Wall clock time and date at job start Wed Apr 1 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47143 * 224.19995 * 3 2 1 5 5 C 1.53009 * 109.46946 * 344.19802 * 3 2 1 6 6 N 1.46895 * 109.47038 * 104.19709 * 3 2 1 7 7 C 1.46899 * 111.00379 * 56.04806 * 6 3 2 8 8 C 1.38588 * 110.99982 * 179.97438 * 6 3 2 9 9 N 1.31215 * 126.47328 * 333.54709 * 8 6 3 10 10 N 1.28520 * 109.86315 * 179.97438 * 9 8 6 11 11 C 1.30298 * 110.05242 * 359.97438 * 10 9 8 12 12 C 1.50704 * 126.34660 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46887 * 90.02945 * 12 11 10 14 14 C 1.50697 * 109.47322 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99869 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00659 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99684 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00599 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47038 * 120.00238 * 18 16 14 21 21 H 1.48494 * 109.47179 * 240.00279 * 18 16 14 22 22 N 1.36457 * 126.47392 * 153.85892 * 8 6 3 23 23 C 1.46506 * 127.13637 * 0.02562 * 22 8 6 24 24 C 1.52994 * 109.46811 * 274.38046 * 23 22 8 25 25 H 1.09005 * 109.48151 * 304.97712 * 24 23 22 26 26 C 1.53097 * 109.48111 * 184.94540 * 24 23 22 27 27 C 1.53174 * 109.16643 * 182.40950 * 26 24 23 28 28 C 1.53178 * 109.03763 * 56.97566 * 27 26 24 29 29 C 1.53088 * 109.16742 * 303.02231 * 28 27 26 30 30 O 1.42902 * 109.41435 * 57.60500 * 29 28 27 31 31 H 4.18743 * 15.03830 * 359.97438 * 4 2 1 32 32 H 1.08999 * 109.46847 * 299.99919 * 5 3 2 33 33 H 1.08997 * 109.47042 * 60.00131 * 5 3 2 34 34 H 1.09001 * 109.46496 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47707 * 177.63542 * 7 6 3 36 36 H 1.09008 * 109.46831 * 297.63163 * 7 6 3 37 37 H 1.08999 * 109.47106 * 57.62231 * 7 6 3 38 38 H 1.09002 * 109.47078 * 330.03048 * 12 11 10 39 39 H 1.08996 * 109.47107 * 210.02849 * 12 11 10 40 40 H 1.09003 * 109.47400 * 59.99667 * 13 12 11 41 41 H 1.09004 * 109.47260 * 300.00123 * 13 12 11 42 42 H 0.97000 * 119.99960 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.47029 * 34.37783 * 23 22 8 44 44 H 1.08992 * 109.46487 * 154.37885 * 23 22 8 45 45 H 1.09009 * 109.51913 * 302.31421 * 26 24 23 46 46 H 1.08997 * 109.52172 * 62.50086 * 26 24 23 47 47 H 1.09003 * 109.54121 * 297.11230 * 27 26 24 48 48 H 1.09000 * 109.61673 * 176.88941 * 27 26 24 49 49 H 1.08997 * 109.52029 * 183.11433 * 28 27 26 50 50 H 1.08997 * 109.52123 * 62.92700 * 28 27 26 51 51 H 1.09001 * 109.47886 * 297.62866 * 29 28 27 52 52 H 1.08991 * 109.48372 * 177.59228 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7375 0.7164 5 6 3.1566 -1.3872 0.3928 6 7 3.1355 0.3405 -1.3426 7 6 2.5883 1.6275 -1.7924 8 6 4.5209 0.3508 -1.3784 9 7 5.3255 0.5808 -0.3677 10 7 6.5480 0.5113 -0.7582 11 6 6.5955 0.2346 -2.0306 12 6 7.8410 0.0696 -2.8629 13 6 8.2806 -1.3956 -2.8379 14 6 9.5257 -1.5607 -3.6706 15 1 9.9603 -0.7059 -4.1677 16 6 10.1108 -2.8027 -3.7973 17 7 9.5820 -3.8435 -3.1916 18 14 11.6538 -3.0075 -4.8301 19 1 12.0447 -1.6939 -5.4018 20 1 12.7550 -3.5234 -3.9778 21 1 11.3885 -3.9679 -5.9311 22 7 5.3058 0.1294 -2.4724 23 6 4.8592 -0.1643 -3.8365 24 6 4.6165 -1.6680 -3.9809 25 1 5.5165 -2.2109 -3.6922 26 6 4.2695 -1.9917 -5.4364 27 6 3.9691 -3.4886 -5.5608 28 6 2.8346 -3.8522 -4.5980 29 6 3.2369 -3.4567 -3.1749 30 8 3.5324 -2.0591 -3.1359 31 1 -1.0500 -0.0002 -0.0009 32 1 2.7934 -1.6394 1.3891 33 1 2.7936 -2.1241 -0.3236 34 1 4.2466 -1.3868 0.3924 35 1 2.9994 1.8751 -2.7711 36 1 1.5027 1.5564 -1.8618 37 1 2.8564 2.4059 -1.0780 38 1 8.6357 0.6945 -2.4553 39 1 7.6338 0.3693 -3.8902 40 1 7.4859 -2.0205 -3.2454 41 1 8.4878 -1.6953 -1.8106 42 1 9.9934 -4.7174 -3.2810 43 1 3.9337 0.3743 -4.0397 44 1 5.6255 0.1497 -4.5451 45 1 3.3931 -1.4180 -5.7382 46 1 5.1127 -1.7349 -6.0776 47 1 4.8608 -4.0617 -5.3067 48 1 3.6675 -3.7175 -6.5829 49 1 2.6516 -4.9259 -4.6398 50 1 1.9293 -3.3161 -4.8829 51 1 4.1189 -4.0231 -2.8758 52 1 2.4162 -3.6740 -2.4915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516688690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:12 Heat of formation + Delta-G solvation = 69.633329 kcal Electronic energy + Delta-G solvation = -32648.827544 eV Core-core repulsion = 28650.718954 eV Total energy + Delta-G solvation = -3998.108590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.02263 -40.34801 -39.36862 -36.53615 -35.83450 -34.52107 -34.32408 -33.44751 -32.46499 -31.54885 -30.31960 -28.45020 -27.36126 -26.28878 -25.28621 -24.97976 -23.79560 -23.66023 -21.84715 -21.28047 -21.16233 -18.86963 -18.64343 -18.15931 -17.64365 -17.42876 -17.05028 -16.71231 -16.51448 -16.09921 -15.94870 -15.53163 -15.42520 -15.09704 -14.96008 -14.61192 -14.35846 -14.16403 -13.86814 -13.72197 -13.56600 -13.40757 -13.29914 -13.19456 -12.89469 -12.74107 -12.68941 -12.56277 -12.45056 -12.29168 -12.10838 -11.98231 -11.88789 -11.84644 -11.59237 -11.46173 -11.35879 -11.27286 -11.16886 -10.93046 -10.57074 -10.38623 -10.29624 -9.36480 -8.19213 -6.31157 0.75621 1.15199 1.41778 1.43900 1.56108 1.81822 1.87973 1.92362 2.42077 2.72839 2.81687 3.15147 3.36468 3.46398 3.63496 3.68940 3.85553 3.89421 3.90235 4.00350 4.05698 4.12489 4.18597 4.22560 4.25525 4.32633 4.41015 4.55039 4.59655 4.61896 4.67160 4.68001 4.77177 4.79883 4.84866 4.87079 4.92499 4.93494 5.01218 5.06366 5.09832 5.10745 5.12950 5.17786 5.36263 5.47811 5.57022 5.61193 5.66317 5.80030 6.16780 6.22909 6.27826 6.69119 6.84852 7.38705 7.76640 8.92706 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.003835 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.545196 B = 7299.584374 C = 8689.345078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.216 4.216 3 C 0.214 3.786 4 H 0.068 0.932 5 C -0.130 4.130 6 N -0.437 5.437 7 C 0.031 3.969 8 C 0.369 3.631 9 N -0.356 5.356 10 N -0.331 5.331 11 C 0.196 3.804 12 C -0.016 4.016 13 C 0.047 3.953 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.255 1.255 20 H -0.285 1.285 21 H -0.278 1.278 22 N -0.462 5.462 23 C 0.120 3.880 24 C 0.077 3.923 25 H 0.026 0.974 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.143 4.143 29 C 0.057 3.943 30 O -0.364 6.364 31 H 0.257 0.743 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.098 0.902 40 H -0.004 1.004 41 H -0.023 1.023 42 H 0.262 0.738 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.019 0.981 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.834 6.376 -5.026 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.217 4.217 3 C 0.107 3.893 4 H 0.085 0.915 5 C -0.188 4.188 6 N -0.162 5.162 7 C -0.116 4.116 8 C 0.011 3.989 9 N -0.200 5.200 10 N -0.170 5.170 11 C -0.073 4.073 12 C -0.055 4.055 13 C 0.008 3.992 14 C -0.572 4.572 15 H 0.091 0.909 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.179 1.179 20 H -0.211 1.211 21 H -0.204 1.204 22 N -0.154 5.154 23 C -0.002 4.002 24 C 0.018 3.982 25 H 0.044 0.956 26 C -0.174 4.174 27 C -0.162 4.162 28 C -0.180 4.180 29 C -0.019 4.019 30 O -0.283 6.283 31 H 0.273 0.727 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.014 0.986 41 H -0.004 1.004 42 H 0.070 0.930 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.108 0.892 49 H 0.100 0.900 50 H 0.104 0.896 51 H 0.037 0.963 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.623 6.318 -3.818 22.848 hybrid contribution 1.133 -0.799 -0.804 1.603 sum -20.490 5.519 -4.622 21.718 Atomic orbital electron populations 1.25670 0.96235 0.98425 0.96759 1.22387 0.93392 1.02615 1.03295 1.18190 0.85723 0.98282 0.87099 0.91465 1.21679 1.00045 0.95074 1.01956 1.58771 0.98019 1.32434 1.26977 1.22571 1.02163 0.86248 1.00618 1.22288 0.91010 1.01252 0.84319 1.74411 0.96676 1.23466 1.25460 1.73892 1.13019 1.20648 1.09406 1.25314 0.86946 1.02122 0.92881 1.20159 0.88543 0.99663 0.97186 1.18822 0.95411 0.90051 0.94879 1.21600 1.10692 0.94724 1.30223 0.90898 1.25950 1.00838 0.95716 0.97019 1.70140 1.42010 1.00312 1.44817 0.85407 0.78688 0.78796 0.78225 1.17859 1.21138 1.20399 1.46218 1.05465 1.52878 1.10882 1.22218 1.03462 0.95504 0.79036 1.22366 0.89621 0.93944 0.92259 0.95571 1.22057 1.03597 0.97651 0.94117 1.21583 0.98166 0.95464 1.00936 1.22098 0.99127 1.02443 0.94365 1.22604 0.99391 0.81908 0.98035 1.88048 1.51062 1.23961 1.65250 0.72732 0.90255 0.91921 0.94523 0.90267 0.87852 0.94670 0.89343 0.88406 0.98615 1.00435 0.92966 0.85753 0.85685 0.88566 0.90020 0.94148 0.89236 0.90033 0.89641 0.96282 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 19.25 74.32 1.43 -0.98 16 2 C -0.22 -4.76 11.19 31.13 0.35 -4.41 16 3 C 0.21 5.84 2.22 43.11 0.10 5.93 16 4 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 5 C -0.13 -3.89 8.99 71.99 0.65 -3.24 16 6 N -0.44 -12.14 4.42 -716.99 -3.17 -15.30 16 7 C 0.03 0.65 9.14 127.69 1.17 1.82 16 8 C 0.37 12.79 5.52 260.11 1.44 14.23 16 9 N -0.36 -14.76 10.39 -58.00 -0.60 -15.37 16 10 N -0.33 -15.04 12.18 -49.54 -0.60 -15.64 16 11 C 0.20 8.03 7.32 137.64 1.01 9.03 16 12 C -0.02 -0.65 5.52 29.85 0.16 -0.48 16 13 C 0.05 2.44 4.95 29.85 0.15 2.58 16 14 C -0.53 -29.03 9.11 25.60 0.23 -28.80 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.00 0.15 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 18 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 N -0.46 -15.79 2.78 -514.85 -1.43 -17.22 16 23 C 0.12 3.11 5.73 86.38 0.50 3.60 16 24 C 0.08 2.22 2.89 30.62 0.09 2.31 16 25 H 0.03 1.03 6.74 -2.38 -0.02 1.01 16 26 C -0.14 -2.94 5.42 30.68 0.17 -2.78 16 27 C -0.12 -2.71 6.03 30.71 0.19 -2.53 16 28 C -0.14 -2.86 6.14 30.68 0.19 -2.67 16 29 C 0.06 1.50 6.84 72.01 0.49 1.99 16 30 O -0.36 -10.65 9.81 -148.98 -1.46 -12.11 16 31 H 0.26 1.64 7.80 -4.42 -0.03 1.61 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.36 6.46 -2.39 -0.02 1.34 16 35 H 0.08 1.50 7.25 -2.39 -0.02 1.48 16 36 H 0.10 1.78 7.08 -2.38 -0.02 1.77 16 37 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.10 3.36 7.19 -2.39 -0.02 3.34 16 40 H 0.00 -0.25 6.74 -2.39 -0.02 -0.26 16 41 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.12 2.53 7.30 -2.39 -0.02 2.52 16 44 H 0.13 2.82 7.13 -2.39 -0.02 2.80 16 45 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -74.59 418.91 4.69 -69.90 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.89 Total: 20.53 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 8.76 Total: -3.77 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -5.52 Total: -119.60 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.46 Total: -12.11 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.59 4.69 -69.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516688690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.531 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds