Wall clock time and date at job start Wed Apr 1 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00100 * 2 1 4 4 C 1.50699 * 120.00385 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46894 * 95.20079 * 4 2 1 6 6 C 1.36738 * 127.14118 * 274.26940 * 5 4 2 7 7 C 1.50699 * 126.34259 * 359.73604 * 6 5 4 8 8 H 1.09001 * 115.56594 * 71.86128 * 7 6 5 9 9 C 1.52431 * 117.52731 * 285.98433 * 7 6 5 10 10 H 1.08996 * 116.66127 * 145.58405 * 9 7 6 11 11 C 1.52535 * 119.22163 * 1.09784 * 9 7 6 12 12 C 1.53116 * 109.62176 * 310.91980 * 11 9 7 13 13 C 1.53326 * 108.39667 * 307.25284 * 12 11 9 14 14 O 1.42723 * 108.80980 * 72.01304 * 13 12 11 15 15 C 1.42636 * 114.99454 * 305.58736 * 14 13 12 16 16 H 1.09002 * 115.42954 * 233.23094 * 15 14 13 17 17 N 1.30286 * 107.30367 * 180.02562 * 6 5 4 18 18 N 1.28521 * 110.05972 * 359.97438 * 17 6 5 19 19 C 1.31224 * 109.85797 * 0.02562 * 18 17 6 20 20 N 1.38578 * 126.47103 * 179.97438 * 19 18 17 21 21 C 1.46899 * 111.00296 * 250.99188 * 20 19 18 22 22 C 1.46897 * 111.00262 * 14.95277 * 20 19 18 23 23 H 1.08999 * 109.47639 * 54.98884 * 22 20 19 24 24 C 1.52999 * 109.46934 * 294.99354 * 22 20 19 25 25 C 1.50703 * 109.47328 * 174.99460 * 22 20 19 26 26 H 1.07999 * 119.99934 * 359.97438 * 25 22 20 27 27 C 1.37882 * 119.99863 * 179.97438 * 25 22 20 28 28 N 1.31510 * 120.00151 * 359.97438 * 27 25 22 29 29 Si 1.86796 * 119.99629 * 179.97438 * 27 25 22 30 30 H 1.48506 * 109.46934 * 90.00285 * 29 27 25 31 31 H 1.48501 * 109.47022 * 209.99843 * 29 27 25 32 32 H 1.48497 * 109.47472 * 330.00191 * 29 27 25 33 33 H 1.07998 * 119.99977 * 175.39257 * 1 2 3 34 34 H 1.07999 * 120.00087 * 355.38916 * 1 2 3 35 35 H 1.08997 * 109.47255 * 270.00228 * 3 2 1 36 36 H 1.09010 * 109.47131 * 29.99765 * 3 2 1 37 37 H 1.08995 * 109.47443 * 150.00036 * 3 2 1 38 38 H 1.09001 * 109.46817 * 335.21104 * 4 2 1 39 39 H 1.08990 * 109.47393 * 215.20692 * 4 2 1 40 40 H 1.09001 * 109.44800 * 190.87255 * 11 9 7 41 41 H 1.09009 * 109.44795 * 70.96640 * 11 9 7 42 42 H 1.09001 * 109.67981 * 187.52632 * 12 11 9 43 43 H 1.09000 * 109.68192 * 66.97575 * 12 11 9 44 44 H 1.08996 * 109.57892 * 312.20807 * 13 12 11 45 45 H 1.09003 * 109.57854 * 191.80645 * 13 12 11 46 46 H 1.08996 * 109.47129 * 63.81915 * 21 20 19 47 47 H 1.09005 * 109.46620 * 183.81592 * 21 20 19 48 48 H 1.08999 * 109.47230 * 303.81015 * 21 20 19 49 49 H 1.08997 * 109.47487 * 180.02562 * 24 22 20 50 50 H 1.09004 * 109.47442 * 300.00159 * 24 22 20 51 51 H 1.09007 * 109.47033 * 59.99946 * 24 22 20 52 52 H 0.97001 * 120.00413 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 7 2.4162 -1.6659 -1.3749 6 6 1.6413 -2.3432 -2.2752 7 6 0.2498 -2.8706 -2.0372 8 1 -0.5352 -2.1167 -1.9775 9 6 0.1064 -4.1094 -1.1606 10 1 -0.7822 -4.1632 -0.5317 11 6 1.3547 -4.7381 -0.5499 12 6 2.4202 -4.9229 -1.6338 13 6 1.7920 -5.6888 -2.8042 14 8 0.8867 -4.8227 -3.4878 15 6 -0.1127 -4.2245 -2.6645 16 1 -1.1401 -4.3594 -3.0027 17 7 2.3314 -2.4533 -3.3748 18 7 3.4804 -1.8956 -3.2319 19 6 3.5861 -1.3960 -2.0231 20 7 4.6796 -0.7219 -1.5031 21 6 5.3714 -1.5382 -0.4966 22 6 5.6007 -0.3102 -2.5707 23 1 5.0587 0.2771 -3.3119 24 6 6.1945 -1.5519 -3.2389 25 6 6.7104 0.5232 -1.9831 26 1 6.7292 0.7270 -0.9227 27 6 7.7016 1.0255 -2.7994 28 7 7.6789 0.7770 -4.0906 29 14 9.0766 2.0591 -2.0712 30 1 10.2002 1.1754 -1.6687 31 1 9.5526 3.0345 -3.0847 32 1 8.5703 2.7890 -0.8812 33 1 -0.5400 -0.9323 -0.0751 34 1 -0.5400 0.9323 0.0752 35 1 2.2451 1.6198 -1.0276 36 1 1.4744 2.0648 0.5138 37 1 3.0159 1.1748 0.5138 38 1 1.4373 -2.0860 0.4318 39 1 2.9723 -1.1996 0.5930 40 1 1.1004 -5.7078 -0.1219 41 1 1.7430 -4.0869 0.2334 42 1 3.2587 -5.4912 -1.2312 43 1 2.7676 -3.9485 -1.9771 44 1 1.2520 -6.5564 -2.4252 45 1 2.5745 -6.0140 -3.4899 46 1 5.7765 -2.4325 -0.9700 47 1 6.1841 -0.9603 -0.0563 48 1 4.6671 -1.8272 0.2835 49 1 6.8783 -1.2464 -4.0308 50 1 6.7366 -2.1393 -2.4978 51 1 5.3918 -2.1547 -3.6639 52 1 8.3760 1.1307 -4.6650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524401638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:12 Heat of formation + Delta-G solvation = 123.425016 kcal Electronic energy + Delta-G solvation = -33482.810934 eV Core-core repulsion = 29487.034927 eV Total energy + Delta-G solvation = -3995.776008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.73821 -40.01260 -37.22252 -36.76452 -34.99428 -33.24204 -32.89708 -32.59852 -29.51267 -28.64881 -27.43672 -27.08391 -26.30023 -25.19942 -25.14194 -23.56262 -23.22163 -21.53112 -20.24385 -19.43534 -19.16623 -18.61203 -17.25808 -16.63758 -16.20601 -15.90839 -15.77591 -15.38426 -14.89354 -14.68703 -14.62294 -14.38468 -14.13761 -13.99557 -13.73531 -13.31906 -13.18533 -13.00481 -12.92625 -12.41831 -12.09827 -11.90735 -11.76537 -11.54345 -11.51379 -11.29364 -11.20470 -11.10979 -10.96836 -10.88829 -10.81514 -10.70865 -10.30715 -10.14030 -10.04245 -9.96157 -9.69046 -9.66582 -9.32056 -9.23509 -8.77984 -8.62411 -8.37712 -7.34196 -6.00929 -4.08262 1.83254 2.30121 2.85970 3.28084 3.29117 3.36229 3.38458 3.50436 3.78210 4.26263 4.32027 4.37145 4.52760 4.58261 4.64992 4.69542 4.73986 4.87155 4.89893 5.08693 5.20990 5.27472 5.30584 5.30963 5.51976 5.57995 5.58951 5.63953 5.66479 5.68977 5.76976 5.79798 5.86833 5.95691 6.02024 6.10095 6.12099 6.23805 6.25621 6.38712 6.44551 6.50676 6.72339 6.87708 7.06200 7.20390 7.25490 7.37630 7.56081 7.71613 7.78133 8.00919 8.34709 8.51888 8.93676 9.47919 9.56394 11.05090 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.003913 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.377038 B = 7153.689373 C = 8283.257518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.132 4.132 3 C -0.115 4.115 4 C 0.147 3.853 5 N -0.477 5.477 6 C 0.191 3.809 7 C -0.086 4.086 8 H 0.126 0.874 9 C -0.162 4.162 10 H 0.117 0.883 11 C -0.089 4.089 12 C -0.181 4.181 13 C 0.070 3.930 14 O -0.324 6.324 15 C 0.062 3.938 16 H 0.136 0.864 17 N -0.262 5.262 18 N -0.315 5.315 19 C 0.380 3.620 20 N -0.454 5.454 21 C 0.037 3.963 22 C 0.232 3.768 23 H 0.047 0.953 24 C -0.179 4.179 25 C -0.512 4.512 26 H 0.062 0.938 27 C 0.064 3.936 28 N -0.884 5.884 29 Si 0.897 3.103 30 H -0.281 1.281 31 H -0.286 1.286 32 H -0.274 1.274 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.036 0.964 47 H 0.092 0.908 48 H 0.041 0.959 49 H 0.087 0.913 50 H 0.019 0.981 51 H 0.054 0.946 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.691 -9.674 11.421 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.133 4.133 3 C -0.171 4.171 4 C 0.024 3.976 5 N -0.173 5.173 6 C -0.075 4.075 7 C -0.107 4.107 8 H 0.144 0.856 9 C -0.181 4.181 10 H 0.135 0.865 11 C -0.126 4.126 12 C -0.219 4.219 13 C -0.007 4.007 14 O -0.241 6.241 15 C 0.002 3.998 16 H 0.153 0.847 17 N -0.101 5.101 18 N -0.159 5.159 19 C 0.025 3.975 20 N -0.178 5.178 21 C -0.111 4.111 22 C 0.127 3.873 23 H 0.065 0.935 24 C -0.239 4.239 25 C -0.551 4.551 26 H 0.080 0.920 27 C -0.139 4.139 28 N -0.522 5.522 29 Si 0.725 3.275 30 H -0.208 1.208 31 H -0.212 1.212 32 H -0.199 1.199 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.055 0.945 47 H 0.110 0.890 48 H 0.060 0.940 49 H 0.105 0.895 50 H 0.038 0.962 51 H 0.072 0.928 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.304 -9.517 9.856 21.297 hybrid contribution 0.766 0.521 1.724 1.957 sum -15.538 -8.997 11.580 21.365 Atomic orbital electron populations 1.23765 0.95040 1.02048 1.00972 1.21961 0.95452 0.95846 1.00013 1.20816 1.00083 0.93127 1.03112 1.20883 1.01137 0.94762 0.80843 1.46231 1.12943 1.45312 1.12800 1.22878 0.95373 1.01581 0.87690 1.20757 0.91200 0.92104 1.06635 0.85625 1.22740 1.00991 1.00397 0.94017 0.86492 1.20975 0.93407 1.00423 0.97775 1.22694 0.98386 1.04164 0.96680 1.22512 0.92308 0.91135 0.94711 1.87933 1.42044 1.62187 1.31984 1.22934 0.93194 0.93898 0.89749 0.84672 1.74175 0.99904 1.16671 1.19398 1.74974 1.11565 1.14652 1.14689 1.23192 0.88429 0.96309 0.89539 1.59361 1.07252 1.33751 1.17478 1.22354 0.98388 0.96828 0.93489 1.19313 0.88440 0.93190 0.86322 0.93511 1.22555 1.01529 0.98120 1.01650 1.21022 1.07593 1.31898 0.94589 0.91954 1.24883 0.97898 0.96291 0.94787 1.69925 1.33975 1.44780 1.03475 0.86520 0.82089 0.80082 0.78809 1.20758 1.21225 1.19905 0.88477 0.87972 0.90831 0.92169 0.91006 0.89189 0.88003 0.90994 0.91569 0.91209 0.88632 0.93469 0.88793 0.94504 0.88977 0.94024 0.89489 0.96214 0.92773 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 13.88 29.02 0.40 -1.38 16 2 C -0.13 -1.57 5.63 -101.07 -0.57 -2.14 16 3 C -0.11 -1.50 10.03 36.01 0.36 -1.13 16 4 C 0.15 1.81 5.99 -5.19 -0.03 1.78 16 5 N -0.48 -7.64 2.59 -115.37 -0.30 -7.94 16 6 C 0.19 3.10 4.36 -154.02 -0.67 2.43 16 7 C -0.09 -1.02 5.88 -91.78 -0.54 -1.56 16 8 H 0.13 1.27 7.56 -51.93 -0.39 0.88 16 9 C -0.16 -1.47 6.13 -91.45 -0.56 -2.03 16 10 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.09 -0.87 5.74 -26.91 -0.15 -1.02 16 12 C -0.18 -2.34 5.70 -26.50 -0.15 -2.49 16 13 C 0.07 0.87 6.85 37.33 0.26 1.13 16 14 O -0.32 -4.69 9.46 -35.23 -0.33 -5.02 16 15 C 0.06 0.68 7.04 -26.74 -0.19 0.50 16 16 H 0.14 1.11 8.14 -51.93 -0.42 0.68 16 17 N -0.26 -5.39 10.18 32.99 0.34 -5.05 16 18 N -0.31 -7.16 8.79 30.31 0.27 -6.89 16 19 C 0.38 7.71 6.39 -318.87 -2.04 5.67 16 20 N -0.45 -9.59 4.76 -176.08 -0.84 -10.43 16 21 C 0.04 0.67 8.66 60.06 0.52 1.19 16 22 C 0.23 5.90 2.09 -68.87 -0.14 5.76 16 23 H 0.05 1.38 8.11 -51.93 -0.42 0.96 16 24 C -0.18 -4.58 8.27 37.16 0.31 -4.27 16 25 C -0.51 -13.61 7.94 -34.44 -0.27 -13.88 16 26 H 0.06 1.61 6.75 -52.49 -0.35 1.25 16 27 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 28 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 29 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 32 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 33 H 0.10 0.81 7.35 -52.49 -0.39 0.43 16 34 H 0.10 0.91 8.02 -52.49 -0.42 0.49 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.65 8.04 -51.92 -0.42 0.23 16 37 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.09 0.89 6.52 -51.93 -0.34 0.55 16 39 H 0.10 1.26 5.93 -51.93 -0.31 0.96 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.64 6.74 -51.92 -0.35 0.29 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.57 3.34 -51.93 -0.17 1.40 16 44 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.04 0.71 6.29 -51.93 -0.33 0.38 16 47 H 0.09 1.72 6.53 -51.93 -0.34 1.38 16 48 H 0.04 0.62 6.03 -51.93 -0.31 0.31 16 49 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 50 H 0.02 0.47 6.39 -51.93 -0.33 0.14 16 51 H 0.05 1.38 5.38 -51.92 -0.28 1.10 16 52 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -32.00 392.22 -10.89 -42.90 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.98 Total: 5.13 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.57 Total: -9.80 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.09 Total: -55.03 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.33 Total: -5.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.00 -10.89 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524401638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.321 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds