Wall clock time and date at job start Wed Apr 1 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47051 * 2 1 4 4 N 1.46500 * 109.47387 * 240.00176 * 2 1 3 5 5 C 1.34773 * 120.00491 * 84.72320 * 4 2 1 6 6 O 1.21586 * 119.99719 * 0.27523 * 5 4 2 7 7 N 1.34770 * 120.00037 * 180.27768 * 5 4 2 8 8 C 1.39964 * 119.99518 * 174.97617 * 7 5 4 9 9 C 1.39288 * 119.94592 * 144.85530 * 8 7 5 10 10 C 1.38485 * 120.43122 * 179.97438 * 9 8 7 11 11 C 1.37687 * 120.31888 * 359.97438 * 10 9 8 12 12 C 1.40736 * 119.88351 * 0.02562 * 11 10 9 13 13 C 1.41410 * 120.21136 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00136 * 25.41039 * 13 12 11 15 15 C 1.39932 * 120.00106 * 205.41991 * 13 12 11 16 16 N 1.30839 * 119.99843 * 14.68921 * 15 13 12 17 17 Si 1.86800 * 120.00054 * 194.69288 * 15 13 12 18 18 H 1.48497 * 109.46945 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46825 * 119.99733 * 17 15 13 20 20 H 1.48500 * 109.47281 * 239.99359 * 17 15 13 21 21 C 1.38228 * 119.94580 * 324.57221 * 8 7 5 22 22 C 1.52998 * 109.47097 * 119.99571 * 2 1 3 23 23 H 1.08995 * 109.49089 * 302.27066 * 22 2 1 24 24 C 1.53053 * 109.48647 * 62.31209 * 22 2 1 25 25 N 1.46955 * 109.36477 * 178.37049 * 24 22 2 26 26 C 1.46901 * 110.99907 * 176.81438 * 25 24 22 27 27 C 1.46962 * 110.87856 * 300.67805 * 25 24 22 28 28 C 1.53053 * 109.36416 * 59.32159 * 27 25 24 29 29 N 1.46952 * 109.49147 * 182.22081 * 22 2 1 30 30 C 1.46908 * 110.99551 * 56.84965 * 29 22 2 31 31 H 1.08993 * 109.47497 * 297.27660 * 1 2 3 32 32 H 1.08997 * 109.47053 * 57.27490 * 1 2 3 33 33 H 1.09001 * 109.46681 * 177.26979 * 1 2 3 34 34 H 0.97007 * 119.99634 * 265.00158 * 4 2 1 35 35 H 0.96999 * 120.00565 * 354.96658 * 7 5 4 36 36 H 1.08003 * 119.78359 * 359.97212 * 9 8 7 37 37 H 1.07994 * 119.84245 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.05769 * 180.02562 * 11 10 9 39 39 H 0.97000 * 119.99842 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.16193 * 0.02685 * 21 8 7 41 41 H 1.09004 * 109.48856 * 298.33764 * 24 22 2 42 42 H 1.09002 * 109.48965 * 58.40074 * 24 22 2 43 43 H 1.08999 * 109.47354 * 60.00081 * 26 25 24 44 44 H 1.09004 * 109.47002 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.47223 * 299.99147 * 26 25 24 46 46 H 1.08998 * 109.48858 * 179.29201 * 27 25 24 47 47 H 1.09005 * 109.49073 * 299.35263 * 27 25 24 48 48 H 1.08999 * 109.48613 * 61.56239 * 28 27 25 49 49 H 1.09002 * 109.48779 * 181.61090 * 28 27 25 50 50 H 1.08996 * 109.47347 * 53.95436 * 30 29 22 51 51 H 1.08998 * 109.46571 * 173.95674 * 30 29 22 52 52 H 1.08999 * 109.47157 * 293.95679 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1419 -0.0197 -2.3585 6 8 1.8527 1.1600 -2.4131 7 7 2.5859 -0.6564 -3.4602 8 6 2.6146 0.0109 -4.6902 9 6 3.6383 -0.2489 -5.5983 10 6 3.6763 0.4052 -6.8184 11 6 2.7012 1.3198 -7.1474 12 6 1.6607 1.5925 -6.2398 13 6 0.6558 2.5310 -6.5703 14 1 0.4255 2.7334 -7.6059 15 6 -0.0400 3.1976 -5.5556 16 7 0.4160 3.1802 -4.3294 17 14 -1.6199 4.1121 -5.9518 18 1 -1.9179 3.9806 -7.4006 19 1 -2.7371 3.5353 -5.1617 20 1 -1.4603 5.5479 -5.6080 21 6 1.6239 0.9222 -5.0042 22 6 2.0400 -0.7211 1.2493 23 1 1.6440 -0.2316 2.1389 24 6 1.5781 -2.1800 1.2210 25 7 2.1019 -2.8800 2.4021 26 6 1.6174 -4.2660 2.4507 27 6 3.5706 -2.8343 2.4295 28 6 4.0325 -1.3754 2.4578 29 7 3.5085 -0.6751 1.2769 30 6 3.9927 0.7111 1.2286 31 1 -0.3634 0.4709 0.9133 32 1 -0.3633 0.5556 -0.8645 33 1 -0.3633 -1.0265 -0.0490 34 1 2.2491 -1.6318 -1.1526 35 1 2.8856 -1.5770 -3.4007 36 1 4.4075 -0.9650 -5.3493 37 1 4.4746 0.1968 -7.5152 38 1 2.7347 1.8272 -8.1002 39 1 -0.0666 3.6420 -3.6260 40 1 0.8274 1.1212 -4.3024 41 1 0.4887 -2.2168 1.2299 42 1 1.9511 -2.6621 0.3173 43 1 1.9442 -4.7967 1.5564 44 1 2.0205 -4.7611 3.3342 45 1 0.5284 -4.2687 2.4973 46 1 3.9339 -3.3482 3.3194 47 1 3.9663 -3.3239 1.5396 48 1 3.6594 -0.8934 3.3614 49 1 5.1219 -1.3387 2.4492 50 1 3.5250 1.2873 2.0268 51 1 5.0749 0.7226 1.3582 52 1 3.7374 1.1517 0.2649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548607381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:22 Heat of formation + Delta-G solvation = 19.876783 kcal Electronic energy + Delta-G solvation = -31731.005544 eV Core-core repulsion = 27730.739349 eV Total energy + Delta-G solvation = -4000.266196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.35259 -39.22137 -37.26441 -36.02266 -34.88944 -33.99655 -33.01171 -31.40613 -29.79023 -29.40150 -28.88751 -27.68687 -25.57780 -25.14262 -24.73591 -23.15765 -22.03719 -21.04886 -20.74143 -19.78395 -19.26829 -17.96416 -17.30099 -16.33423 -15.97998 -15.73163 -15.36543 -15.07989 -14.83572 -14.72458 -14.59781 -14.47330 -14.14250 -14.03989 -13.58141 -13.16614 -13.03800 -12.74958 -12.69523 -12.62294 -12.42168 -12.19300 -12.00933 -11.90279 -11.73106 -11.59654 -11.46558 -11.37966 -11.08912 -10.97755 -10.94958 -10.64453 -10.43656 -10.38372 -9.90187 -9.60483 -9.21702 -8.89610 -8.84263 -8.71433 -8.54567 -8.47101 -7.23299 -6.77860 -6.41514 -4.18170 2.86219 3.07663 3.17999 3.22936 3.30717 3.33004 3.57666 3.66852 4.05602 4.08348 4.49282 4.62144 4.75415 4.82850 4.85976 4.91867 5.01188 5.03695 5.18637 5.20361 5.32469 5.38388 5.43584 5.45869 5.53920 5.54487 5.60523 5.64962 5.76681 5.81610 5.85779 5.96033 6.12184 6.30970 6.37179 6.56344 6.62123 6.64809 6.83725 6.86704 6.91281 6.99391 7.06298 7.16498 7.26916 7.43629 7.56928 7.87815 8.00305 8.11096 8.24731 8.48378 8.70896 8.83036 9.07846 9.13700 9.43156 10.40984 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002952 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.157894 B = 9482.737630 C =10464.532391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.093 0.907 4 N -0.737 5.737 5 C 0.688 3.312 6 O -0.537 6.537 7 N -0.686 5.686 8 C 0.162 3.838 9 C -0.269 4.269 10 C -0.081 4.081 11 C -0.241 4.241 12 C 0.118 3.882 13 C -0.465 4.465 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.757 5.757 17 Si 0.900 3.100 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.276 1.276 21 C -0.155 4.155 22 C 0.080 3.920 23 H 0.062 0.938 24 C 0.061 3.939 25 N -0.546 5.546 26 C 0.025 3.975 27 C 0.056 3.944 28 C 0.056 3.944 29 N -0.534 5.534 30 C 0.022 3.978 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.388 0.612 35 H 0.388 0.612 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.278 0.722 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.027 0.973 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.079 0.921 50 H 0.026 0.974 51 H 0.066 0.934 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -12.151 16.662 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.111 0.889 4 N -0.395 5.395 5 C 0.388 3.612 6 O -0.409 6.409 7 N -0.333 5.333 8 C 0.070 3.930 9 C -0.290 4.290 10 C -0.100 4.100 11 C -0.261 4.261 12 C 0.115 3.885 13 C -0.494 4.494 14 H 0.093 0.907 15 C -0.150 4.150 16 N -0.380 5.380 17 Si 0.725 3.275 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.202 1.202 21 C -0.177 4.177 22 C -0.029 4.029 23 H 0.080 0.920 24 C -0.068 4.068 25 N -0.270 5.270 26 C -0.123 4.123 27 C -0.073 4.073 28 C -0.072 4.072 29 N -0.259 5.259 30 C -0.126 4.126 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.222 0.778 35 H 0.221 0.779 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.156 0.844 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.045 0.955 51 H 0.085 0.915 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.356 -10.926 16.910 20.270 hybrid contribution -0.286 -0.509 0.026 0.585 sum 2.070 -11.435 16.936 20.540 Atomic orbital electron populations 1.22251 0.95305 1.02023 1.02864 1.20690 0.93383 0.97194 0.82221 0.88938 1.45085 1.72719 1.13185 1.08526 1.16104 0.79336 0.85654 0.80088 1.91144 1.53647 1.12795 1.83360 1.42562 1.68411 1.15343 1.06958 1.17376 0.95749 0.96735 0.83163 1.19996 1.01240 1.10148 0.97643 1.20258 0.97609 0.96909 0.95259 1.20953 0.98273 1.05424 1.01465 1.17500 0.90478 0.89880 0.90620 1.19528 1.16302 1.19708 0.93880 0.90657 1.25958 0.98046 0.96167 0.94789 1.69943 1.35031 1.32069 1.00978 0.86400 0.82092 0.79253 0.79754 1.18623 1.19986 1.20164 1.21411 0.99047 0.98031 0.99170 1.22015 0.87781 0.95667 0.97444 0.92027 1.22261 1.00076 0.93270 0.91156 1.62160 1.08972 1.15322 1.40542 1.22348 1.01051 0.88226 1.00692 1.22188 0.87420 0.96560 1.01093 1.22170 0.99670 0.93679 0.91675 1.62096 1.08093 1.15964 1.39758 1.22427 1.00232 0.87848 1.02054 0.92088 0.90965 0.92651 0.77803 0.77895 0.89641 0.89362 0.89197 0.91057 0.84421 0.89677 0.93905 0.95463 0.91394 0.91252 0.90402 0.93875 0.94118 0.90217 0.95518 0.91520 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.11 37.16 0.34 -1.76 16 2 C 0.17 2.26 1.93 -67.93 -0.13 2.13 16 3 H 0.09 1.45 5.81 -51.93 -0.30 1.15 16 4 N -0.74 -10.63 4.88 -58.68 -0.29 -10.91 16 5 C 0.69 13.58 8.25 -86.93 -0.72 12.86 16 6 O -0.54 -13.19 13.82 5.29 0.07 -13.12 16 7 N -0.69 -13.41 5.34 -14.27 -0.08 -13.49 16 8 C 0.16 3.91 6.23 -83.76 -0.52 3.38 16 9 C -0.27 -6.14 9.97 -39.10 -0.39 -6.53 16 10 C -0.08 -1.90 10.02 -39.69 -0.40 -2.29 16 11 C -0.24 -6.18 9.79 -38.84 -0.38 -6.56 16 12 C 0.12 3.32 5.57 -106.85 -0.60 2.72 16 13 C -0.46 -12.91 9.06 -37.74 -0.34 -13.25 16 14 H 0.08 2.01 7.89 -52.49 -0.41 1.59 16 15 C 0.07 1.87 5.20 -17.34 -0.09 1.78 16 16 N -0.76 -20.95 10.85 55.55 0.60 -20.35 16 17 Si 0.90 19.63 29.58 -169.99 -5.03 14.60 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.16 -4.24 7.28 -38.69 -0.28 -4.52 16 22 C 0.08 0.86 1.80 -67.66 -0.12 0.74 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 C 0.06 0.58 4.39 -3.77 -0.02 0.56 16 25 N -0.55 -4.86 4.97 -242.74 -1.21 -6.06 16 26 C 0.03 0.18 9.60 60.07 0.58 0.76 16 27 C 0.06 0.46 5.62 -3.76 -0.02 0.44 16 28 C 0.06 0.51 5.61 -3.77 -0.02 0.48 16 29 N -0.53 -5.75 4.66 -234.73 -1.09 -6.85 16 30 C 0.02 0.25 8.99 60.07 0.54 0.79 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.62 6.67 -51.93 -0.35 0.27 16 34 H 0.39 4.75 6.73 -40.82 -0.27 4.48 16 35 H 0.39 6.07 8.84 -40.82 -0.36 5.71 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 40 H 0.14 4.02 4.62 -52.49 -0.24 3.78 16 41 H 0.08 0.78 6.64 -51.93 -0.34 0.43 16 42 H 0.04 0.43 6.35 -51.93 -0.33 0.10 16 43 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 50 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 51 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 52 H 0.08 1.11 6.56 -51.93 -0.34 0.77 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -31.77 403.86 -11.92 -43.69 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -8.42 Total: 14.69 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.57 Total: -8.28 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -2.06 Total: -57.66 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.77 -11.92 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548607381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.563 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds