Wall clock time and date at job start Wed Apr 1 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00100 * 2 1 4 4 C 1.50699 * 120.00385 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46894 * 95.20079 * 4 2 1 6 6 C 1.36738 * 127.14118 * 274.26940 * 5 4 2 7 7 C 1.50699 * 126.34259 * 359.73604 * 6 5 4 8 8 H 1.09001 * 115.56594 * 71.86128 * 7 6 5 9 9 C 1.52431 * 117.52731 * 285.98433 * 7 6 5 10 10 H 1.08996 * 116.66127 * 145.58405 * 9 7 6 11 11 C 1.52535 * 119.22163 * 1.09784 * 9 7 6 12 12 C 1.53116 * 109.62176 * 310.91980 * 11 9 7 13 13 C 1.53326 * 108.39667 * 307.25284 * 12 11 9 14 14 O 1.42723 * 108.80980 * 72.01304 * 13 12 11 15 15 C 1.42636 * 114.99454 * 305.58736 * 14 13 12 16 16 H 1.09002 * 115.42954 * 233.23094 * 15 14 13 17 17 N 1.30286 * 107.30367 * 180.02562 * 6 5 4 18 18 N 1.28521 * 110.05972 * 359.97438 * 17 6 5 19 19 C 1.31224 * 109.85797 * 0.02562 * 18 17 6 20 20 N 1.38578 * 126.47103 * 179.97438 * 19 18 17 21 21 C 1.46899 * 111.00296 * 250.99188 * 20 19 18 22 22 C 1.46897 * 111.00262 * 14.95277 * 20 19 18 23 23 H 1.08999 * 109.47639 * 54.98884 * 22 20 19 24 24 C 1.52999 * 109.46934 * 294.99354 * 22 20 19 25 25 C 1.50703 * 109.47328 * 174.99460 * 22 20 19 26 26 H 1.07999 * 119.99934 * 359.97438 * 25 22 20 27 27 C 1.37882 * 119.99863 * 179.97438 * 25 22 20 28 28 N 1.31510 * 120.00151 * 359.97438 * 27 25 22 29 29 Si 1.86796 * 119.99629 * 179.97438 * 27 25 22 30 30 H 1.48506 * 109.46934 * 90.00285 * 29 27 25 31 31 H 1.48501 * 109.47022 * 209.99843 * 29 27 25 32 32 H 1.48497 * 109.47472 * 330.00191 * 29 27 25 33 33 H 1.07998 * 119.99977 * 175.39257 * 1 2 3 34 34 H 1.07999 * 120.00087 * 355.38916 * 1 2 3 35 35 H 1.08997 * 109.47255 * 270.00228 * 3 2 1 36 36 H 1.09010 * 109.47131 * 29.99765 * 3 2 1 37 37 H 1.08995 * 109.47443 * 150.00036 * 3 2 1 38 38 H 1.09001 * 109.46817 * 335.21104 * 4 2 1 39 39 H 1.08990 * 109.47393 * 215.20692 * 4 2 1 40 40 H 1.09001 * 109.44800 * 190.87255 * 11 9 7 41 41 H 1.09009 * 109.44795 * 70.96640 * 11 9 7 42 42 H 1.09001 * 109.67981 * 187.52632 * 12 11 9 43 43 H 1.09000 * 109.68192 * 66.97575 * 12 11 9 44 44 H 1.08996 * 109.57892 * 312.20807 * 13 12 11 45 45 H 1.09003 * 109.57854 * 191.80645 * 13 12 11 46 46 H 1.08996 * 109.47129 * 63.81915 * 21 20 19 47 47 H 1.09005 * 109.46620 * 183.81592 * 21 20 19 48 48 H 1.08999 * 109.47230 * 303.81015 * 21 20 19 49 49 H 1.08997 * 109.47487 * 180.02562 * 24 22 20 50 50 H 1.09004 * 109.47442 * 300.00159 * 24 22 20 51 51 H 1.09007 * 109.47033 * 59.99946 * 24 22 20 52 52 H 0.97001 * 120.00413 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 7 2.4162 -1.6659 -1.3749 6 6 1.6413 -2.3432 -2.2752 7 6 0.2498 -2.8706 -2.0372 8 1 -0.5352 -2.1167 -1.9775 9 6 0.1064 -4.1094 -1.1606 10 1 -0.7822 -4.1632 -0.5317 11 6 1.3547 -4.7381 -0.5499 12 6 2.4202 -4.9229 -1.6338 13 6 1.7920 -5.6888 -2.8042 14 8 0.8867 -4.8227 -3.4878 15 6 -0.1127 -4.2245 -2.6645 16 1 -1.1401 -4.3594 -3.0027 17 7 2.3314 -2.4533 -3.3748 18 7 3.4804 -1.8956 -3.2319 19 6 3.5861 -1.3960 -2.0231 20 7 4.6796 -0.7219 -1.5031 21 6 5.3714 -1.5382 -0.4966 22 6 5.6007 -0.3102 -2.5707 23 1 5.0587 0.2771 -3.3119 24 6 6.1945 -1.5519 -3.2389 25 6 6.7104 0.5232 -1.9831 26 1 6.7292 0.7270 -0.9227 27 6 7.7016 1.0255 -2.7994 28 7 7.6789 0.7770 -4.0906 29 14 9.0766 2.0591 -2.0712 30 1 10.2002 1.1754 -1.6687 31 1 9.5526 3.0345 -3.0847 32 1 8.5703 2.7890 -0.8812 33 1 -0.5400 -0.9323 -0.0751 34 1 -0.5400 0.9323 0.0752 35 1 2.2451 1.6198 -1.0276 36 1 1.4744 2.0648 0.5138 37 1 3.0159 1.1748 0.5138 38 1 1.4373 -2.0860 0.4318 39 1 2.9723 -1.1996 0.5930 40 1 1.1004 -5.7078 -0.1219 41 1 1.7430 -4.0869 0.2334 42 1 3.2587 -5.4912 -1.2312 43 1 2.7676 -3.9485 -1.9771 44 1 1.2520 -6.5564 -2.4252 45 1 2.5745 -6.0140 -3.4899 46 1 5.7765 -2.4325 -0.9700 47 1 6.1841 -0.9603 -0.0563 48 1 4.6671 -1.8272 0.2835 49 1 6.8783 -1.2464 -4.0308 50 1 6.7366 -2.1393 -2.4978 51 1 5.3918 -2.1547 -3.6639 52 1 8.3760 1.1307 -4.6650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524401638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:11 Heat of formation + Delta-G solvation = 105.203119 kcal Electronic energy + Delta-G solvation = -33483.601095 eV Core-core repulsion = 29487.034927 eV Total energy + Delta-G solvation = -3996.566168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.08356 -40.94699 -38.95016 -37.79238 -35.93155 -34.90169 -34.14902 -33.78450 -31.10308 -30.42665 -28.52314 -28.09152 -27.34169 -27.12640 -26.68756 -24.44993 -24.38344 -23.25460 -21.47299 -20.84751 -20.12870 -19.61562 -18.33921 -18.15790 -17.58414 -17.20381 -17.12972 -16.70731 -16.42590 -15.85791 -15.79827 -15.47941 -15.20937 -15.13371 -14.91512 -14.85088 -14.34515 -14.25027 -14.04319 -13.85253 -13.40277 -13.29314 -13.08430 -12.91909 -12.86785 -12.66782 -12.59756 -12.46633 -12.35851 -12.23273 -12.06348 -11.99837 -11.90574 -11.83152 -11.72133 -11.28309 -10.95988 -10.79381 -10.76771 -10.48815 -10.31447 -10.15696 -10.01741 -8.95690 -8.11265 -6.26551 0.83391 1.04225 1.43039 1.44280 1.54760 1.70853 2.04090 2.41808 2.48063 2.94393 3.11115 3.18316 3.41421 3.46062 3.62190 3.71362 3.78702 3.92928 3.95716 3.99174 4.06926 4.18596 4.38793 4.42669 4.46979 4.49226 4.55874 4.66969 4.69227 4.71387 4.77240 4.79278 4.86051 4.89569 4.93848 4.96736 4.97723 5.02675 5.07249 5.14460 5.17050 5.18428 5.31717 5.34838 5.49907 5.58691 5.64598 5.68978 5.82205 5.91486 6.13350 6.24954 6.39357 6.68467 6.83633 7.42411 8.05040 8.95153 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.003913 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.377038 B = 7153.689373 C = 8283.257518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C -0.110 4.110 4 C 0.142 3.858 5 N -0.464 5.464 6 C 0.223 3.777 7 C -0.114 4.114 8 H 0.152 0.848 9 C -0.127 4.127 10 H 0.167 0.833 11 C -0.089 4.089 12 C -0.188 4.188 13 C 0.070 3.930 14 O -0.360 6.360 15 C 0.048 3.952 16 H 0.168 0.832 17 N -0.313 5.313 18 N -0.366 5.366 19 C 0.361 3.639 20 N -0.453 5.453 21 C 0.041 3.959 22 C 0.247 3.753 23 H -0.007 1.007 24 C -0.160 4.160 25 C -0.520 4.520 26 H 0.071 0.929 27 C 0.011 3.989 28 N -0.920 5.920 29 Si 0.968 3.032 30 H -0.273 1.273 31 H -0.288 1.288 32 H -0.262 1.262 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.021 0.979 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.056 0.944 50 H 0.025 0.975 51 H 0.049 0.951 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.920 -10.626 15.273 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C -0.166 4.166 4 C 0.021 3.979 5 N -0.159 5.159 6 C -0.044 4.044 7 C -0.135 4.135 8 H 0.169 0.831 9 C -0.145 4.145 10 H 0.184 0.816 11 C -0.126 4.126 12 C -0.226 4.226 13 C -0.007 4.007 14 O -0.278 6.278 15 C -0.011 4.011 16 H 0.185 0.815 17 N -0.151 5.151 18 N -0.209 5.209 19 C 0.004 3.996 20 N -0.176 5.176 21 C -0.106 4.106 22 C 0.141 3.859 23 H 0.011 0.989 24 C -0.219 4.219 25 C -0.559 4.559 26 H 0.089 0.911 27 C -0.188 4.188 28 N -0.559 5.559 29 Si 0.793 3.207 30 H -0.199 1.199 31 H -0.214 1.214 32 H -0.186 1.186 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.040 0.960 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.074 0.926 50 H 0.044 0.956 51 H 0.068 0.932 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.560 -10.479 13.743 26.101 hybrid contribution 1.596 0.750 0.517 1.837 sum -17.964 -9.729 14.260 24.914 Atomic orbital electron populations 1.24102 0.94108 1.03883 0.96459 1.21829 0.96249 0.94705 1.03755 1.20716 1.00319 0.94975 1.00632 1.21217 1.01812 0.96247 0.78585 1.46368 1.11215 1.44313 1.14016 1.23707 0.96137 0.98428 0.86138 1.21141 0.88746 0.93692 1.09903 0.83089 1.22937 1.02064 0.96370 0.93176 0.81586 1.21064 0.92623 1.02326 0.96621 1.22685 0.99741 1.02158 0.98019 1.22521 0.92148 0.91883 0.94104 1.87884 1.43111 1.62810 1.33980 1.23439 0.93587 0.92764 0.91324 0.81520 1.74059 1.00098 1.18761 1.22194 1.74769 1.13511 1.16108 1.16529 1.22971 0.89406 0.97334 0.89868 1.59191 1.06950 1.35156 1.16328 1.22383 0.99105 0.95604 0.93462 1.18819 0.88344 0.92277 0.86470 0.98917 1.22326 1.00591 0.98313 1.00701 1.21316 1.07752 1.31834 0.94972 0.91105 1.25788 1.00492 0.97478 0.95019 1.70101 1.34877 1.45965 1.05002 0.85412 0.78872 0.78318 0.78141 1.19891 1.21395 1.18636 0.85809 0.86814 0.94811 0.90056 0.92338 0.85634 0.88403 0.88075 0.90990 0.91467 0.92247 0.90510 0.91037 0.95987 0.89409 0.90216 0.92555 0.95628 0.93205 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 13.88 67.78 0.94 -1.30 16 2 C -0.16 -3.52 5.63 -16.49 -0.09 -3.61 16 3 C -0.11 -2.82 10.03 71.24 0.71 -2.11 16 4 C 0.14 3.15 5.99 85.63 0.51 3.66 16 5 N -0.46 -14.61 2.59 -518.92 -1.34 -15.95 16 6 C 0.22 7.09 4.36 137.64 0.60 7.69 16 7 C -0.11 -2.28 5.88 -11.54 -0.07 -2.34 16 8 H 0.15 2.26 7.56 -2.39 -0.02 2.25 16 9 C -0.13 -1.57 6.13 -11.33 -0.07 -1.64 16 10 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 11 C -0.09 -1.34 5.74 30.48 0.17 -1.17 16 12 C -0.19 -4.62 5.70 30.74 0.18 -4.45 16 13 C 0.07 1.69 6.85 72.09 0.49 2.19 16 14 O -0.36 -10.09 9.46 -148.98 -1.41 -11.50 16 15 C 0.05 0.88 7.04 30.59 0.22 1.10 16 16 H 0.17 1.93 8.14 -2.39 -0.02 1.91 16 17 N -0.31 -13.42 10.18 -49.54 -0.50 -13.93 16 18 N -0.37 -17.77 8.79 -58.00 -0.51 -18.28 16 19 C 0.36 15.30 6.39 260.11 1.66 16.96 16 20 N -0.45 -20.02 4.76 -711.01 -3.39 -23.40 16 21 C 0.04 1.54 8.66 127.69 1.11 2.65 16 22 C 0.25 13.44 2.09 44.17 0.09 13.54 16 23 H -0.01 -0.46 8.11 -2.39 -0.02 -0.48 16 24 C -0.16 -8.78 8.27 71.98 0.60 -8.19 16 25 C -0.52 -28.70 7.94 25.60 0.20 -28.49 16 26 H 0.07 3.71 6.75 -2.91 -0.02 3.69 16 27 C 0.01 0.63 5.30 84.66 0.45 1.08 16 28 N -0.92 -55.51 11.32 21.45 0.24 -55.27 16 29 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 31 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 32 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 33 H 0.12 1.25 7.35 -2.91 -0.02 1.23 16 34 H 0.11 1.51 8.02 -2.91 -0.02 1.48 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.65 8.04 -2.38 -0.02 1.64 16 37 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 38 H 0.13 1.86 6.52 -2.39 -0.02 1.84 16 39 H 0.10 2.23 5.93 -2.39 -0.01 2.21 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.04 6.74 -2.38 -0.02 1.03 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.96 3.34 -2.39 -0.01 1.95 16 44 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.02 0.86 6.29 -2.39 -0.02 0.85 16 47 H 0.09 3.31 6.53 -2.38 -0.02 3.29 16 48 H 0.08 2.31 6.03 -2.39 -0.01 2.30 16 49 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 50 H 0.02 1.31 6.39 -2.39 -0.02 1.29 16 51 H 0.05 2.76 5.38 -2.38 -0.01 2.75 16 52 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -78.87 392.22 3.75 -75.12 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.93 Total: 21.84 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 7.70 Total: -4.44 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -5.50 Total: -126.83 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -1.41 Total: -11.50 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.87 3.75 -75.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524401638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.321 kcal (2) G-P(sol) polarization free energy of solvation -78.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds