Wall clock time and date at job start Wed Apr 1 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46838 * 2 1 4 4 C 1.50697 * 109.47071 * 119.99258 * 2 1 3 5 5 H 1.08003 * 119.99525 * 114.44655 * 4 2 1 6 6 C 1.37880 * 120.00557 * 294.44944 * 4 2 1 7 7 N 1.31514 * 119.99899 * 163.84175 * 6 4 2 8 8 Si 1.86797 * 119.99631 * 343.56403 * 6 4 2 9 9 H 1.48500 * 109.46874 * 180.27955 * 8 6 4 10 10 H 1.48506 * 109.47166 * 300.27210 * 8 6 4 11 11 H 1.48497 * 109.47428 * 60.27555 * 8 6 4 12 12 N 1.46893 * 109.47425 * 239.99894 * 2 1 3 13 13 C 1.46906 * 110.99779 * 306.04582 * 12 2 1 14 14 C 1.38586 * 110.99833 * 69.99571 * 12 2 1 15 15 N 1.31215 * 126.47419 * 346.11537 * 14 12 2 16 16 N 1.28527 * 109.85660 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05569 * 0.02562 * 16 15 14 18 18 C 1.50703 * 126.34584 * 180.02562 * 17 16 15 19 19 C 1.54636 * 111.03728 * 57.02262 * 18 17 16 20 20 C 1.51107 * 104.72262 * 217.33382 * 19 18 17 21 21 C 1.30527 * 111.10710 * 16.43734 * 20 19 18 22 22 C 1.51103 * 111.10076 * 359.97438 * 21 20 19 23 23 N 1.36455 * 126.47040 * 165.80304 * 14 12 2 24 24 C 1.46500 * 127.13541 * 0.03464 * 23 14 12 25 25 C 1.52999 * 109.47282 * 273.67789 * 24 23 14 26 26 H 1.08999 * 110.75363 * 57.71115 * 25 24 23 27 27 C 1.55312 * 110.84789 * 181.40555 * 25 24 23 28 28 C 1.54940 * 100.94264 * 152.32357 * 27 25 24 29 29 O 1.43646 * 105.13474 * 323.55422 * 28 27 25 30 30 C 1.43234 * 109.97315 * 24.42607 * 29 28 27 31 31 H 1.09001 * 109.47068 * 56.68333 * 1 2 3 32 32 H 1.08997 * 109.46817 * 176.68541 * 1 2 3 33 33 H 1.09005 * 109.46562 * 296.68559 * 1 2 3 34 34 H 0.96996 * 120.00116 * 354.62577 * 7 6 4 35 35 H 1.09001 * 109.46785 * 61.55741 * 13 12 2 36 36 H 1.09002 * 109.46929 * 181.54952 * 13 12 2 37 37 H 1.08994 * 109.47209 * 301.55345 * 13 12 2 38 38 H 1.09003 * 110.91539 * 181.03104 * 18 17 16 39 39 H 1.08997 * 110.38915 * 336.14196 * 19 18 17 40 40 H 1.08994 * 110.38871 * 98.52374 * 19 18 17 41 41 H 1.07997 * 124.44578 * 196.45378 * 20 19 18 42 42 H 1.08001 * 124.44810 * 179.97438 * 21 20 19 43 43 H 1.09001 * 110.38305 * 224.75352 * 22 21 20 44 44 H 1.09005 * 110.48112 * 102.43011 * 22 21 20 45 45 H 1.09004 * 109.47412 * 33.67995 * 24 23 14 46 46 H 1.09001 * 109.46842 * 153.67820 * 24 23 14 47 47 H 1.09008 * 111.12002 * 270.24241 * 27 25 24 48 48 H 1.08993 * 111.12582 * 34.39965 * 27 25 24 49 49 H 1.08996 * 110.31036 * 204.63749 * 28 27 25 50 50 H 1.09003 * 110.39305 * 82.51382 * 28 27 25 51 51 H 1.08993 * 109.83164 * 238.77468 * 30 29 28 52 52 H 1.09004 * 109.82797 * 117.80467 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.5773 -1.6377 1.1340 6 6 1.7963 -0.1762 2.4796 7 7 1.9409 -0.9232 3.5522 8 14 1.2785 1.6106 2.6486 9 1 1.0951 1.9390 4.0852 10 1 2.3289 2.4872 2.0708 11 1 0.0002 1.8263 1.9243 12 7 2.0198 -0.6925 -1.1993 13 6 1.4344 -2.0355 -1.3077 14 6 1.7680 0.0525 -2.3405 15 7 0.9649 1.0857 -2.4361 16 7 0.9720 1.5342 -3.6406 17 6 1.7731 0.8194 -4.3788 18 6 2.0573 1.0238 -5.8446 19 6 2.5890 2.4509 -6.1132 20 6 1.9723 2.8481 -7.4342 21 6 0.9688 2.0704 -7.7373 22 6 0.7494 1.0243 -6.6692 23 7 2.3132 -0.1462 -3.5755 24 6 3.2747 -1.1820 -3.9616 25 6 4.6951 -0.6927 -3.6721 26 1 4.8081 -0.4365 -2.6187 27 6 5.7439 -1.7542 -4.1029 28 6 6.9651 -0.8522 -4.4123 29 8 6.4136 0.3383 -4.9969 30 6 5.0564 0.5087 -4.5717 31 1 -0.3633 0.5645 -0.8588 32 1 -0.3633 -1.0259 -0.0594 33 1 -0.3633 0.4616 0.9183 34 1 2.1372 -1.8688 3.4618 35 1 0.3512 -1.9535 -1.3971 36 1 1.8348 -2.5363 -2.1892 37 1 1.6829 -2.6130 -0.4173 38 1 2.7526 0.2704 -6.2149 39 1 2.2674 3.1307 -5.3243 40 1 3.6763 2.4430 -6.1889 41 1 2.3167 3.6678 -8.0473 42 1 0.3735 2.1625 -8.6337 43 1 0.5857 0.0469 -7.1230 44 1 -0.0968 1.2955 -6.0379 45 1 3.0796 -2.0898 -3.3907 46 1 3.1731 -1.3933 -5.0261 47 1 5.9617 -2.4444 -3.2878 48 1 5.4165 -2.2912 -4.9930 49 1 7.6315 -1.3470 -5.1189 50 1 7.5007 -0.6099 -3.4944 51 1 4.3973 0.5324 -5.4394 52 1 4.9596 1.4359 -4.0069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519674908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:42 Heat of formation + Delta-G solvation = 73.895903 kcal Electronic energy + Delta-G solvation = -32614.096900 eV Core-core repulsion = 28616.173149 eV Total energy + Delta-G solvation = -3997.923751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.79512 -39.68139 -38.76532 -37.46818 -35.56147 -32.89172 -32.33064 -31.11251 -29.76911 -29.41182 -28.36039 -28.07151 -26.46636 -25.45171 -24.62335 -22.88630 -22.66249 -21.65674 -20.97639 -19.81905 -19.11127 -18.97443 -17.51632 -17.28845 -16.67105 -16.54479 -16.23967 -15.68776 -15.43778 -15.40078 -14.94170 -14.40750 -14.02227 -13.61039 -13.52859 -13.35448 -13.01478 -12.80446 -12.63918 -12.41539 -12.31761 -12.22999 -12.06735 -11.97295 -11.73735 -11.72537 -11.60211 -11.43466 -11.39198 -11.32315 -11.13347 -10.99091 -10.91477 -10.42645 -10.08496 -9.95041 -9.82846 -9.70609 -9.62255 -9.10880 -9.03908 -8.84064 -8.32850 -7.63872 -6.51331 -4.13302 1.98174 2.12563 2.42830 3.18198 3.44144 3.48897 3.61052 3.64111 4.05831 4.16465 4.24190 4.39213 4.43531 4.48885 4.50808 4.57131 4.69733 4.77700 4.91043 4.96946 5.06717 5.09755 5.20729 5.22210 5.28062 5.42342 5.43417 5.46416 5.49534 5.53021 5.61782 5.64125 5.69447 5.76152 5.80191 5.84904 5.90242 5.96863 6.10989 6.20080 6.31315 6.34480 6.42375 6.65339 6.70595 6.72035 6.73346 6.80450 7.12449 7.17555 7.56321 7.65263 8.15237 8.34370 8.84100 9.16636 9.52655 10.88808 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.003967 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.022915 B = 7057.264915 C = 8572.088102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.205 3.795 3 H 0.042 0.958 4 C -0.594 4.594 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.902 5.902 8 Si 1.033 2.967 9 H -0.285 1.285 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.445 5.445 13 C 0.036 3.964 14 C 0.379 3.621 15 N -0.320 5.320 16 N -0.279 5.279 17 C 0.163 3.837 18 C -0.002 4.002 19 C -0.092 4.092 20 C -0.161 4.161 21 C -0.165 4.165 22 C -0.089 4.089 23 N -0.482 5.482 24 C 0.124 3.876 25 C -0.139 4.139 26 H 0.105 0.895 27 C -0.147 4.147 28 C 0.052 3.948 29 O -0.383 6.383 30 C 0.054 3.946 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.268 0.732 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.063 0.937 51 H 0.073 0.927 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -1.737 -22.943 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.100 3.900 3 H 0.060 0.940 4 C -0.632 4.632 5 H 0.083 0.917 6 C -0.165 4.165 7 N -0.536 5.536 8 Si 0.861 3.139 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.168 5.168 13 C -0.111 4.111 14 C 0.024 3.976 15 N -0.164 5.164 16 N -0.118 5.118 17 C -0.104 4.104 18 C -0.023 4.023 19 C -0.130 4.130 20 C -0.179 4.179 21 C -0.183 4.183 22 C -0.127 4.127 23 N -0.178 5.178 24 C 0.000 4.000 25 C -0.159 4.159 26 H 0.123 0.877 27 C -0.185 4.185 28 C -0.025 4.025 29 O -0.303 6.303 30 C -0.023 4.023 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.948 0.567 -21.432 21.800 hybrid contribution 0.499 -2.365 -1.247 2.720 sum 4.447 -1.798 -22.680 23.181 Atomic orbital electron populations 1.22935 0.99529 1.00499 1.02002 1.19667 0.90767 0.94696 0.84920 0.93979 1.21891 1.40245 1.11007 0.90027 0.91701 1.25594 0.93989 1.05294 0.91667 1.70866 1.44233 1.07866 1.30613 0.84233 0.77746 0.75820 0.76064 1.21082 1.20862 1.19505 1.59239 1.56248 1.02820 0.98534 1.22401 0.97668 0.88703 1.02328 1.23251 0.92535 0.96611 0.85205 1.74820 1.18358 1.12146 1.11028 1.73900 1.17360 1.22573 0.97990 1.24165 0.99676 0.91122 0.95461 1.20303 0.98292 0.98716 0.84947 1.21471 1.00324 0.94641 0.96542 1.23215 0.98025 0.99764 0.96888 1.23197 0.98460 0.97807 0.98866 1.21402 0.97320 0.98530 0.95430 1.46189 1.35682 1.26652 1.09239 1.21797 0.86349 0.90138 1.01693 1.23147 0.93998 0.95950 1.02791 0.87719 1.23256 0.94691 0.97946 1.02587 1.23367 0.95648 0.84935 0.98519 1.88399 1.26307 1.44338 1.71225 1.23341 0.83415 0.97967 0.97553 0.92592 0.93954 0.91999 0.92206 0.94304 0.93473 0.88722 0.89107 0.89112 0.90741 0.85620 0.85673 0.91095 0.89151 0.87976 0.89018 0.89079 0.90086 0.89571 0.91853 0.90906 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.39 8.16 37.16 0.30 -4.09 16 2 C 0.21 4.92 1.60 -68.87 -0.11 4.81 16 3 H 0.04 1.10 6.64 -51.93 -0.34 0.75 16 4 C -0.59 -15.96 8.33 -34.44 -0.29 -16.25 16 5 H 0.06 1.84 7.15 -52.48 -0.38 1.46 16 6 C 0.04 1.14 5.33 -17.82 -0.09 1.04 16 7 N -0.90 -26.92 13.70 55.43 0.76 -26.16 16 8 Si 1.03 25.45 26.30 -169.99 -4.47 20.98 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.27 5.62 56.52 0.32 -5.96 16 12 N -0.45 -9.05 4.74 -176.08 -0.83 -9.88 16 13 C 0.04 0.64 8.62 60.07 0.52 1.15 16 14 C 0.38 7.26 6.68 -318.87 -2.13 5.13 16 15 N -0.32 -6.74 9.31 30.32 0.28 -6.45 16 16 N -0.28 -5.21 11.79 32.99 0.39 -4.83 16 17 C 0.16 2.42 6.23 -154.02 -0.96 1.46 16 18 C 0.00 -0.02 2.53 -90.06 -0.23 -0.25 16 19 C -0.09 -0.98 6.22 -26.82 -0.17 -1.15 16 20 C -0.16 -1.48 10.78 -35.69 -0.38 -1.86 16 21 C -0.17 -1.48 10.78 -35.70 -0.38 -1.87 16 22 C -0.09 -0.90 6.37 -26.84 -0.17 -1.08 16 23 N -0.48 -7.17 2.66 -114.08 -0.30 -7.48 16 24 C 0.12 1.35 5.23 -4.04 -0.02 1.33 16 25 C -0.14 -1.53 3.26 -88.67 -0.29 -1.82 16 26 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 27 C -0.15 -1.20 6.62 -24.48 -0.16 -1.37 16 28 C 0.05 0.47 7.78 38.18 0.30 0.77 16 29 O -0.38 -4.61 11.36 -35.23 -0.40 -5.01 16 30 C 0.05 0.62 6.86 37.88 0.26 0.88 16 31 H 0.06 1.27 5.94 -51.93 -0.31 0.96 16 32 H 0.04 0.93 6.16 -51.93 -0.32 0.61 16 33 H 0.06 1.48 4.71 -51.93 -0.24 1.24 16 34 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 35 H 0.04 0.70 6.23 -51.93 -0.32 0.37 16 36 H 0.05 0.66 5.84 -51.93 -0.30 0.36 16 37 H 0.09 1.78 6.71 -51.93 -0.35 1.44 16 38 H 0.09 0.83 5.48 -51.93 -0.28 0.54 16 39 H 0.09 1.16 7.75 -51.93 -0.40 0.76 16 40 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.11 7.70 -51.93 -0.40 0.71 16 45 H 0.10 1.09 5.85 -51.93 -0.30 0.78 16 46 H 0.09 0.76 7.04 -51.93 -0.37 0.39 16 47 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 48 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.75 4.02 -51.93 -0.21 0.55 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -32.19 387.43 -10.70 -42.90 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.96 Total: 3.24 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -4.01 Total: -13.15 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.29 Total: -54.80 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.40 Total: -5.01 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.47 Total: 20.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.19 -10.70 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519674908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.793 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds