Wall clock time and date at job start Wed Apr 1 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47101 * 2 1 4 4 N 1.46498 * 109.46945 * 120.00755 * 2 1 3 5 5 C 1.36937 * 119.99722 * 274.99522 * 4 2 1 6 6 H 1.08001 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99763 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00483 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46870 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47140 * 119.99678 * 9 7 5 12 12 H 1.48495 * 109.47208 * 240.00101 * 9 7 5 13 13 C 1.53001 * 109.46832 * 240.00576 * 2 1 3 14 14 H 1.08994 * 109.70596 * 55.89834 * 13 2 1 15 15 C 1.52762 * 109.51387 * 295.77596 * 13 2 1 16 16 C 1.53038 * 109.38710 * 185.70848 * 15 13 2 17 17 C 1.53043 * 109.53611 * 61.23896 * 16 15 13 18 18 C 1.53185 * 109.31504 * 298.63518 * 17 16 15 19 19 N 1.46931 * 109.58369 * 176.24963 * 13 2 1 20 20 C 1.34779 * 120.63159 * 353.42050 * 19 13 2 21 21 O 1.21604 * 119.99858 * 4.44591 * 20 19 13 22 22 C 1.47430 * 119.99871 * 184.43982 * 20 19 13 23 23 C 1.41468 * 126.48814 * 33.96923 * 22 20 19 24 24 N 1.30602 * 108.07518 * 179.97438 * 23 22 20 25 25 N 1.39457 * 108.92304 * 0.08155 * 24 23 22 26 26 C 1.34776 * 108.33959 * 359.87481 * 25 24 23 27 27 C 1.50808 * 124.63111 * 180.02562 * 26 25 24 28 28 C 1.53450 * 108.18879 * 344.41262 * 27 26 25 29 29 C 1.53161 * 109.11563 * 48.36770 * 28 27 26 30 30 C 1.46688 * 127.36512 * 180.22056 * 25 24 23 31 31 H 1.09002 * 109.47623 * 186.27437 * 1 2 3 32 32 H 1.08997 * 109.47287 * 306.27489 * 1 2 3 33 33 H 1.09008 * 109.47203 * 66.27540 * 1 2 3 34 34 H 0.97003 * 120.00185 * 95.00678 * 4 2 1 35 35 H 0.97001 * 120.00233 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.55703 * 65.67131 * 15 13 2 37 37 H 1.09001 * 109.38718 * 305.63990 * 15 13 2 38 38 H 1.09000 * 109.45904 * 301.22402 * 16 15 13 39 39 H 1.08997 * 109.45888 * 181.26124 * 16 15 13 40 40 H 1.08997 * 109.49332 * 178.67873 * 17 16 15 41 41 H 1.09002 * 109.51831 * 58.60322 * 17 16 15 42 42 H 1.08993 * 109.58637 * 294.84923 * 18 17 16 43 43 H 1.08998 * 109.58631 * 174.42272 * 18 17 16 44 44 H 1.08006 * 125.96297 * 359.97438 * 23 22 20 45 45 H 1.09001 * 109.71736 * 224.74037 * 27 26 25 46 46 H 1.08995 * 109.75272 * 104.10934 * 27 26 25 47 47 H 1.08996 * 109.53485 * 288.47268 * 28 27 26 48 48 H 1.09008 * 109.52560 * 168.25298 * 28 27 26 49 49 H 1.09005 * 109.45931 * 170.73768 * 29 28 27 50 50 H 1.09005 * 109.46121 * 50.78613 * 29 28 27 51 51 H 1.08993 * 109.57370 * 42.53326 * 30 25 24 52 52 H 1.09000 * 109.57452 * 282.27921 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6908 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8919 1.0401 2.4244 7 6 2.6122 -0.6621 3.5089 8 7 2.9262 -1.9390 3.4495 9 14 2.7901 0.2694 5.1183 10 1 2.3741 1.6814 4.9215 11 1 1.9298 -0.3600 6.1522 12 1 4.2070 0.2274 5.5606 13 6 2.0399 -0.7211 -1.2493 14 1 1.6200 -0.2543 -2.1403 15 6 1.6196 -2.1889 -1.1986 16 6 2.2498 -2.9388 -2.3745 17 6 3.7749 -2.8673 -2.2689 18 6 4.2193 -1.4028 -2.3353 19 7 3.5064 -0.6447 -1.2980 20 6 4.1852 0.1021 -0.4047 21 8 3.5916 0.6556 0.5009 22 6 5.6473 0.2478 -0.5252 23 6 6.3918 0.2938 -1.7273 24 7 7.6533 0.4302 -1.4176 25 7 7.7758 0.4754 -0.0291 26 6 6.5451 0.3649 0.5090 27 6 6.2529 0.3713 1.9885 28 6 7.5696 0.1277 2.7378 29 6 8.6468 1.0598 2.1751 30 6 9.0088 0.6245 0.7514 31 1 -0.3634 -1.0215 0.1123 32 1 -0.3634 0.6080 0.8285 33 1 -0.3634 0.4135 -0.9409 34 1 2.2490 -1.6319 1.1524 35 1 3.2495 -2.3963 4.2415 36 1 0.5338 -2.2599 -1.2616 37 1 1.9593 -2.6303 -0.2616 38 1 1.9288 -2.4817 -3.3105 39 1 1.9326 -3.9813 -2.3522 40 1 4.2229 -3.4213 -3.0937 41 1 4.0951 -3.3021 -1.3220 42 1 3.9806 -0.9927 -3.3166 43 1 5.2934 -1.3387 -2.1616 44 1 5.9876 0.2276 -2.7266 45 1 5.5424 -0.4204 2.2264 46 1 5.8381 1.3368 2.2779 47 1 7.8787 -0.9089 2.6041 48 1 7.4283 0.3330 3.7990 49 1 9.5343 1.0118 2.8061 50 1 8.2692 2.0822 2.1573 51 1 9.6444 1.3797 0.2892 52 1 9.5378 -0.3279 0.7839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566534589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:30 Heat of formation + Delta-G solvation = 90.917503 kcal Electronic energy + Delta-G solvation = -33798.284455 eV Core-core repulsion = 29801.098816 eV Total energy + Delta-G solvation = -3997.185639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.43315 -39.68967 -36.57061 -36.43427 -35.04755 -32.44969 -32.16143 -31.87712 -30.25412 -29.53692 -28.25649 -27.91293 -24.89157 -24.18851 -23.78857 -23.18684 -22.17298 -21.75920 -20.31547 -19.96259 -18.79593 -18.10613 -16.93271 -16.60700 -15.76820 -15.27610 -15.11432 -14.63526 -14.60054 -14.38386 -14.17159 -13.98579 -13.86815 -13.80860 -13.53243 -13.38783 -13.07357 -12.79236 -12.57388 -12.29653 -12.07827 -12.01934 -11.77743 -11.66719 -11.28928 -11.10319 -11.02203 -10.97316 -10.82308 -10.70356 -10.63784 -10.55172 -10.44034 -10.38754 -10.21751 -9.97949 -9.65050 -9.29545 -9.02389 -8.68952 -8.17845 -8.00454 -7.71928 -6.45725 -5.43654 -2.64020 2.00100 2.53050 2.61340 3.55200 3.62022 3.63690 3.65268 4.15801 4.40404 4.64511 4.80050 4.82867 4.85789 5.00410 5.09701 5.16794 5.19654 5.22644 5.38113 5.44434 5.45566 5.58130 5.63776 5.65824 5.73593 5.78699 5.82669 5.83787 5.90097 5.93545 6.01933 6.04513 6.12143 6.20376 6.27459 6.31862 6.36952 6.39372 6.43122 6.53654 6.59396 6.62531 6.70011 6.72711 7.03452 7.10691 7.17193 7.21607 7.53459 7.86360 8.05294 8.26711 8.74320 9.29786 9.86167 10.44338 10.81554 11.80673 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.006623 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.849177 B = 4226.766984 C = 6819.459257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.078 0.922 4 N -0.699 5.699 5 C -0.159 4.159 6 H 0.063 0.937 7 C -0.032 4.032 8 N -0.948 5.948 9 Si 0.888 3.112 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.298 1.298 13 C 0.149 3.851 14 H 0.059 0.941 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.105 3.895 19 N -0.608 5.608 20 C 0.568 3.432 21 O -0.449 6.449 22 C -0.276 4.276 23 C 0.067 3.933 24 N -0.309 5.309 25 N -0.367 5.367 26 C 0.156 3.844 27 C -0.060 4.060 28 C -0.128 4.128 29 C -0.137 4.137 30 C 0.135 3.865 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.378 0.622 35 H 0.244 0.756 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.186 0.814 45 H 0.118 0.882 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 1.522 -11.587 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.064 3.936 3 H 0.095 0.905 4 N -0.340 5.340 5 C -0.291 4.291 6 H 0.081 0.919 7 C -0.225 4.225 8 N -0.602 5.602 9 Si 0.722 3.278 10 H -0.211 1.211 11 H -0.229 1.229 12 H -0.226 1.226 13 C 0.046 3.954 14 H 0.076 0.924 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.173 4.173 18 C -0.019 4.019 19 N -0.344 5.344 20 C 0.354 3.646 21 O -0.319 6.319 22 C -0.290 4.290 23 C -0.120 4.120 24 N -0.129 5.129 25 N -0.149 5.149 26 C 0.026 3.974 27 C -0.099 4.099 28 C -0.165 4.165 29 C -0.176 4.176 30 C 0.014 3.986 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.213 0.787 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.136 0.864 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.094 0.906 51 H 0.108 0.892 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.704 2.147 -11.325 15.067 hybrid contribution -0.455 -0.163 1.067 1.172 sum 9.249 1.983 -10.257 13.953 Atomic orbital electron populations 1.22590 1.00327 1.00868 0.99216 1.20609 0.89934 0.97615 0.85485 0.90459 1.42412 1.76957 1.09552 1.05076 1.19113 1.30767 0.93041 0.86226 0.91891 1.24463 1.04913 0.95947 0.97134 1.69656 1.54412 1.08427 1.27658 0.86324 0.76962 0.78878 0.85597 1.21095 1.22892 1.22643 1.21433 0.79106 0.95729 0.99166 0.92350 1.21916 1.00191 0.95809 0.99215 1.21494 0.95186 1.00114 0.98539 1.21905 0.96498 0.96635 1.02267 1.21858 0.97791 0.91305 0.90928 1.47620 1.05985 1.48560 1.32254 1.17236 0.84700 0.80963 0.81659 1.91093 1.66921 1.44751 1.29119 1.20091 0.95353 1.21632 0.91923 1.24094 0.90068 0.98864 0.98970 1.76902 1.19764 1.25851 0.90341 1.48437 1.06065 1.56311 1.04108 1.21491 0.84380 0.95028 0.96471 1.20579 0.97879 1.06130 0.85280 1.21722 0.94410 0.99532 1.00865 1.21993 1.00711 1.01012 0.93866 1.21795 0.83574 1.02729 0.90497 0.93580 0.93040 0.94985 0.78693 0.94555 0.91302 0.90281 0.92535 0.92383 0.91769 0.91332 0.92553 0.89426 0.79749 0.86407 0.88655 0.91373 0.90139 0.89259 0.90598 0.89232 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.07 37.16 0.34 -2.80 16 2 C 0.17 3.54 1.88 -67.93 -0.13 3.41 16 3 H 0.08 1.75 6.07 -51.94 -0.32 1.44 16 4 N -0.70 -17.10 3.48 -53.43 -0.19 -17.29 16 5 C -0.16 -4.38 7.87 -15.06 -0.12 -4.50 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.03 -0.92 5.50 -17.43 -0.10 -1.02 16 8 N -0.95 -28.27 13.06 55.49 0.72 -27.54 16 9 Si 0.89 22.85 29.55 -169.99 -5.02 17.83 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 12 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 13 C 0.15 2.51 2.72 -67.82 -0.18 2.33 16 14 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.13 -2.10 4.83 -26.83 -0.13 -2.23 16 16 C -0.12 -1.47 5.89 -26.69 -0.16 -1.63 16 17 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 18 C 0.11 1.39 5.33 -3.71 -0.02 1.37 16 19 N -0.61 -10.18 2.97 -166.73 -0.50 -10.67 16 20 C 0.57 11.13 7.20 -12.52 -0.09 11.04 16 21 O -0.45 -10.37 9.09 5.27 0.05 -10.32 16 22 C -0.28 -4.89 5.42 -105.21 -0.57 -5.46 16 23 C 0.07 1.00 9.58 -16.85 -0.16 0.84 16 24 N -0.31 -4.86 12.54 30.93 0.39 -4.47 16 25 N -0.37 -5.58 4.01 -56.36 -0.23 -5.80 16 26 C 0.16 2.71 6.65 -81.53 -0.54 2.17 16 27 C -0.06 -1.06 5.62 -27.60 -0.16 -1.22 16 28 C -0.13 -1.72 5.98 -26.41 -0.16 -1.88 16 29 C -0.14 -1.42 5.93 -26.54 -0.16 -1.58 16 30 C 0.13 1.49 7.26 -3.83 -0.03 1.47 16 31 H 0.05 0.85 7.00 -51.93 -0.36 0.49 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.38 9.94 5.73 -40.82 -0.23 9.71 16 35 H 0.24 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.07 1.03 6.98 -51.93 -0.36 0.67 16 37 H 0.08 1.53 6.11 -51.93 -0.32 1.22 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.16 4.33 -51.93 -0.22 0.94 16 44 H 0.19 2.19 6.79 -52.48 -0.36 1.84 16 45 H 0.12 2.60 8.14 -51.93 -0.42 2.18 16 46 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 47 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 48 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 51 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 52 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -32.32 388.21 -9.92 -42.25 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.48 Total: 11.74 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.52 Total: -1.57 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.20 Total: -65.77 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.05 Total: -10.32 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.32 -9.92 -42.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.164 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds