Wall clock time and date at job start Wed Apr 1 2020 05:13:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.47040 * 2 1
4 4 N 1.46502 * 109.46975 * 239.99910 * 2 1 3
5 5 C 1.36932 * 119.99989 * 85.00139 * 4 2 1
6 6 H 1.07998 * 120.00032 * 359.97438 * 5 4 2
7 7 C 1.38811 * 120.00117 * 180.02562 * 5 4 2
8 8 N 1.31620 * 120.00015 * 0.02562 * 7 5 4
9 9 Si 1.86801 * 120.00076 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.47052 * 89.99941 * 9 7 5
11 11 H 1.48502 * 109.47463 * 209.99893 * 9 7 5
12 12 H 1.48499 * 109.46994 * 329.99965 * 9 7 5
13 13 C 1.53003 * 109.47155 * 120.00039 * 2 1 3
14 14 H 1.08994 * 109.58649 * 302.23780 * 13 2 1
15 15 C 1.53192 * 109.58449 * 62.51847 * 13 2 1
16 16 C 1.53357 * 109.14812 * 174.43548 * 15 13 2
17 17 C 1.53039 * 109.60791 * 298.71469 * 16 15 13
18 18 C 1.53187 * 109.31232 * 61.36954 * 17 16 15
19 19 N 1.46919 * 108.77906 * 305.36615 * 18 17 16
20 20 C 1.34776 * 120.63231 * 233.63199 * 19 18 17
21 21 O 1.21605 * 119.99996 * 184.75001 * 20 19 18
22 22 C 1.47435 * 120.00109 * 4.75394 * 20 19 18
23 23 C 1.41470 * 126.48189 * 329.90099 * 22 20 19
24 24 N 1.30610 * 108.06673 * 179.80451 * 23 22 20
25 25 N 1.39626 * 108.87024 * 0.42659 * 24 23 22
26 26 C 1.34598 * 108.34272 * 359.75575 * 25 24 23
27 27 C 1.50807 * 124.57594 * 179.97438 * 26 25 24
28 28 C 1.53446 * 108.19960 * 344.33102 * 27 26 25
29 29 C 1.53160 * 109.11886 * 48.34493 * 28 27 26
30 30 C 1.46689 * 127.22745 * 179.79403 * 25 24 23
31 31 H 1.09005 * 109.47144 * 293.31388 * 1 2 3
32 32 H 1.09000 * 109.47264 * 53.31511 * 1 2 3
33 33 H 1.08999 * 109.47579 * 173.31925 * 1 2 3
34 34 H 0.97002 * 119.99945 * 265.00311 * 4 2 1
35 35 H 0.97003 * 119.99903 * 180.02562 * 8 7 5
36 36 H 1.09006 * 109.49833 * 294.51220 * 15 13 2
37 37 H 1.08995 * 109.50346 * 54.61218 * 15 13 2
38 38 H 1.09001 * 109.42028 * 178.67060 * 16 15 13
39 39 H 1.08999 * 109.42001 * 58.75122 * 16 15 13
40 40 H 1.09005 * 109.49273 * 301.41539 * 17 16 15
41 41 H 1.09002 * 109.49824 * 181.32459 * 17 16 15
42 42 H 1.09004 * 109.58460 * 185.57568 * 18 17 16
43 43 H 1.08996 * 109.70246 * 65.22612 * 18 17 16
44 44 H 1.07996 * 125.96518 * 359.97438 * 23 22 20
45 45 H 1.08996 * 109.71368 * 104.00554 * 27 26 25
46 46 H 1.08998 * 109.71342 * 224.60814 * 27 26 25
47 47 H 1.08995 * 109.53182 * 168.24198 * 28 27 26
48 48 H 1.08999 * 109.52641 * 288.45178 * 28 27 26
49 49 H 1.09003 * 109.46224 * 50.78413 * 29 28 27
50 50 H 1.09002 * 109.45966 * 170.75815 * 29 28 27
51 51 H 1.09006 * 109.57524 * 42.74994 * 30 25 24
52 52 H 1.08999 * 109.68569 * 282.42872 * 30 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1491 -0.0075 -2.3757
6 1 1.8919 1.0402 -2.4243
7 6 2.6112 -0.6620 -3.5093
8 7 2.9233 -1.9394 -3.4504
9 14 2.7890 0.2697 -5.1185
10 1 4.1512 0.8547 -5.2040
11 1 2.5781 -0.6617 -6.2558
12 1 1.7789 1.3568 -5.1752
13 6 2.0400 -0.7213 1.2493
14 1 1.6454 -0.2326 2.1400
15 6 1.5832 -2.1832 1.2206
16 6 2.2139 -2.9305 2.4019
17 6 3.7387 -2.8954 2.2769
18 6 4.2168 -1.4406 2.3156
19 7 3.5085 -0.6821 1.2756
20 6 4.1927 0.0356 0.3629
21 8 3.5951 0.7276 -0.4388
22 6 5.6658 -0.0183 0.3362
23 6 6.5197 -0.2353 1.4431
24 7 7.7529 -0.2172 1.0131
25 7 7.7477 0.0178 -0.3633
26 6 6.4696 0.1386 -0.7676
27 6 6.0431 0.3993 -2.1904
28 6 7.2683 0.8841 -2.9769
29 6 8.4461 -0.0549 -2.6996
30 6 8.9115 0.1212 -1.2502
31 1 -0.3634 0.4067 0.9438
32 1 -0.3634 0.6139 -0.8241
33 1 -0.3634 -1.0206 -0.1196
34 1 2.2489 -1.6318 -1.1526
35 1 3.2466 -2.3966 -4.2425
36 1 0.4967 -2.2265 1.2966
37 1 1.9017 -2.6457 0.2864
38 1 1.8730 -3.9659 2.3994
39 1 1.9149 -2.4521 3.3346
40 1 4.0369 -3.3514 1.3327
41 1 4.1845 -3.4470 3.1046
42 1 5.2900 -1.4035 2.1280
43 1 4.0018 -1.0090 3.2931
44 1 6.2065 -0.3916 2.4648
45 1 5.6615 -0.5202 -2.6342
46 1 5.2677 1.1651 -2.2074
47 1 7.0420 0.8798 -4.0430
48 1 7.5264 1.8952 -2.6622
49 1 8.1329 -1.0869 -2.8578
50 1 9.2672 0.1831 -3.3757
51 1 9.6311 -0.6588 -1.0011
52 1 9.3777 1.0994 -1.1318
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001566534587.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:13:24
Heat of formation + Delta-G solvation = 77.729094 kcal
Electronic energy + Delta-G solvation = -33937.557831 eV
Core-core repulsion = 29939.800299 eV
Total energy + Delta-G solvation = -3997.757531 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-42.69904 -41.05437 -37.93978 -37.62978 -36.65786 -34.18479 -33.55639 -33.19149
-31.52941 -31.11446 -29.68914 -29.37463 -26.26937 -25.67630 -25.30671 -24.65350
-23.47281 -22.98739 -21.52956 -21.40840 -20.06472 -19.43031 -18.95401 -17.90763
-16.90906 -16.81967 -16.50350 -16.22705 -16.00348 -15.68881 -15.58093 -15.36626
-15.27937 -15.03371 -14.74348 -14.65100 -14.49602 -14.26198 -13.93935 -13.68014
-13.51024 -13.37515 -13.04611 -12.97725 -12.87918 -12.73828 -12.58055 -12.35731
-12.21424 -12.09660 -12.02871 -11.96087 -11.83322 -11.64651 -11.60873 -11.42436
-11.25463 -11.14623 -10.74188 -10.21475 -9.59584 -9.45838 -9.16444 -8.51914
-7.67105 -4.85075 0.68963 1.31551 1.42669 1.45304 1.46661 1.53550
2.27958 2.71733 2.80487 3.39219 3.56253 3.66389 3.72694 3.75615
3.84774 3.95699 4.05383 4.08685 4.16626 4.26152 4.30106 4.33242
4.36112 4.41714 4.45468 4.50670 4.65379 4.67754 4.73955 4.78344
4.80134 4.89937 4.91987 4.97693 5.00793 5.05647 5.09910 5.14736
5.17563 5.19908 5.22077 5.32276 5.35637 5.48549 5.55028 5.62726
5.69231 5.75816 5.95339 6.09603 6.54341 6.61780 6.89124 7.60690
7.83750 8.39740 8.65585 9.57354
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.008239 B = 0.006843 C = 0.004200
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3397.650372 B = 4090.654800 C = 6664.488297
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.163 3.837
3 H 0.061 0.939
4 N -0.703 5.703
5 C -0.149 4.149
6 H 0.048 0.952
7 C -0.079 4.079
8 N -0.975 5.975
9 Si 0.935 3.065
10 H -0.287 1.287
11 H -0.306 1.306
12 H -0.286 1.286
13 C 0.152 3.848
14 H 0.090 0.910
15 C -0.125 4.125
16 C -0.109 4.109
17 C -0.131 4.131
18 C 0.083 3.917
19 N -0.607 5.607
20 C 0.574 3.426
21 O -0.513 6.513
22 C -0.303 4.303
23 C 0.069 3.931
24 N -0.313 5.313
25 N -0.362 5.362
26 C 0.145 3.855
27 C -0.052 4.052
28 C -0.123 4.123
29 C -0.129 4.129
30 C 0.125 3.875
31 H 0.068 0.932
32 H 0.027 0.973
33 H 0.043 0.957
34 H 0.367 0.633
35 H 0.237 0.763
36 H 0.078 0.922
37 H 0.033 0.967
38 H 0.066 0.934
39 H 0.085 0.915
40 H 0.032 0.968
41 H 0.100 0.900
42 H 0.102 0.898
43 H 0.095 0.905
44 H 0.230 0.770
45 H 0.061 0.939
46 H 0.075 0.925
47 H 0.077 0.923
48 H 0.080 0.920
49 H 0.061 0.939
50 H 0.130 0.870
51 H 0.112 0.888
52 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.919 1.122 13.835 17.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.054 3.946
3 H 0.079 0.921
4 N -0.343 5.343
5 C -0.282 4.282
6 H 0.066 0.934
7 C -0.269 4.269
8 N -0.631 5.631
9 Si 0.768 3.232
10 H -0.215 1.215
11 H -0.233 1.233
12 H -0.213 1.213
13 C 0.048 3.952
14 H 0.108 0.892
15 C -0.164 4.164
16 C -0.147 4.147
17 C -0.169 4.169
18 C -0.039 4.039
19 N -0.341 5.341
20 C 0.362 3.638
21 O -0.388 6.388
22 C -0.318 4.318
23 C -0.116 4.116
24 N -0.133 5.133
25 N -0.144 5.144
26 C 0.013 3.987
27 C -0.091 4.091
28 C -0.161 4.161
29 C -0.167 4.167
30 C 0.006 3.994
31 H 0.087 0.913
32 H 0.047 0.953
33 H 0.062 0.938
34 H 0.200 0.800
35 H 0.046 0.954
36 H 0.096 0.904
37 H 0.052 0.948
38 H 0.085 0.915
39 H 0.104 0.896
40 H 0.051 0.949
41 H 0.118 0.882
42 H 0.120 0.880
43 H 0.113 0.887
44 H 0.245 0.755
45 H 0.080 0.920
46 H 0.093 0.907
47 H 0.095 0.905
48 H 0.099 0.901
49 H 0.079 0.921
50 H 0.148 0.852
51 H 0.130 0.870
52 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 10.994 1.585 13.541 17.514
hybrid contribution -1.044 -0.093 -1.865 2.140
sum 9.949 1.492 11.676 15.413
Atomic orbital electron populations
1.22422 0.98699 1.00480 1.00251 1.20798 0.90982 0.97101 0.85674
0.92121 1.42426 1.77179 1.08950 1.05717 1.19126 1.29289 0.92248
0.87524 0.93391 1.24915 1.05973 0.96560 0.99450 1.69790 1.55998
1.09506 1.27773 0.85647 0.77871 0.77456 0.82187 1.21471 1.23344
1.21260 1.21481 0.79265 0.96213 0.98211 0.89220 1.21949 1.00767
0.95029 0.98645 1.21533 0.94802 1.00433 0.97896 1.21882 0.96704
0.96484 1.01815 1.22560 0.98615 0.91466 0.91284 1.47706 1.05956
1.49229 1.31239 1.17478 0.85487 0.80660 0.80212 1.90898 1.68421
1.40984 1.38510 1.20172 0.94701 1.22690 0.94201 1.24757 0.88640
0.97786 1.00448 1.76933 1.21779 1.25053 0.89484 1.48797 1.05464
1.53914 1.06185 1.21386 0.85160 0.95573 0.96571 1.20305 0.98802
1.02153 0.87827 1.21716 0.93598 1.00047 1.00721 1.21980 0.99644
1.00198 0.94884 1.22238 0.84711 1.05332 0.87095 0.91281 0.95342
0.93834 0.80007 0.95401 0.90356 0.94829 0.91480 0.89613 0.94864
0.88209 0.88050 0.88652 0.75456 0.92013 0.90667 0.90454 0.90130
0.92057 0.85157 0.87023 0.87565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.87 9.02 71.98 0.65 -5.22 16
2 C 0.16 6.83 1.89 44.99 0.08 6.91 16
3 H 0.06 2.89 5.92 -5.19 -0.03 2.86 16
4 N -0.70 -36.23 3.46 -322.94 -1.12 -37.35 16
5 C -0.15 -8.61 8.04 84.03 0.68 -7.93 16
6 H 0.05 2.89 7.83 -2.91 -0.02 2.86 16
7 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16
8 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16
9 Si 0.93 48.71 29.55 68.60 2.03 50.74 16
10 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16
11 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16
12 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16
13 C 0.15 4.99 2.73 44.98 0.12 5.11 16
14 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16
15 C -0.13 -3.85 4.84 30.78 0.15 -3.70 16
16 C -0.11 -2.44 5.89 30.73 0.18 -2.26 16
17 C -0.13 -2.99 6.08 30.67 0.19 -2.80 16
18 C 0.08 1.94 5.63 86.36 0.49 2.43 16
19 N -0.61 -20.15 2.97 -798.89 -2.37 -22.52 16
20 C 0.57 23.49 7.04 86.67 0.61 24.10 16
21 O -0.51 -25.09 8.82 -4.05 -0.04 -25.12 16
22 C -0.30 -11.24 5.71 -20.25 -0.12 -11.36 16
23 C 0.07 2.02 9.76 85.67 0.84 2.85 16
24 N -0.31 -9.47 12.54 -56.07 -0.70 -10.17 16
25 N -0.36 -11.03 4.01 -332.32 -1.33 -12.36 16
26 C 0.14 5.38 6.64 41.98 0.28 5.66 16
27 C -0.05 -2.06 5.79 30.03 0.17 -1.89 16
28 C -0.12 -3.47 5.98 30.80 0.18 -3.29 16
29 C -0.13 -2.72 5.93 30.73 0.18 -2.53 16
30 C 0.13 2.60 7.27 86.42 0.63 3.23 16
31 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16
32 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16
33 H 0.04 1.61 6.99 -2.39 -0.02 1.59 16
34 H 0.37 20.51 5.85 -92.71 -0.54 19.97 16
35 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16
36 H 0.08 2.23 6.96 -2.38 -0.02 2.21 16
37 H 0.03 1.33 6.23 -2.39 -0.01 1.32 16
38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
40 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16
41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
42 H 0.10 2.36 3.11 -2.38 -0.01 2.35 16
43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16
44 H 0.23 4.67 5.92 -2.91 -0.02 4.65 16
45 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16
46 H 0.07 3.48 7.29 -2.39 -0.02 3.47 16
47 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
48 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16
49 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16
50 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16
51 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16
52 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16
Total: -1.00 -76.71 385.96 2.90 -73.81
By element:
Atomic # 1 Polarization: 38.21 SS G_CDS: 0.37 Total: 38.59 kcal
Atomic # 6 Polarization: -0.72 SS G_CDS: 5.78 Total: 5.06 kcal
Atomic # 7 Polarization: -137.83 SS G_CDS: -5.24 Total: -143.06 kcal
Atomic # 8 Polarization: -25.09 SS G_CDS: -0.04 Total: -25.12 kcal
Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal
Total: -76.71 2.90 -73.81 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566534587.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 151.534 kcal
(2) G-P(sol) polarization free energy of solvation -76.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds