Wall clock time and date at job start Wed Apr 1 2020 04:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47143 * 224.19995 * 3 2 1 5 5 C 1.53009 * 109.46946 * 344.19802 * 3 2 1 6 6 N 1.46895 * 109.47038 * 104.19709 * 3 2 1 7 7 C 1.46899 * 111.00379 * 56.04806 * 6 3 2 8 8 C 1.38588 * 110.99982 * 179.97438 * 6 3 2 9 9 N 1.31215 * 126.47328 * 333.54709 * 8 6 3 10 10 N 1.28520 * 109.86315 * 179.97438 * 9 8 6 11 11 C 1.30298 * 110.05242 * 359.97438 * 10 9 8 12 12 C 1.50704 * 126.34660 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46887 * 90.02945 * 12 11 10 14 14 C 1.50697 * 109.47322 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99869 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00659 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99684 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00599 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47038 * 120.00238 * 18 16 14 21 21 H 1.48494 * 109.47179 * 240.00279 * 18 16 14 22 22 N 1.36457 * 126.47392 * 153.85892 * 8 6 3 23 23 C 1.46506 * 127.13637 * 0.02562 * 22 8 6 24 24 C 1.52994 * 109.46811 * 274.38046 * 23 22 8 25 25 H 1.09005 * 109.48151 * 304.97712 * 24 23 22 26 26 C 1.53097 * 109.48111 * 184.94540 * 24 23 22 27 27 C 1.53174 * 109.16643 * 182.40950 * 26 24 23 28 28 C 1.53178 * 109.03763 * 56.97566 * 27 26 24 29 29 C 1.53088 * 109.16742 * 303.02231 * 28 27 26 30 30 O 1.42902 * 109.41435 * 57.60500 * 29 28 27 31 31 H 4.18743 * 15.03830 * 359.97438 * 4 2 1 32 32 H 1.08999 * 109.46847 * 299.99919 * 5 3 2 33 33 H 1.08997 * 109.47042 * 60.00131 * 5 3 2 34 34 H 1.09001 * 109.46496 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47707 * 177.63542 * 7 6 3 36 36 H 1.09008 * 109.46831 * 297.63163 * 7 6 3 37 37 H 1.08999 * 109.47106 * 57.62231 * 7 6 3 38 38 H 1.09002 * 109.47078 * 330.03048 * 12 11 10 39 39 H 1.08996 * 109.47107 * 210.02849 * 12 11 10 40 40 H 1.09003 * 109.47400 * 59.99667 * 13 12 11 41 41 H 1.09004 * 109.47260 * 300.00123 * 13 12 11 42 42 H 0.97000 * 119.99960 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.47029 * 34.37783 * 23 22 8 44 44 H 1.08992 * 109.46487 * 154.37885 * 23 22 8 45 45 H 1.09009 * 109.51913 * 302.31421 * 26 24 23 46 46 H 1.08997 * 109.52172 * 62.50086 * 26 24 23 47 47 H 1.09003 * 109.54121 * 297.11230 * 27 26 24 48 48 H 1.09000 * 109.61673 * 176.88941 * 27 26 24 49 49 H 1.08997 * 109.52029 * 183.11433 * 28 27 26 50 50 H 1.08997 * 109.52123 * 62.92700 * 28 27 26 51 51 H 1.09001 * 109.47886 * 297.62866 * 29 28 27 52 52 H 1.08991 * 109.48372 * 177.59228 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7375 0.7164 5 6 3.1566 -1.3872 0.3928 6 7 3.1355 0.3405 -1.3426 7 6 2.5883 1.6275 -1.7924 8 6 4.5209 0.3508 -1.3784 9 7 5.3255 0.5808 -0.3677 10 7 6.5480 0.5113 -0.7582 11 6 6.5955 0.2346 -2.0306 12 6 7.8410 0.0696 -2.8629 13 6 8.2806 -1.3956 -2.8379 14 6 9.5257 -1.5607 -3.6706 15 1 9.9603 -0.7059 -4.1677 16 6 10.1108 -2.8027 -3.7973 17 7 9.5820 -3.8435 -3.1916 18 14 11.6538 -3.0075 -4.8301 19 1 12.0447 -1.6939 -5.4018 20 1 12.7550 -3.5234 -3.9778 21 1 11.3885 -3.9679 -5.9311 22 7 5.3058 0.1294 -2.4724 23 6 4.8592 -0.1643 -3.8365 24 6 4.6165 -1.6680 -3.9809 25 1 5.5165 -2.2109 -3.6922 26 6 4.2695 -1.9917 -5.4364 27 6 3.9691 -3.4886 -5.5608 28 6 2.8346 -3.8522 -4.5980 29 6 3.2369 -3.4567 -3.1749 30 8 3.5324 -2.0591 -3.1359 31 1 -1.0500 -0.0002 -0.0009 32 1 2.7934 -1.6394 1.3891 33 1 2.7936 -2.1241 -0.3236 34 1 4.2466 -1.3868 0.3924 35 1 2.9994 1.8751 -2.7711 36 1 1.5027 1.5564 -1.8618 37 1 2.8564 2.4059 -1.0780 38 1 8.6357 0.6945 -2.4553 39 1 7.6338 0.3693 -3.8902 40 1 7.4859 -2.0205 -3.2454 41 1 8.4878 -1.6953 -1.8106 42 1 9.9934 -4.7174 -3.2810 43 1 3.9337 0.3743 -4.0397 44 1 5.6255 0.1497 -4.5451 45 1 3.3931 -1.4180 -5.7382 46 1 5.1127 -1.7349 -6.0776 47 1 4.8608 -4.0617 -5.3067 48 1 3.6675 -3.7175 -6.5829 49 1 2.6516 -4.9259 -4.6398 50 1 1.9293 -3.3161 -4.8829 51 1 4.1189 -4.0231 -2.8758 52 1 2.4162 -3.6740 -2.4915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516688690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:14 Heat of formation + Delta-G solvation = 86.415940 kcal Electronic energy + Delta-G solvation = -32648.099796 eV Core-core repulsion = 28650.718954 eV Total energy + Delta-G solvation = -3997.380842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.59413 -39.26823 -38.23693 -35.14117 -34.08320 -33.51099 -33.15632 -31.75593 -31.26114 -30.50778 -28.71854 -27.30394 -25.75419 -24.93579 -24.21959 -23.84087 -22.60836 -21.87716 -20.56221 -20.13315 -19.78850 -17.95142 -17.05463 -16.62796 -16.26273 -16.24536 -15.92076 -15.52521 -14.94719 -14.88631 -14.54302 -14.43916 -14.34726 -13.68593 -13.55708 -13.32493 -13.04720 -12.76469 -12.65512 -12.55387 -12.38448 -12.21213 -12.19461 -11.68863 -11.53348 -11.37064 -11.22994 -11.08113 -11.03293 -11.00994 -10.89359 -10.78768 -10.64179 -10.38825 -10.32933 -10.20638 -9.98576 -9.78586 -9.64965 -9.29660 -9.18941 -8.98501 -8.42909 -7.98115 -6.07606 -4.11414 2.15009 2.31540 2.75924 2.89456 3.26367 3.32130 3.35081 3.38331 3.80820 3.90364 4.23872 4.39045 4.65818 4.80853 4.84092 4.86381 4.89321 4.99062 5.09653 5.15364 5.21359 5.27842 5.30319 5.32942 5.34393 5.39172 5.55721 5.60751 5.63204 5.66120 5.68298 5.76498 5.86295 5.90484 5.93670 5.93948 6.00186 6.07028 6.13135 6.26157 6.31748 6.36837 6.40789 6.47469 6.68763 6.75635 7.00667 7.36399 7.47948 7.54710 7.56152 7.68423 7.90257 8.27716 8.94790 9.24758 9.53224 11.03234 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.003835 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.545196 B = 7299.584374 C = 8689.345078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.210 3.790 4 H 0.081 0.919 5 C -0.138 4.138 6 N -0.439 5.439 7 C 0.031 3.969 8 C 0.350 3.650 9 N -0.326 5.326 10 N -0.295 5.295 11 C 0.209 3.791 12 C -0.031 4.031 13 C 0.033 3.967 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.285 1.285 22 N -0.465 5.465 23 C 0.125 3.875 24 C 0.073 3.927 25 H 0.078 0.922 26 C -0.143 4.143 27 C -0.121 4.121 28 C -0.153 4.153 29 C 0.062 3.938 30 O -0.354 6.354 31 H 0.217 0.783 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.261 0.739 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.050 0.950 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 5.128 -2.572 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.103 3.897 4 H 0.098 0.902 5 C -0.195 4.195 6 N -0.164 5.164 7 C -0.117 4.117 8 C -0.006 4.006 9 N -0.170 5.170 10 N -0.134 5.134 11 C -0.058 4.058 12 C -0.071 4.071 13 C -0.005 4.005 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.211 1.211 22 N -0.159 5.159 23 C 0.002 3.998 24 C 0.014 3.986 25 H 0.096 0.904 26 C -0.182 4.182 27 C -0.159 4.159 28 C -0.191 4.191 29 C -0.015 4.015 30 O -0.273 6.273 31 H 0.234 0.766 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.945 5.050 -1.349 19.653 hybrid contribution 0.467 -0.355 -1.655 1.755 sum -18.478 4.695 -3.004 19.300 Atomic orbital electron populations 1.24801 0.95661 1.01529 0.99792 1.22660 0.93660 0.99794 1.00504 1.18389 0.83955 0.99608 0.87735 0.90158 1.21782 1.02637 0.94105 1.01014 1.58544 1.00179 1.31058 1.26578 1.22466 1.01022 0.87858 1.00357 1.21968 0.89907 1.03740 0.84994 1.74500 0.96881 1.21518 1.24086 1.74000 1.11636 1.19471 1.08249 1.25540 0.85931 1.01175 0.93169 1.20433 0.88164 1.03220 0.95297 1.19083 0.96123 0.87076 0.98215 1.21170 1.10284 0.94219 1.30409 0.92304 1.24991 0.97376 0.96018 0.95766 1.69981 1.40167 0.99715 1.43062 0.86541 0.83267 0.78171 0.80070 1.19630 1.20933 1.21076 1.46111 1.06486 1.53602 1.09665 1.21850 1.01670 0.95761 0.80527 1.22477 0.91566 0.94099 0.90465 0.90409 1.22085 1.02380 0.97257 0.96456 1.21549 0.99029 0.95852 0.99467 1.22165 0.98987 1.01416 0.96486 1.22502 1.00253 0.82890 0.95889 1.88079 1.51395 1.23174 1.64617 0.76575 0.91860 0.91452 0.90748 0.91374 0.89944 0.94338 0.89334 0.91426 0.96725 0.95660 0.92974 0.88639 0.87322 0.91232 0.90381 0.91198 0.91591 0.91278 0.91418 0.93212 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 19.25 29.55 0.57 -1.39 16 2 C -0.17 -1.99 11.19 -37.12 -0.42 -2.41 16 3 C 0.21 2.87 2.22 -70.50 -0.16 2.71 16 4 H 0.08 1.15 7.88 -51.93 -0.41 0.74 16 5 C -0.14 -1.97 8.99 37.16 0.33 -1.64 16 6 N -0.44 -6.22 4.42 -177.97 -0.79 -7.01 16 7 C 0.03 0.35 9.14 60.06 0.55 0.90 16 8 C 0.35 5.95 5.52 -318.86 -1.76 4.19 16 9 N -0.33 -6.41 10.39 30.32 0.31 -6.10 16 10 N -0.29 -6.33 12.18 32.99 0.40 -5.93 16 11 C 0.21 4.10 7.32 -154.02 -1.13 2.97 16 12 C -0.03 -0.62 5.52 -27.88 -0.15 -0.78 16 13 C 0.03 0.82 4.95 -27.89 -0.14 0.68 16 14 C -0.52 -13.90 9.11 -34.44 -0.31 -14.22 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 N -0.47 -7.82 2.78 -114.08 -0.32 -8.14 16 23 C 0.13 1.69 5.73 -4.04 -0.02 1.67 16 24 C 0.07 1.04 2.89 -26.68 -0.08 0.96 16 25 H 0.08 1.40 6.74 -51.93 -0.35 1.05 16 26 C -0.14 -1.66 5.42 -26.59 -0.14 -1.80 16 27 C -0.12 -1.39 6.03 -26.55 -0.16 -1.55 16 28 C -0.15 -1.65 6.14 -26.59 -0.16 -1.81 16 29 C 0.06 0.79 6.84 37.20 0.25 1.04 16 30 O -0.35 -5.16 9.81 -35.23 -0.35 -5.51 16 31 H 0.22 1.30 7.80 -54.09 -0.42 0.88 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.28 6.46 -51.93 -0.34 0.95 16 35 H 0.07 0.74 7.25 -51.93 -0.38 0.36 16 36 H 0.08 0.84 7.08 -51.92 -0.37 0.48 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.07 1.18 7.19 -51.93 -0.37 0.81 16 40 H 0.01 0.37 6.74 -51.93 -0.35 0.02 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.10 1.11 7.30 -51.93 -0.38 0.73 16 44 H 0.11 1.32 7.13 -51.93 -0.37 0.95 16 45 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 418.91 15.07 6.31 6.31 Total: -1.00 -31.92 418.91 -10.50 -42.42 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.77 Total: 2.13 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.02 Total: -8.91 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.35 Total: -52.25 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.35 Total: -5.51 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.92 -10.50 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516688690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.838 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds