Wall clock time and date at job start Wed Apr 1 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99672 * 2 1 4 4 C 1.50691 * 119.99992 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47231 * 95.00236 * 4 2 1 6 6 C 1.36741 * 127.13555 * 274.09008 * 5 4 2 7 7 C 1.50698 * 126.34796 * 0.05875 * 6 5 4 8 8 H 1.09001 * 109.64102 * 359.57119 * 7 6 5 9 9 C 1.53031 * 109.64041 * 238.94586 * 7 6 5 10 10 C 1.50069 * 110.14512 * 190.88028 * 9 7 6 11 11 C 1.29441 * 124.07900 * 17.12192 * 10 9 7 12 12 C 1.50070 * 124.07357 * 359.53893 * 11 10 9 13 13 H 1.08997 * 109.36003 * 256.92018 * 12 11 10 14 14 O 1.42905 * 109.24725 * 137.26184 * 12 11 10 15 15 C 1.53025 * 110.14970 * 17.12786 * 12 11 10 16 16 N 1.30298 * 107.30567 * 180.02562 * 6 5 4 17 17 N 1.28523 * 110.05150 * 359.72924 * 16 6 5 18 18 C 1.31217 * 109.86224 * 0.45276 * 17 16 6 19 19 N 1.38577 * 126.47509 * 179.82315 * 18 17 16 20 20 C 1.46904 * 111.00077 * 302.78321 * 19 18 17 21 21 C 1.46904 * 110.99905 * 66.73426 * 19 18 17 22 22 H 1.08999 * 109.46968 * 55.00242 * 21 19 18 23 23 C 1.53000 * 109.47208 * 295.00127 * 21 19 18 24 24 C 1.50700 * 109.47232 * 175.00231 * 21 19 18 25 25 H 1.08001 * 119.99982 * 359.97438 * 24 21 19 26 26 C 1.37870 * 120.00240 * 179.97438 * 24 21 19 27 27 N 1.31516 * 120.00075 * 0.02562 * 26 24 21 28 28 Si 1.86807 * 120.00175 * 179.97438 * 26 24 21 29 29 H 1.48500 * 109.46891 * 0.02562 * 28 26 24 30 30 H 1.48504 * 109.46820 * 120.00160 * 28 26 24 31 31 H 1.48505 * 109.47260 * 240.00140 * 28 26 24 32 32 H 1.08003 * 119.99589 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.00226 * 0.02562 * 1 2 3 34 34 H 1.09002 * 109.46647 * 269.99831 * 3 2 1 35 35 H 1.08995 * 109.47010 * 29.99691 * 3 2 1 36 36 H 1.08994 * 109.47068 * 150.00035 * 3 2 1 37 37 H 1.08996 * 109.47487 * 334.99907 * 4 2 1 38 38 H 1.09010 * 109.47104 * 214.99767 * 4 2 1 39 39 H 1.08997 * 109.35672 * 311.08406 * 9 7 6 40 40 H 1.09001 * 109.36114 * 70.66992 * 9 7 6 41 41 H 1.08000 * 117.96012 * 197.15121 * 10 9 7 42 42 H 1.07999 * 117.96595 * 179.51116 * 11 10 9 43 43 H 0.96702 * 114.00005 * 59.38212 * 14 12 11 44 44 H 1.08998 * 109.64624 * 190.87924 * 15 12 11 45 45 H 1.08999 * 109.64499 * 70.24537 * 15 12 11 46 46 H 1.08995 * 109.46981 * 177.86973 * 20 19 18 47 47 H 1.09001 * 109.46998 * 297.86872 * 20 19 18 48 48 H 1.09000 * 109.46769 * 57.87080 * 20 19 18 49 49 H 1.08999 * 109.47250 * 299.99942 * 23 21 19 50 50 H 1.09004 * 109.47119 * 59.99923 * 23 21 19 51 51 H 1.09003 * 109.46960 * 179.97438 * 23 21 19 52 52 H 0.97004 * 119.99969 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4120 -1.6683 -1.3752 6 6 1.6356 -2.3501 -2.2708 7 6 0.2439 -2.8750 -2.0285 8 1 -0.0654 -2.6370 -1.0108 9 6 0.2227 -4.3911 -2.2357 10 6 -1.1925 -4.8897 -2.2596 11 6 -2.2257 -4.1315 -2.4419 12 6 -2.1534 -2.6464 -2.6450 13 1 -2.4404 -2.1412 -1.7228 14 8 -3.0514 -2.2696 -3.6908 15 6 -0.7296 -2.2352 -3.0264 16 7 2.3218 -2.4612 -3.3729 17 7 3.4678 -1.8953 -3.2373 18 6 3.5789 -1.3972 -2.0285 19 7 4.6723 -0.7187 -1.5143 20 6 5.8876 -1.5400 -1.5960 21 6 4.8605 0.5692 -2.1955 22 1 3.9399 1.1497 -2.1358 23 6 5.2140 0.3229 -3.6635 24 6 5.9783 1.3305 -1.5306 25 1 6.4968 0.9007 -0.6862 26 6 6.3392 2.5755 -2.0002 27 7 5.7076 3.0990 -3.0281 28 14 7.7243 3.5194 -1.1755 29 1 8.2680 2.7178 -0.0499 30 1 8.8023 3.7799 -2.1632 31 1 7.2041 4.8107 -0.6584 32 1 -0.5399 -0.9354 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 2.2451 1.6198 -1.0277 35 1 1.4744 2.0647 0.5138 36 1 3.0159 1.1749 0.5138 37 1 1.4387 -2.0852 0.4352 38 1 2.9743 -1.1985 0.5900 39 1 0.7071 -4.6332 -3.1817 40 1 0.7625 -4.8747 -1.4216 41 1 -1.3594 -5.9469 -2.1153 42 1 -3.2004 -4.5966 -2.4487 43 1 -3.9747 -2.4993 -3.5181 44 1 -0.6376 -1.1500 -2.9835 45 1 -0.5045 -2.5855 -4.0337 46 1 6.7373 -0.9697 -1.2208 47 1 5.7593 -2.4395 -0.9940 48 1 6.0677 -1.8200 -2.6339 49 1 6.1347 -0.2576 -3.7232 50 1 4.4055 -0.2278 -4.1445 51 1 5.3532 1.2785 -4.1690 52 1 5.9612 3.9752 -3.3582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524029045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:02 Heat of formation + Delta-G solvation = 76.164443 kcal Electronic energy + Delta-G solvation = -32464.860651 eV Core-core repulsion = 28467.035271 eV Total energy + Delta-G solvation = -3997.825380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57626 -39.24161 -37.21743 -36.70158 -35.91485 -33.18515 -32.89300 -32.02564 -29.83631 -28.96059 -28.09149 -27.30749 -26.73181 -25.21213 -25.17927 -23.71816 -22.87177 -21.56783 -20.49241 -19.63927 -18.55027 -18.15195 -17.52773 -16.80132 -16.41890 -16.14334 -15.82197 -15.37662 -14.89314 -14.64717 -14.39271 -14.35091 -14.04347 -13.64354 -13.48479 -13.30503 -13.14656 -12.89218 -12.73065 -12.42513 -12.31496 -11.93608 -11.72823 -11.55910 -11.44417 -11.33838 -11.27121 -11.21446 -11.16054 -10.94577 -10.88010 -10.75187 -10.51886 -10.15507 -10.14797 -10.07799 -9.85993 -9.64879 -9.33261 -9.20855 -8.84069 -8.46418 -8.39880 -7.70844 -6.07736 -4.13903 1.86276 1.93531 2.23584 2.90602 3.25413 3.32391 3.34422 3.37457 4.02833 4.26254 4.33582 4.46073 4.61500 4.62486 4.71173 4.72690 4.87729 4.97088 4.99111 5.11689 5.20249 5.24364 5.28599 5.44388 5.48367 5.64705 5.71303 5.79571 5.81285 5.90692 5.93361 6.01319 6.08751 6.10732 6.22336 6.29337 6.36047 6.39889 6.48176 6.56551 6.58189 6.64072 6.84751 6.88379 7.04371 7.10912 7.21072 7.41860 7.54748 7.66778 7.75855 7.93813 8.26839 8.47725 8.89656 9.27789 9.50958 10.98743 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.003162 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.009179 B = 8852.553709 C = 9285.779720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 C -0.117 4.117 4 C 0.147 3.853 5 N -0.463 5.463 6 C 0.162 3.838 7 C 0.016 3.984 8 H 0.084 0.916 9 C -0.087 4.087 10 C -0.126 4.126 11 C -0.199 4.199 12 C 0.139 3.861 13 H 0.063 0.937 14 O -0.559 6.559 15 C -0.100 4.100 16 N -0.286 5.286 17 N -0.313 5.313 18 C 0.380 3.620 19 N -0.469 5.469 20 C 0.045 3.955 21 C 0.227 3.773 22 H 0.039 0.961 23 C -0.176 4.176 24 C -0.506 4.506 25 H 0.065 0.935 26 C 0.063 3.937 27 N -0.887 5.887 28 Si 0.897 3.103 29 H -0.272 1.272 30 H -0.284 1.284 31 H -0.284 1.284 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.376 0.624 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.040 0.960 49 H 0.030 0.970 50 H 0.036 0.964 51 H 0.085 0.915 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.628 -12.267 7.530 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.132 4.132 3 C -0.174 4.174 4 C 0.024 3.976 5 N -0.155 5.155 6 C -0.106 4.106 7 C -0.005 4.005 8 H 0.103 0.897 9 C -0.125 4.125 10 C -0.144 4.144 11 C -0.218 4.218 12 C 0.081 3.919 13 H 0.081 0.919 14 O -0.364 6.364 15 C -0.138 4.138 16 N -0.126 5.126 17 N -0.156 5.156 18 C 0.024 3.976 19 N -0.196 5.196 20 C -0.103 4.103 21 C 0.122 3.878 22 H 0.057 0.943 23 C -0.235 4.235 24 C -0.545 4.545 25 H 0.083 0.917 26 C -0.139 4.139 27 N -0.526 5.526 28 Si 0.725 3.275 29 H -0.197 1.197 30 H -0.211 1.211 31 H -0.211 1.211 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.223 0.777 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.055 0.945 51 H 0.103 0.897 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.755 -12.145 6.247 20.106 hybrid contribution -0.004 0.611 1.242 1.384 sum -14.759 -11.535 7.489 20.173 Atomic orbital electron populations 1.23760 0.95033 1.01920 1.01371 1.22015 0.95387 0.96039 0.99738 1.20883 1.00294 0.92723 1.03488 1.20814 1.01760 0.94592 0.80406 1.46369 1.13631 1.42613 1.12918 1.24193 0.96606 1.01566 0.88188 1.19389 0.86152 0.94952 1.00015 0.89745 1.20565 0.94687 0.93253 1.03967 1.22083 0.94129 0.99529 0.98705 1.22780 0.99044 0.96643 1.03292 1.20556 0.90585 0.90756 0.90024 0.91940 1.86602 1.20663 1.84043 1.45122 1.21501 0.90578 1.01331 1.00402 1.73914 1.00641 1.18251 1.19797 1.74784 1.12125 1.14655 1.14018 1.22920 0.88696 0.98470 0.87521 1.59417 1.00016 1.05072 1.55049 1.22243 0.91943 0.95625 1.00456 1.19401 0.97680 0.81088 0.89612 0.94280 1.22480 0.98952 1.02312 0.99768 1.21031 1.16931 1.01439 1.15071 0.91654 1.24892 0.96697 0.97350 0.94970 1.69923 1.41050 1.17165 1.24414 0.86452 0.81893 0.79765 0.79353 1.19692 1.21062 1.21064 0.88761 0.87822 0.90635 0.92215 0.90404 0.89302 0.87120 0.88747 0.90618 0.87325 0.87487 0.77704 0.90646 0.89445 0.89213 0.93910 0.94151 0.95088 0.94472 0.89656 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 13.88 29.01 0.40 -1.61 16 2 C -0.13 -1.74 5.64 -101.07 -0.57 -2.30 16 3 C -0.12 -1.81 10.02 36.01 0.36 -1.45 16 4 C 0.15 1.94 5.97 -5.20 -0.03 1.91 16 5 N -0.46 -7.72 2.79 -115.37 -0.32 -8.04 16 6 C 0.16 2.62 6.59 -154.01 -1.01 1.61 16 7 C 0.02 0.19 2.62 -91.55 -0.24 -0.05 16 8 H 0.08 0.84 5.66 -51.93 -0.29 0.55 16 9 C -0.09 -0.90 5.42 -28.17 -0.15 -1.06 16 10 C -0.13 -1.09 9.80 -35.90 -0.35 -1.44 16 11 C -0.20 -1.66 9.37 -35.90 -0.34 -2.00 16 12 C 0.14 1.34 3.71 -28.17 -0.10 1.23 16 13 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 14 O -0.56 -5.66 13.29 -35.23 -0.47 -6.13 16 15 C -0.10 -1.23 4.93 -26.51 -0.13 -1.37 16 16 N -0.29 -5.67 12.10 32.99 0.40 -5.27 16 17 N -0.31 -6.88 9.67 30.31 0.29 -6.58 16 18 C 0.38 7.72 6.25 -318.88 -1.99 5.72 16 19 N -0.47 -9.88 4.76 -176.08 -0.84 -10.72 16 20 C 0.04 0.88 8.70 60.07 0.52 1.40 16 21 C 0.23 5.55 2.32 -68.86 -0.16 5.39 16 22 H 0.04 1.07 6.90 -51.93 -0.36 0.71 16 23 C -0.18 -4.48 8.19 37.16 0.30 -4.17 16 24 C -0.51 -13.03 7.85 -34.44 -0.27 -13.30 16 25 H 0.07 1.65 6.78 -52.49 -0.36 1.30 16 26 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 27 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 28 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 32 H 0.09 0.86 6.62 -52.48 -0.35 0.52 16 33 H 0.10 1.08 8.04 -52.49 -0.42 0.66 16 34 H 0.08 1.43 6.93 -51.93 -0.36 1.07 16 35 H 0.06 0.79 8.06 -51.93 -0.42 0.38 16 36 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.09 0.89 7.26 -51.93 -0.38 0.52 16 38 H 0.11 1.50 8.09 -51.92 -0.42 1.08 16 39 H 0.09 1.14 8.03 -51.93 -0.42 0.73 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.38 1.99 9.06 45.56 0.41 2.40 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 46 H 0.09 1.78 6.36 -51.93 -0.33 1.45 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.83 6.49 -51.93 -0.34 0.49 16 49 H 0.03 0.76 6.52 -51.93 -0.34 0.42 16 50 H 0.04 0.95 5.80 -51.93 -0.30 0.64 16 51 H 0.08 2.37 6.07 -51.93 -0.32 2.06 16 52 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -31.29 407.25 -10.54 -41.84 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.49 Total: 7.22 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.86 Total: -9.92 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.16 Total: -54.66 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.47 Total: -6.13 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.29 -10.54 -41.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524029045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.000 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds