 4.127 26 H 0.105 0.895 27 C -0.134 4.134 28 C 0.042 3.958 29 O -0.407 6.407 30 C 0.040 3.960 31 H 0.257 0.743 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.264 0.736 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.117 0.883 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.067 0.933 51 H 0.076 0.924 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.591 6.734 9.299 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.221 4.221 3 C 0.104 3.896 4 H 0.083 0.917 5 C -0.194 4.194 6 N -0.166 5.166 7 C -0.122 4.122 8 C -0.010 4.010 9 N -0.201 5.201 10 N -0.162 5.162 11 C -0.039 4.039 12 C 0.118 3.882 13 C -0.196 4.196 14 C -0.210 4.210 15 C -0.546 4.546 16 H 0.058 0.942 17 C -0.180 4.180 18 N -0.585 5.585 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.238 1.238 22 H -0.121 1.121 23 N -0.161 5.161 24 C -0.015 4.015 25 C -0.146 4.146 26 H 0.123 0.877 27 C -0.172 4.172 28 C -0.034 4.034 29 O -0.327 6.327 30 C -0.036 4.036 31 H 0.274 0.726 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.136 0.864 48 H 0.112 0.888 49 H 0.121 0.879 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -26.034 6.429 8.135 28.023 hybrid contribution 0.859 -0.337 0.636 1.121 sum -25.176 6.093 8.771 27.347 Atomic orbital electron populations 1.25709 0.96248 0.98297 0.96385 1.22365 0.93346 1.02753 1.03631 1.18197 0.85638 0.98459 0.87318 0.91661 1.21759 1.00911 0.99282 0.97478 1.58923 0.98129 1.53567 1.06026 1.22645 1.01999 0.94817 0.92785 1.22392 0.90880 0.94926 0.92781 1.74509 0.96860 1.22852 1.25913 1.74085 1.11859 1.16210 1.14012 1.25059 0.85690 0.97529 0.95577 1.17029 0.85897 0.92940 0.92336 1.22466 1.01877 0.94960 1.00312 1.22493 1.01694 1.01677 0.95127 1.20903 0.89421 1.26517 1.17720 0.94187 1.25843 0.95011 0.96551 1.00619 1.70114 0.99161 1.49735 1.39504 0.86537 0.78028 0.79881 0.79639 1.20299 1.23770 1.12091 1.46290 1.05246 1.35919 1.28609 1.22404 1.01254 0.90197 0.87680 1.23034 0.98935 0.94867 0.97778 0.87664 1.23295 1.04756 0.92250 0.96892 1.23630 0.90336 0.99361 0.90083 1.88403 1.55375 1.25204 1.63739 1.23467 1.00288 0.81477 0.98408 0.72649 0.93526 0.90198 0.91830 0.89173 0.87533 0.95332 0.92321 0.94245 0.90879 0.90292 0.93387 0.92608 0.92659 0.86049 0.87068 0.86428 0.88765 0.87932 0.91456 0.90587 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 19.24 74.32 1.43 -0.60 16 2 C -0.22 -4.37 11.03 31.13 0.34 -4.02 16 3 C 0.21 5.34 2.20 43.11 0.09 5.44 16 4 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 5 C -0.14 -3.73 8.97 71.98 0.65 -3.09 16 6 N -0.44 -11.00 3.72 -717.02 -2.67 -13.67 16 7 C 0.02 0.46 9.34 127.69 1.19 1.65 16 8 C 0.35 11.55 5.76 260.11 1.50 13.05 16 9 N -0.36 -15.32 9.98 -58.00 -0.58 -15.90 16 10 N -0.32 -16.19 10.98 -49.53 -0.54 -16.74 16 11 C 0.23 9.83 6.24 137.64 0.86 10.69 16 12 C 0.12 5.32 0.47 -53.67 -0.03 5.29 16 13 C -0.14 -5.39 5.88 71.98 0.42 -4.97 16 14 C -0.15 -5.61 7.47 71.98 0.54 -5.07 16 15 C -0.51 -29.05 8.52 25.60 0.22 -28.83 16 16 H 0.04 2.70 7.18 -2.91 -0.02 2.68 16 17 C 0.02 0.96 5.27 84.65 0.45 1.41 16 18 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 19 Si 0.93 41.39 22.78 68.60 1.56 42.96 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.31 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.20 -7.16 4.56 99.48 0.45 -6.70 16 23 N -0.47 -14.92 2.68 -514.85 -1.38 -16.31 16 24 C 0.11 2.26 4.66 86.38 0.40 2.66 16 25 C -0.13 -2.47 3.00 -9.53 -0.03 -2.50 16 26 H 0.11 2.14 7.16 -2.39 -0.02 2.12 16 27 C -0.13 -1.64 6.62 32.06 0.21 -1.43 16 28 C 0.04 0.67 7.78 72.65 0.56 1.24 16 29 O -0.41 -10.80 11.36 -148.98 -1.69 -12.49 16 30 C 0.04 1.09 7.17 72.45 0.52 1.61 16 31 H 0.26 1.14 7.80 -4.42 -0.03 1.11 16 32 H 0.05 1.61 6.21 -2.39 -0.01 1.60 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.36 6.85 -2.39 -0.02 1.35 16 36 H 0.11 1.57 6.70 -2.39 -0.02 1.56 16 37 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 38 H 0.06 2.40 4.51 -2.39 -0.01 2.39 16 39 H 0.04 1.62 7.10 -2.39 -0.02 1.60 16 40 H 0.07 2.22 4.96 -2.38 -0.01 2.20 16 41 H 0.08 2.13 5.41 -2.38 -0.01 2.12 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 2.06 2.46 -2.39 -0.01 2.06 16 44 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.12 1.79 6.94 -2.39 -0.02 1.77 16 46 H 0.11 2.34 3.80 -2.39 -0.01 2.33 16 47 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.09 0.99 8.04 -2.39 -0.02 0.97 16 49 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.08 2.31 3.28 -2.39 -0.01 2.30 16 52 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -80.54 383.62 5.03 -75.52 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.69 Total: 23.70 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 9.33 Total: -7.46 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -4.87 Total: -122.22 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.69 Total: -12.49 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.56 Total: 42.96 kcal Total: -80.54 5.03 -75.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515982780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.479 kcal (2) G-P(sol) polarization free energy of solvation -80.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds