Wall clock time and date at job start Wed Apr 1 2020 05:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99672 * 2 1 4 4 C 1.50691 * 119.99992 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47231 * 95.00236 * 4 2 1 6 6 C 1.36741 * 127.13555 * 274.09008 * 5 4 2 7 7 C 1.50698 * 126.34796 * 0.05875 * 6 5 4 8 8 H 1.09001 * 109.64102 * 359.57119 * 7 6 5 9 9 C 1.53031 * 109.64041 * 238.94586 * 7 6 5 10 10 C 1.50069 * 110.14512 * 190.88028 * 9 7 6 11 11 C 1.29441 * 124.07900 * 17.12192 * 10 9 7 12 12 C 1.50070 * 124.07357 * 359.53893 * 11 10 9 13 13 H 1.08997 * 109.36003 * 256.92018 * 12 11 10 14 14 O 1.42905 * 109.24725 * 137.26184 * 12 11 10 15 15 C 1.53025 * 110.14970 * 17.12786 * 12 11 10 16 16 N 1.30298 * 107.30567 * 180.02562 * 6 5 4 17 17 N 1.28523 * 110.05150 * 359.72924 * 16 6 5 18 18 C 1.31217 * 109.86224 * 0.45276 * 17 16 6 19 19 N 1.38577 * 126.47509 * 179.82315 * 18 17 16 20 20 C 1.46904 * 111.00077 * 302.78321 * 19 18 17 21 21 C 1.46904 * 110.99905 * 66.73426 * 19 18 17 22 22 H 1.08999 * 109.46968 * 55.00242 * 21 19 18 23 23 C 1.53000 * 109.47208 * 295.00127 * 21 19 18 24 24 C 1.50700 * 109.47232 * 175.00231 * 21 19 18 25 25 H 1.08001 * 119.99982 * 359.97438 * 24 21 19 26 26 C 1.37870 * 120.00240 * 179.97438 * 24 21 19 27 27 N 1.31516 * 120.00075 * 0.02562 * 26 24 21 28 28 Si 1.86807 * 120.00175 * 179.97438 * 26 24 21 29 29 H 1.48500 * 109.46891 * 0.02562 * 28 26 24 30 30 H 1.48504 * 109.46820 * 120.00160 * 28 26 24 31 31 H 1.48505 * 109.47260 * 240.00140 * 28 26 24 32 32 H 1.08003 * 119.99589 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.00226 * 0.02562 * 1 2 3 34 34 H 1.09002 * 109.46647 * 269.99831 * 3 2 1 35 35 H 1.08995 * 109.47010 * 29.99691 * 3 2 1 36 36 H 1.08994 * 109.47068 * 150.00035 * 3 2 1 37 37 H 1.08996 * 109.47487 * 334.99907 * 4 2 1 38 38 H 1.09010 * 109.47104 * 214.99767 * 4 2 1 39 39 H 1.08997 * 109.35672 * 311.08406 * 9 7 6 40 40 H 1.09001 * 109.36114 * 70.66992 * 9 7 6 41 41 H 1.08000 * 117.96012 * 197.15121 * 10 9 7 42 42 H 1.07999 * 117.96595 * 179.51116 * 11 10 9 43 43 H 0.96702 * 114.00005 * 59.38212 * 14 12 11 44 44 H 1.08998 * 109.64624 * 190.87924 * 15 12 11 45 45 H 1.08999 * 109.64499 * 70.24537 * 15 12 11 46 46 H 1.08995 * 109.46981 * 177.86973 * 20 19 18 47 47 H 1.09001 * 109.46998 * 297.86872 * 20 19 18 48 48 H 1.09000 * 109.46769 * 57.87080 * 20 19 18 49 49 H 1.08999 * 109.47250 * 299.99942 * 23 21 19 50 50 H 1.09004 * 109.47119 * 59.99923 * 23 21 19 51 51 H 1.09003 * 109.46960 * 179.97438 * 23 21 19 52 52 H 0.97004 * 119.99969 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4120 -1.6683 -1.3752 6 6 1.6356 -2.3501 -2.2708 7 6 0.2439 -2.8750 -2.0285 8 1 -0.0654 -2.6370 -1.0108 9 6 0.2227 -4.3911 -2.2357 10 6 -1.1925 -4.8897 -2.2596 11 6 -2.2257 -4.1315 -2.4419 12 6 -2.1534 -2.6464 -2.6450 13 1 -2.4404 -2.1412 -1.7228 14 8 -3.0514 -2.2696 -3.6908 15 6 -0.7296 -2.2352 -3.0264 16 7 2.3218 -2.4612 -3.3729 17 7 3.4678 -1.8953 -3.2373 18 6 3.5789 -1.3972 -2.0285 19 7 4.6723 -0.7187 -1.5143 20 6 5.8876 -1.5400 -1.5960 21 6 4.8605 0.5692 -2.1955 22 1 3.9399 1.1497 -2.1358 23 6 5.2140 0.3229 -3.6635 24 6 5.9783 1.3305 -1.5306 25 1 6.4968 0.9007 -0.6862 26 6 6.3392 2.5755 -2.0002 27 7 5.7076 3.0990 -3.0281 28 14 7.7243 3.5194 -1.1755 29 1 8.2680 2.7178 -0.0499 30 1 8.8023 3.7799 -2.1632 31 1 7.2041 4.8107 -0.6584 32 1 -0.5399 -0.9354 0.0004 33 1 -0.5400 0.9353 -0.0004 34 1 2.2451 1.6198 -1.0277 35 1 1.4744 2.0647 0.5138 36 1 3.0159 1.1749 0.5138 37 1 1.4387 -2.0852 0.4352 38 1 2.9743 -1.1985 0.5900 39 1 0.7071 -4.6332 -3.1817 40 1 0.7625 -4.8747 -1.4216 41 1 -1.3594 -5.9469 -2.1153 42 1 -3.2004 -4.5966 -2.4487 43 1 -3.9747 -2.4993 -3.5181 44 1 -0.6376 -1.1500 -2.9835 45 1 -0.5045 -2.5855 -4.0337 46 1 6.7373 -0.9697 -1.2208 47 1 5.7593 -2.4395 -0.9940 48 1 6.0677 -1.8200 -2.6339 49 1 6.1347 -0.2576 -3.7232 50 1 4.4055 -0.2278 -4.1445 51 1 5.3532 1.2785 -4.1690 52 1 5.9612 3.9752 -3.3582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524029045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:58 Heat of formation + Delta-G solvation = 57.729448 kcal Electronic energy + Delta-G solvation = -32465.660052 eV Core-core repulsion = 28467.035271 eV Total energy + Delta-G solvation = -3998.624781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -44.00575 -40.08099 -38.92555 -37.82579 -36.73155 -34.87687 -34.36952 -33.04605 -30.97229 -30.57148 -29.48946 -28.53142 -27.82340 -27.24890 -26.83951 -24.74999 -23.70076 -23.28794 -21.70710 -21.18764 -19.68232 -18.99969 -18.44442 -18.34786 -17.76656 -17.43783 -17.12931 -16.82516 -16.44668 -15.89662 -15.63037 -15.28852 -15.21761 -15.03958 -14.77099 -14.51523 -14.16145 -14.11877 -14.06414 -13.84301 -13.43679 -13.26496 -13.08408 -13.00364 -12.93189 -12.81650 -12.71809 -12.58435 -12.48810 -12.35088 -12.20336 -12.15873 -12.05364 -11.97944 -11.74909 -11.41764 -11.01884 -10.85923 -10.80546 -10.51872 -10.21507 -9.99955 -9.90382 -9.45046 -8.12678 -6.25581 0.67448 0.96414 1.31504 1.43125 1.45260 1.56473 1.67464 1.84756 2.42443 3.04248 3.17362 3.21809 3.36473 3.58894 3.64377 3.72441 3.80680 4.04835 4.11793 4.17872 4.25856 4.27809 4.32863 4.37170 4.44392 4.51602 4.62482 4.64211 4.69068 4.72242 4.76848 4.84737 4.87584 4.91708 4.98869 5.01479 5.03348 5.12342 5.13430 5.16702 5.17442 5.29527 5.44319 5.55424 5.63227 5.65365 5.67568 5.78429 5.88595 5.94503 6.04032 6.22558 6.66838 6.84494 6.95580 7.43271 7.80122 8.94177 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.003162 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.009179 B = 8852.553709 C = 9285.779720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.163 4.163 3 C -0.108 4.108 4 C 0.142 3.858 5 N -0.457 5.457 6 C 0.186 3.814 7 C 0.020 3.980 8 H 0.116 0.884 9 C -0.084 4.084 10 C -0.131 4.131 11 C -0.195 4.195 12 C 0.143 3.857 13 H 0.088 0.912 14 O -0.582 6.582 15 C -0.099 4.099 16 N -0.325 5.325 17 N -0.350 5.350 18 C 0.358 3.642 19 N -0.462 5.462 20 C 0.049 3.951 21 C 0.242 3.758 22 H 0.005 0.995 23 C -0.159 4.159 24 C -0.511 4.511 25 H 0.071 0.929 26 C 0.015 3.985 27 N -0.921 5.921 28 Si 0.964 3.036 29 H -0.260 1.260 30 H -0.285 1.285 31 H -0.282 1.282 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.398 0.602 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.023 0.977 49 H 0.030 0.970 50 H 0.029 0.971 51 H 0.058 0.942 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.059 -13.965 10.358 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C -0.165 4.165 4 C 0.021 3.979 5 N -0.149 5.149 6 C -0.083 4.083 7 C -0.001 4.001 8 H 0.134 0.866 9 C -0.122 4.122 10 C -0.149 4.149 11 C -0.213 4.213 12 C 0.084 3.916 13 H 0.105 0.895 14 O -0.391 6.391 15 C -0.138 4.138 16 N -0.165 5.165 17 N -0.193 5.193 18 C 0.001 3.999 19 N -0.187 5.187 20 C -0.098 4.098 21 C 0.136 3.864 22 H 0.023 0.977 23 C -0.218 4.218 24 C -0.550 4.550 25 H 0.089 0.911 26 C -0.184 4.184 27 N -0.560 5.560 28 Si 0.789 3.211 29 H -0.184 1.184 30 H -0.212 1.212 31 H -0.208 1.208 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.248 0.752 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.042 0.958 49 H 0.049 0.951 50 H 0.048 0.952 51 H 0.077 0.923 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.212 -13.868 9.102 23.905 hybrid contribution 0.578 1.124 0.316 1.303 sum -16.634 -12.745 9.419 22.974 Atomic orbital electron populations 1.24093 0.94045 1.03831 0.96633 1.21825 0.96157 0.94757 1.03623 1.20712 1.00329 0.95076 1.00351 1.21150 1.02437 0.95970 0.78322 1.46583 1.12257 1.41806 1.14206 1.25078 0.97445 0.98991 0.86778 1.19654 0.83063 0.95930 1.01414 0.86587 1.20519 0.96444 0.91937 1.03297 1.22112 0.92710 1.00707 0.99359 1.22905 1.00257 0.95726 1.02393 1.20515 0.88472 0.92031 0.90566 0.89453 1.86555 1.22414 1.84400 1.45761 1.21428 0.93283 0.99977 0.99114 1.73831 1.00717 1.20019 1.21926 1.74639 1.13655 1.15670 1.15302 1.22826 0.89660 0.99486 0.87967 1.59290 1.00980 1.04216 1.54223 1.22237 0.91288 0.96341 0.99940 1.18999 0.95757 0.82624 0.89055 0.97690 1.22293 0.98567 1.00472 1.00503 1.21272 1.16977 1.01691 1.15041 0.91133 1.25706 0.98976 0.98317 0.95449 1.70072 1.42621 1.17467 1.25867 0.85419 0.78767 0.78370 0.78541 1.18362 1.21157 1.20838 0.85663 0.86979 0.95391 0.90398 0.92295 0.84913 0.87818 0.91252 0.89224 0.85146 0.84845 0.75198 0.92654 0.92442 0.89536 0.91152 0.95779 0.95114 0.95215 0.92331 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 13.88 67.77 0.94 -1.80 16 2 C -0.16 -4.07 5.64 -16.50 -0.09 -4.16 16 3 C -0.11 -3.44 10.02 71.24 0.71 -2.72 16 4 C 0.14 3.48 5.97 85.63 0.51 3.99 16 5 N -0.46 -15.08 2.79 -518.93 -1.45 -16.53 16 6 C 0.19 5.93 6.59 137.64 0.91 6.84 16 7 C 0.02 0.43 2.62 -11.40 -0.03 0.40 16 8 H 0.12 1.75 5.66 -2.39 -0.01 1.73 16 9 C -0.08 -1.55 5.42 29.66 0.16 -1.39 16 10 C -0.13 -1.76 9.80 27.04 0.27 -1.50 16 11 C -0.19 -2.43 9.37 27.04 0.25 -2.18 16 12 C 0.14 2.25 3.71 29.66 0.11 2.36 16 13 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 14 O -0.58 -10.30 13.29 -148.98 -1.98 -12.28 16 15 C -0.10 -2.33 4.93 30.73 0.15 -2.18 16 16 N -0.33 -13.35 12.10 -49.54 -0.60 -13.95 16 17 N -0.35 -16.07 9.67 -58.01 -0.56 -16.63 16 18 C 0.36 15.00 6.25 260.11 1.63 16.63 16 19 N -0.46 -20.10 4.76 -710.99 -3.39 -23.49 16 20 C 0.05 1.97 8.70 127.69 1.11 3.08 16 21 C 0.24 12.46 2.32 44.17 0.10 12.56 16 22 H 0.01 0.31 6.90 -2.39 -0.02 0.29 16 23 C -0.16 -8.59 8.19 71.98 0.59 -8.00 16 24 C -0.51 -27.10 7.85 25.60 0.20 -26.90 16 25 H 0.07 3.60 6.78 -2.91 -0.02 3.59 16 26 C 0.01 0.79 5.30 84.65 0.45 1.23 16 27 N -0.92 -53.31 11.32 21.44 0.24 -53.07 16 28 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 29 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 30 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 31 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 32 H 0.13 1.55 6.62 -2.91 -0.02 1.53 16 33 H 0.11 1.93 8.04 -2.91 -0.02 1.91 16 34 H 0.03 1.13 6.93 -2.39 -0.02 1.11 16 35 H 0.08 2.07 8.06 -2.39 -0.02 2.06 16 36 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 37 H 0.13 2.06 7.26 -2.39 -0.02 2.04 16 38 H 0.10 2.71 8.09 -2.38 -0.02 2.69 16 39 H 0.07 1.65 8.03 -2.39 -0.02 1.63 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 43 H 0.40 2.88 9.06 -74.06 -0.67 2.21 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 46 H 0.09 3.46 6.36 -2.39 -0.02 3.44 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.02 1.02 6.49 -2.39 -0.02 1.00 16 49 H 0.03 1.59 6.52 -2.39 -0.02 1.58 16 50 H 0.03 1.61 5.80 -2.39 -0.01 1.60 16 51 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 52 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -73.70 407.25 2.52 -71.18 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.26 Total: 23.79 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 7.97 Total: -3.73 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.75 Total: -123.68 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.98 Total: -12.28 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.70 2.52 -71.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524029045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.912 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds