Wall clock time and date at job start Wed Apr 1 2020 04:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00192 * 2 1 4 4 C 1.50704 * 120.00040 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.46523 * 94.99955 * 4 2 1 6 6 C 1.36739 * 127.13973 * 270.00090 * 5 4 2 7 7 C 1.50706 * 126.34935 * 359.97438 * 6 5 4 8 8 H 1.09002 * 109.46563 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47006 * 119.99877 * 7 6 5 10 10 C 1.53001 * 109.47122 * 240.00576 * 7 6 5 11 11 C 1.50703 * 109.46529 * 174.99902 * 10 7 6 12 12 H 1.08002 * 120.00427 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99464 * 179.97438 * 11 10 7 14 14 N 1.31511 * 120.00260 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46869 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46917 * 120.00256 * 15 13 11 18 18 H 1.48499 * 109.47539 * 240.00551 * 15 13 11 19 19 N 1.30294 * 107.30776 * 180.02562 * 6 5 4 20 20 N 1.28533 * 110.05305 * 359.72321 * 19 6 5 21 21 C 1.31214 * 109.85779 * 0.45720 * 20 19 6 22 22 N 1.38571 * 126.47358 * 179.81958 * 21 20 19 23 23 C 1.48511 * 110.99978 * 359.68972 * 22 21 20 24 24 C 1.54262 * 104.84249 * 200.72465 * 23 22 21 25 25 H 1.09003 * 112.65724 * 260.20441 * 24 23 22 26 26 C 1.54395 * 108.77338 * 134.52787 * 24 23 22 27 27 O 1.44382 * 104.91687 * 224.68117 * 26 24 23 28 28 C 1.44381 * 105.26096 * 40.75989 * 27 26 24 29 29 C 1.54397 * 104.91459 * 319.24062 * 28 27 26 30 30 H 1.08996 * 112.68225 * 261.64939 * 29 28 27 31 31 C 1.48613 * 111.10634 * 244.29722 * 22 21 20 32 32 H 1.07995 * 120.00087 * 359.97438 * 1 2 3 33 33 H 1.08002 * 119.99806 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47074 * 269.99740 * 3 2 1 35 35 H 1.09001 * 109.47522 * 29.99685 * 3 2 1 36 36 H 1.08992 * 109.47633 * 150.00112 * 3 2 1 37 37 H 1.09002 * 109.47166 * 335.00604 * 4 2 1 38 38 H 1.08997 * 109.47289 * 214.99870 * 4 2 1 39 39 H 1.09002 * 109.47095 * 60.00772 * 9 7 6 40 40 H 1.09002 * 109.47195 * 180.02562 * 9 7 6 41 41 H 1.09000 * 109.47148 * 300.00321 * 9 7 6 42 42 H 1.08996 * 109.46743 * 294.99323 * 10 7 6 43 43 H 1.09000 * 109.47437 * 54.99717 * 10 7 6 44 44 H 0.96997 * 120.00377 * 179.97438 * 14 13 11 45 45 H 1.09002 * 110.38539 * 81.85053 * 23 22 21 46 46 H 1.08997 * 110.38134 * 319.59527 * 23 22 21 47 47 H 1.08992 * 110.34893 * 343.54241 * 26 24 23 48 48 H 1.08999 * 110.35025 * 105.71351 * 26 24 23 49 49 H 1.08997 * 110.34908 * 78.09470 * 28 27 26 50 50 H 1.08993 * 110.35382 * 200.38231 * 28 27 26 51 51 H 1.08996 * 110.28240 * 40.38718 * 31 22 21 52 52 H 1.09000 * 110.50453 * 278.11409 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6683 -1.3753 6 6 1.6678 -2.4160 -2.2454 7 6 0.3196 -3.0300 -1.9685 8 1 0.0123 -2.7881 -0.9511 9 6 -0.7070 -2.4732 -2.9569 10 6 0.4088 -4.5492 -2.1273 11 6 -0.9047 -5.1734 -1.7319 12 1 -1.7212 -4.5491 -1.4001 13 6 -1.0639 -6.5415 -1.7936 14 7 -0.0699 -7.3017 -2.1980 15 14 -2.6917 -7.3155 -1.3029 16 1 -3.6408 -6.2511 -0.8886 17 1 -3.2551 -8.0581 -2.4588 18 1 -2.4734 -8.2523 -0.1715 19 7 2.3408 -2.5001 -3.3578 20 7 3.4484 -1.8566 -3.2526 21 6 3.5465 -1.3312 -2.0542 22 7 4.6005 -0.5722 -1.5713 23 6 5.6594 -0.4159 -2.6008 24 6 6.9311 -0.0509 -1.8075 25 1 7.1424 1.0184 -1.8217 26 6 8.1080 -0.8974 -2.3385 27 8 8.7902 -1.3683 -1.1563 28 6 7.7421 -1.7256 -0.2297 29 6 6.6832 -0.6120 -0.3788 30 1 6.7639 0.1511 0.3952 31 6 5.2857 -1.2618 -0.4472 32 1 -0.5400 0.9353 0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.2453 1.6197 -1.0277 35 1 1.4745 2.0648 0.5138 36 1 3.0159 1.1748 0.5138 37 1 1.4386 -2.0853 0.4351 38 1 2.9742 -1.1986 0.5899 39 1 -0.3998 -2.7148 -3.9745 40 1 -1.6822 -2.9170 -2.7564 41 1 -0.7704 -1.3910 -2.8438 42 1 0.6290 -4.7935 -3.1664 43 1 1.2020 -4.9355 -1.4872 44 1 -0.1818 -8.2642 -2.2411 45 1 5.4007 0.3854 -3.2930 46 1 5.8045 -1.3513 -3.1412 47 1 7.7363 -1.7394 -2.9223 48 1 8.7747 -0.2826 -2.9432 49 1 7.3151 -2.6927 -0.4951 50 1 8.1282 -1.7475 0.7893 51 1 5.3726 -2.3283 -0.6550 52 1 4.7458 -1.1002 0.4858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524308900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:01 Heat of formation + Delta-G solvation = 59.976174 kcal Electronic energy + Delta-G solvation = -31975.667150 eV Core-core repulsion = 27977.139794 eV Total energy + Delta-G solvation = -3998.527356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.71860 -40.70527 -37.37855 -36.88011 -35.19000 -33.32895 -32.54332 -31.83950 -31.10093 -28.36398 -27.59653 -27.11627 -26.81806 -26.52381 -24.27742 -23.98344 -22.57429 -21.95378 -20.79321 -20.22975 -19.25229 -18.58967 -17.33934 -17.04979 -16.52900 -16.15556 -15.89875 -15.86166 -15.28183 -15.24662 -14.60640 -14.43547 -14.36471 -14.07149 -13.74000 -13.36918 -13.19165 -13.17322 -12.78519 -12.55334 -12.41049 -12.14590 -12.03355 -11.81686 -11.60537 -11.55184 -11.40308 -11.33948 -11.22754 -11.17868 -11.01287 -10.94690 -10.73596 -10.50946 -10.29535 -10.15551 -10.08705 -9.86744 -9.61959 -9.36318 -9.30884 -9.12430 -8.39667 -8.02948 -6.03116 -4.06850 1.77236 2.07766 2.69038 3.25212 3.28367 3.36538 3.38940 3.54287 3.75434 3.89557 4.21255 4.41195 4.41449 4.51350 4.55281 4.62223 4.77013 4.79722 4.86212 4.94933 4.97869 5.13702 5.22209 5.25573 5.32455 5.35475 5.37175 5.40651 5.42493 5.45184 5.56086 5.58923 5.65307 5.66557 5.75212 5.83846 5.85613 6.00384 6.04504 6.15573 6.24124 6.37443 6.40239 6.42387 6.63128 6.68475 6.78022 6.88287 7.03193 7.37250 7.58982 7.75973 7.96016 8.32021 8.98931 9.20320 9.56984 11.07942 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012632 B = 0.003038 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.004474 B = 9212.957867 C =10304.823946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.154 4.154 3 C -0.107 4.107 4 C 0.144 3.856 5 N -0.474 5.474 6 C 0.219 3.781 7 C 0.000 4.000 8 H 0.070 0.930 9 C -0.125 4.125 10 C 0.038 3.962 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.285 1.285 19 N -0.284 5.284 20 N -0.320 5.320 21 C 0.322 3.678 22 N -0.423 5.423 23 C 0.057 3.943 24 C -0.122 4.122 25 H 0.105 0.895 26 C 0.048 3.952 27 O -0.373 6.373 28 C 0.048 3.952 29 C -0.117 4.117 30 H 0.106 0.894 31 C 0.036 3.964 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.261 0.739 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.061 0.939 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.883 18.266 7.231 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.164 4.164 4 C 0.021 3.979 5 N -0.168 5.168 6 C -0.048 4.048 7 C -0.021 4.021 8 H 0.088 0.912 9 C -0.183 4.183 10 C 0.000 4.000 11 C -0.558 4.558 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 N -0.122 5.122 20 N -0.164 5.164 21 C -0.034 4.034 22 N -0.146 5.146 23 C -0.070 4.070 24 C -0.141 4.141 25 H 0.123 0.877 26 C -0.029 4.029 27 O -0.292 6.292 28 C -0.029 4.029 29 C -0.137 4.137 30 H 0.124 0.876 31 C -0.091 4.091 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.031 0.969 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.079 0.921 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.316 18.192 5.960 22.763 hybrid contribution -1.191 -0.823 1.394 2.010 sum 11.126 17.369 7.354 21.898 Atomic orbital electron populations 1.23975 0.95128 1.02810 0.97752 1.21808 0.95580 0.95248 1.02812 1.20731 0.99662 0.93669 1.02299 1.20908 1.01176 0.95719 0.80055 1.46291 1.15432 1.41483 1.13567 1.25595 0.98082 0.94944 0.86172 1.19985 0.83805 0.99210 0.99135 0.91189 1.21666 0.99319 0.97849 0.99496 1.19111 0.97230 0.85071 0.98564 1.21170 0.98169 0.91751 1.44741 0.92291 1.25001 0.96506 0.97435 0.95294 1.69986 1.31162 1.04815 1.46908 0.86560 0.83988 0.79391 0.78200 1.19686 1.20958 1.21098 1.74016 1.00684 1.17400 1.20064 1.74517 1.14839 1.12483 1.14599 1.22583 0.89868 0.99902 0.91090 1.62212 1.05418 1.38878 1.08139 1.23146 0.87622 1.03208 0.93061 1.23369 0.95094 1.01501 0.94184 0.87688 1.23637 0.93597 0.97124 0.88580 1.89123 1.29337 1.84626 1.26065 1.23617 0.87955 0.96501 0.94844 1.23285 0.94034 0.98189 0.98167 0.87619 1.23418 0.93707 0.97164 0.94817 0.87837 0.87508 0.91520 0.92055 0.91791 0.87837 0.88703 0.92098 0.90698 0.94900 0.94970 0.96943 0.92967 0.88896 0.90642 0.91551 0.88632 0.91802 0.88675 0.92090 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 13.89 29.01 0.40 -1.34 16 2 C -0.15 -1.72 5.63 -101.07 -0.57 -2.29 16 3 C -0.11 -1.02 10.03 36.00 0.36 -0.66 16 4 C 0.14 1.78 5.98 -5.19 -0.03 1.75 16 5 N -0.47 -7.65 2.79 -115.37 -0.32 -7.97 16 6 C 0.22 4.33 6.58 -154.01 -1.01 3.32 16 7 C 0.00 -0.01 2.70 -91.77 -0.25 -0.25 16 8 H 0.07 1.29 6.02 -51.93 -0.31 0.98 16 9 C -0.13 -2.37 8.98 37.15 0.33 -2.03 16 10 C 0.04 0.97 4.43 -27.88 -0.12 0.85 16 11 C -0.52 -13.93 8.41 -34.44 -0.29 -14.22 16 12 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 N -0.28 -6.23 12.18 32.99 0.40 -5.83 16 20 N -0.32 -6.30 10.98 30.31 0.33 -5.97 16 21 C 0.32 5.21 7.00 -318.89 -2.23 2.97 16 22 N -0.42 -5.11 5.42 -170.24 -0.92 -6.03 16 23 C 0.06 0.61 5.63 -2.27 -0.01 0.60 16 24 C -0.12 -0.99 4.22 -87.91 -0.37 -1.36 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 26 C 0.05 0.41 7.17 37.89 0.27 0.68 16 27 O -0.37 -3.87 11.65 -35.23 -0.41 -4.28 16 28 C 0.05 0.40 7.17 37.89 0.27 0.68 16 29 C -0.12 -0.92 4.22 -87.91 -0.37 -1.29 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 C 0.04 0.36 5.47 -2.21 -0.01 0.35 16 32 H 0.10 0.97 8.04 -52.49 -0.42 0.55 16 33 H 0.11 1.25 7.07 -52.49 -0.37 0.88 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 36 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.10 1.29 7.07 -51.93 -0.37 0.93 16 38 H 0.09 0.96 5.52 -51.93 -0.29 0.68 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.08 0.96 6.43 -51.93 -0.33 0.62 16 47 H 0.07 0.62 7.13 -51.93 -0.37 0.24 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.58 7.14 -51.93 -0.37 0.21 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 52 H 0.09 0.76 6.12 -51.93 -0.32 0.44 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -33.03 407.50 -11.24 -44.27 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.45 Total: 0.09 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.73 Total: -10.69 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.23 Total: -51.52 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.41 Total: -4.28 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.03 -11.24 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524308900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.248 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds