Wall clock time and date at job start Wed Apr 1 2020 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47040 * 2 1 4 4 N 1.46502 * 109.46975 * 239.99910 * 2 1 3 5 5 C 1.36932 * 119.99989 * 85.00139 * 4 2 1 6 6 H 1.07998 * 120.00032 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00117 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47052 * 89.99941 * 9 7 5 11 11 H 1.48502 * 109.47463 * 209.99893 * 9 7 5 12 12 H 1.48499 * 109.46994 * 329.99965 * 9 7 5 13 13 C 1.53003 * 109.47155 * 120.00039 * 2 1 3 14 14 H 1.08994 * 109.58649 * 302.23780 * 13 2 1 15 15 C 1.53192 * 109.58449 * 62.51847 * 13 2 1 16 16 C 1.53357 * 109.14812 * 174.43548 * 15 13 2 17 17 C 1.53039 * 109.60791 * 298.71469 * 16 15 13 18 18 C 1.53187 * 109.31232 * 61.36954 * 17 16 15 19 19 N 1.46919 * 108.77906 * 305.36615 * 18 17 16 20 20 C 1.34776 * 120.63231 * 233.63199 * 19 18 17 21 21 O 1.21605 * 119.99996 * 184.75001 * 20 19 18 22 22 C 1.47435 * 120.00109 * 4.75394 * 20 19 18 23 23 C 1.41470 * 126.48189 * 329.90099 * 22 20 19 24 24 N 1.30610 * 108.06673 * 179.80451 * 23 22 20 25 25 N 1.39626 * 108.87024 * 0.42659 * 24 23 22 26 26 C 1.34598 * 108.34272 * 359.75575 * 25 24 23 27 27 C 1.50807 * 124.57594 * 179.97438 * 26 25 24 28 28 C 1.53446 * 108.19960 * 344.33102 * 27 26 25 29 29 C 1.53160 * 109.11886 * 48.34493 * 28 27 26 30 30 C 1.46689 * 127.22745 * 179.79403 * 25 24 23 31 31 H 1.09005 * 109.47144 * 293.31388 * 1 2 3 32 32 H 1.09000 * 109.47264 * 53.31511 * 1 2 3 33 33 H 1.08999 * 109.47579 * 173.31925 * 1 2 3 34 34 H 0.97002 * 119.99945 * 265.00311 * 4 2 1 35 35 H 0.97003 * 119.99903 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.49833 * 294.51220 * 15 13 2 37 37 H 1.08995 * 109.50346 * 54.61218 * 15 13 2 38 38 H 1.09001 * 109.42028 * 178.67060 * 16 15 13 39 39 H 1.08999 * 109.42001 * 58.75122 * 16 15 13 40 40 H 1.09005 * 109.49273 * 301.41539 * 17 16 15 41 41 H 1.09002 * 109.49824 * 181.32459 * 17 16 15 42 42 H 1.09004 * 109.58460 * 185.57568 * 18 17 16 43 43 H 1.08996 * 109.70246 * 65.22612 * 18 17 16 44 44 H 1.07996 * 125.96518 * 359.97438 * 23 22 20 45 45 H 1.08996 * 109.71368 * 104.00554 * 27 26 25 46 46 H 1.08998 * 109.71342 * 224.60814 * 27 26 25 47 47 H 1.08995 * 109.53182 * 168.24198 * 28 27 26 48 48 H 1.08999 * 109.52641 * 288.45178 * 28 27 26 49 49 H 1.09003 * 109.46224 * 50.78413 * 29 28 27 50 50 H 1.09002 * 109.45966 * 170.75815 * 29 28 27 51 51 H 1.09006 * 109.57524 * 42.74994 * 30 25 24 52 52 H 1.08999 * 109.68569 * 282.42872 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9233 -1.9394 -3.4504 9 14 2.7890 0.2697 -5.1185 10 1 4.1512 0.8547 -5.2040 11 1 2.5781 -0.6617 -6.2558 12 1 1.7789 1.3568 -5.1752 13 6 2.0400 -0.7213 1.2493 14 1 1.6454 -0.2326 2.1400 15 6 1.5832 -2.1832 1.2206 16 6 2.2139 -2.9305 2.4019 17 6 3.7387 -2.8954 2.2769 18 6 4.2168 -1.4406 2.3156 19 7 3.5085 -0.6821 1.2756 20 6 4.1927 0.0356 0.3629 21 8 3.5951 0.7276 -0.4388 22 6 5.6658 -0.0183 0.3362 23 6 6.5197 -0.2353 1.4431 24 7 7.7529 -0.2172 1.0131 25 7 7.7477 0.0178 -0.3633 26 6 6.4696 0.1386 -0.7676 27 6 6.0431 0.3993 -2.1904 28 6 7.2683 0.8841 -2.9769 29 6 8.4461 -0.0549 -2.6996 30 6 8.9115 0.1212 -1.2502 31 1 -0.3634 0.4067 0.9438 32 1 -0.3634 0.6139 -0.8241 33 1 -0.3634 -1.0206 -0.1196 34 1 2.2489 -1.6318 -1.1526 35 1 3.2466 -2.3966 -4.2425 36 1 0.4967 -2.2265 1.2966 37 1 1.9017 -2.6457 0.2864 38 1 1.8730 -3.9659 2.3994 39 1 1.9149 -2.4521 3.3346 40 1 4.0369 -3.3514 1.3327 41 1 4.1845 -3.4470 3.1046 42 1 5.2900 -1.4035 2.1280 43 1 4.0018 -1.0090 3.2931 44 1 6.2065 -0.3916 2.4648 45 1 5.6615 -0.5202 -2.6342 46 1 5.2677 1.1651 -2.2074 47 1 7.0420 0.8798 -4.0430 48 1 7.5264 1.8952 -2.6622 49 1 8.1329 -1.0869 -2.8578 50 1 9.2672 0.1831 -3.3757 51 1 9.6311 -0.6588 -1.0011 52 1 9.3777 1.0994 -1.1318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566534587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:25 Heat of formation + Delta-G solvation = 97.414255 kcal Electronic energy + Delta-G solvation = -33936.704218 eV Core-core repulsion = 29939.800299 eV Total energy + Delta-G solvation = -3996.903919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.42668 -39.66612 -36.54552 -36.44010 -35.02986 -32.48154 -32.15832 -31.82989 -30.26772 -29.53280 -28.21818 -27.91010 -24.92099 -24.20929 -23.78394 -23.20669 -22.14830 -21.75724 -20.31303 -19.99468 -18.73449 -18.10100 -16.93624 -16.58452 -15.68631 -15.33178 -15.24604 -14.81872 -14.49477 -14.30822 -14.17590 -13.90941 -13.85827 -13.61983 -13.55776 -13.36634 -13.11375 -12.72375 -12.49916 -12.29429 -12.09189 -11.98286 -11.73088 -11.59582 -11.30087 -11.10735 -11.01516 -10.92722 -10.77896 -10.67058 -10.59600 -10.56393 -10.41328 -10.34679 -10.15075 -10.02669 -9.67872 -9.30107 -8.98797 -8.70859 -8.10669 -7.96383 -7.75705 -6.51487 -5.45831 -2.66841 2.04594 2.56543 2.60858 3.53349 3.61102 3.62056 3.63093 4.21070 4.44862 4.69987 4.83089 4.84021 4.88406 5.04033 5.06249 5.18449 5.20267 5.27002 5.41419 5.43866 5.48019 5.57593 5.64990 5.67693 5.76222 5.79227 5.84308 5.89498 5.92934 5.93827 6.02237 6.07208 6.13039 6.21743 6.28722 6.32196 6.39246 6.43774 6.49889 6.54961 6.60616 6.67496 6.70378 6.75873 7.01590 7.11979 7.21748 7.24078 7.56126 7.88431 8.03508 8.27693 8.72420 9.29889 9.83732 10.42738 10.79922 11.78194 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008239 B = 0.006843 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.650372 B = 4090.654800 C = 6664.488297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.086 0.914 4 N -0.703 5.703 5 C -0.165 4.165 6 H 0.063 0.937 7 C -0.029 4.029 8 N -0.947 5.947 9 Si 0.887 3.113 10 H -0.295 1.295 11 H -0.300 1.300 12 H -0.288 1.288 13 C 0.149 3.851 14 H 0.059 0.941 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.088 3.912 19 N -0.607 5.607 20 C 0.583 3.417 21 O -0.465 6.465 22 C -0.279 4.279 23 C 0.058 3.942 24 N -0.310 5.310 25 N -0.367 5.367 26 C 0.165 3.835 27 C -0.062 4.062 28 C -0.128 4.128 29 C -0.138 4.138 30 C 0.135 3.865 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.378 0.622 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.195 0.805 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.380 1.081 10.827 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.058 3.942 3 H 0.103 0.897 4 N -0.344 5.344 5 C -0.297 4.297 6 H 0.081 0.919 7 C -0.222 4.222 8 N -0.600 5.600 9 Si 0.721 3.279 10 H -0.223 1.223 11 H -0.227 1.227 12 H -0.214 1.214 13 C 0.045 3.955 14 H 0.077 0.923 15 C -0.170 4.170 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.036 4.036 19 N -0.343 5.343 20 C 0.370 3.630 21 O -0.336 6.336 22 C -0.293 4.293 23 C -0.128 4.128 24 N -0.129 5.129 25 N -0.149 5.149 26 C 0.035 3.965 27 C -0.100 4.100 28 C -0.165 4.165 29 C -0.177 4.177 30 C 0.014 3.986 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.213 0.787 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.211 0.789 45 H 0.125 0.875 46 H 0.131 0.869 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.107 0.893 51 H 0.108 0.892 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.446 1.536 10.477 14.190 hybrid contribution -0.547 -0.121 -1.024 1.167 sum 8.899 1.415 9.453 13.060 Atomic orbital electron populations 1.22596 1.00413 1.00807 0.99147 1.20724 0.89950 0.98198 0.85341 0.89653 1.42393 1.77257 1.09633 1.05166 1.19094 1.31215 0.93061 0.86332 0.91856 1.24466 1.04796 0.95875 0.97066 1.69652 1.54152 1.08363 1.27790 0.86433 0.77648 0.78580 0.85230 1.22328 1.22664 1.21413 1.21510 0.78991 0.95675 0.99278 0.92338 1.22034 1.00022 0.95851 0.99094 1.21553 0.95244 1.00092 0.98498 1.21893 0.96380 0.96722 1.02238 1.22262 0.98850 0.91467 0.91015 1.47599 1.05824 1.49772 1.31114 1.17082 0.84629 0.80948 0.80312 1.90925 1.67395 1.38758 1.36545 1.20026 0.95058 1.21532 0.92680 1.24324 0.89713 0.99068 0.99736 1.76968 1.21541 1.25085 0.89334 1.48445 1.05415 1.55121 1.05914 1.21461 0.83695 0.94437 0.96939 1.20636 0.97648 1.05479 0.86266 1.21729 0.94464 0.98645 1.01710 1.21996 0.99750 1.02050 0.93873 1.21804 0.85692 1.03105 0.87970 0.95016 0.93093 0.93663 0.78722 0.94486 0.91285 0.90396 0.92424 0.92543 0.91328 0.91758 0.88196 0.92442 0.78893 0.87512 0.86935 0.90193 0.91664 0.90366 0.89316 0.89205 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.02 37.16 0.34 -2.81 16 2 C 0.17 3.43 1.89 -67.93 -0.13 3.30 16 3 H 0.09 1.94 5.92 -52.11 -0.31 1.63 16 4 N -0.70 -17.16 3.46 -53.43 -0.18 -17.34 16 5 C -0.16 -4.50 8.04 -15.06 -0.12 -4.62 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.03 -0.83 5.50 -17.43 -0.10 -0.93 16 8 N -0.95 -27.95 13.06 55.49 0.72 -27.23 16 9 Si 0.89 22.54 29.55 -169.99 -5.02 17.52 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 C 0.15 2.53 2.73 -67.60 -0.18 2.34 16 14 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.13 -2.08 4.84 -26.45 -0.13 -2.21 16 16 C -0.12 -1.48 5.89 -26.53 -0.16 -1.64 16 17 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 18 C 0.09 1.16 5.63 -3.72 -0.02 1.13 16 19 N -0.61 -10.27 2.97 -166.49 -0.49 -10.77 16 20 C 0.58 11.56 7.04 -12.52 -0.09 11.47 16 21 O -0.47 -10.68 8.82 5.27 0.05 -10.64 16 22 C -0.28 -5.08 5.71 -105.21 -0.60 -5.68 16 23 C 0.06 0.89 9.76 -16.84 -0.16 0.72 16 24 N -0.31 -4.99 12.54 30.93 0.39 -4.60 16 25 N -0.37 -5.78 4.01 -56.39 -0.23 -6.01 16 26 C 0.17 2.97 6.64 -81.62 -0.54 2.43 16 27 C -0.06 -1.14 5.79 -27.60 -0.16 -1.30 16 28 C -0.13 -1.78 5.98 -26.42 -0.16 -1.94 16 29 C -0.14 -1.56 5.93 -26.53 -0.16 -1.72 16 30 C 0.14 1.57 7.27 -3.82 -0.03 1.54 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.84 6.99 -51.93 -0.36 0.48 16 34 H 0.38 9.94 5.85 -40.82 -0.24 9.71 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 1.04 6.96 -51.93 -0.36 0.68 16 37 H 0.08 1.51 6.23 -51.93 -0.32 1.18 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.30 3.11 -51.93 -0.16 1.13 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.19 2.31 5.92 -52.49 -0.31 2.00 16 45 H 0.11 2.32 8.14 -51.93 -0.42 1.89 16 46 H 0.11 2.36 7.29 -51.93 -0.38 1.98 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 49 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -31.92 385.96 -9.84 -41.77 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -8.33 Total: 13.25 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.56 Total: -1.78 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.21 Total: -65.94 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.05 Total: -10.64 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.92 -9.84 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.181 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds