Wall clock time and date at job start Wed Apr 1 2020 05:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47101 * 2 1 4 4 N 1.46498 * 109.46945 * 120.00755 * 2 1 3 5 5 C 1.36937 * 119.99722 * 274.99522 * 4 2 1 6 6 H 1.08001 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99763 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00483 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46870 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47140 * 119.99678 * 9 7 5 12 12 H 1.48495 * 109.47208 * 240.00101 * 9 7 5 13 13 C 1.53001 * 109.46832 * 240.00576 * 2 1 3 14 14 H 1.08994 * 109.70596 * 55.89834 * 13 2 1 15 15 C 1.52762 * 109.51387 * 295.77596 * 13 2 1 16 16 C 1.53038 * 109.38710 * 185.70848 * 15 13 2 17 17 C 1.53043 * 109.53611 * 61.23896 * 16 15 13 18 18 C 1.53185 * 109.31504 * 298.63518 * 17 16 15 19 19 N 1.46931 * 109.58369 * 176.24963 * 13 2 1 20 20 C 1.34779 * 120.63159 * 353.42050 * 19 13 2 21 21 O 1.21604 * 119.99858 * 4.44591 * 20 19 13 22 22 C 1.47430 * 119.99871 * 184.43982 * 20 19 13 23 23 C 1.41468 * 126.48814 * 33.96923 * 22 20 19 24 24 N 1.30602 * 108.07518 * 179.97438 * 23 22 20 25 25 N 1.39457 * 108.92304 * 0.08155 * 24 23 22 26 26 C 1.34776 * 108.33959 * 359.87481 * 25 24 23 27 27 C 1.50808 * 124.63111 * 180.02562 * 26 25 24 28 28 C 1.53450 * 108.18879 * 344.41262 * 27 26 25 29 29 C 1.53161 * 109.11563 * 48.36770 * 28 27 26 30 30 C 1.46688 * 127.36512 * 180.22056 * 25 24 23 31 31 H 1.09002 * 109.47623 * 186.27437 * 1 2 3 32 32 H 1.08997 * 109.47287 * 306.27489 * 1 2 3 33 33 H 1.09008 * 109.47203 * 66.27540 * 1 2 3 34 34 H 0.97003 * 120.00185 * 95.00678 * 4 2 1 35 35 H 0.97001 * 120.00233 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.55703 * 65.67131 * 15 13 2 37 37 H 1.09001 * 109.38718 * 305.63990 * 15 13 2 38 38 H 1.09000 * 109.45904 * 301.22402 * 16 15 13 39 39 H 1.08997 * 109.45888 * 181.26124 * 16 15 13 40 40 H 1.08997 * 109.49332 * 178.67873 * 17 16 15 41 41 H 1.09002 * 109.51831 * 58.60322 * 17 16 15 42 42 H 1.08993 * 109.58637 * 294.84923 * 18 17 16 43 43 H 1.08998 * 109.58631 * 174.42272 * 18 17 16 44 44 H 1.08006 * 125.96297 * 359.97438 * 23 22 20 45 45 H 1.09001 * 109.71736 * 224.74037 * 27 26 25 46 46 H 1.08995 * 109.75272 * 104.10934 * 27 26 25 47 47 H 1.08996 * 109.53485 * 288.47268 * 28 27 26 48 48 H 1.09008 * 109.52560 * 168.25298 * 28 27 26 49 49 H 1.09005 * 109.45931 * 170.73768 * 29 28 27 50 50 H 1.09005 * 109.46121 * 50.78613 * 29 28 27 51 51 H 1.08993 * 109.57370 * 42.53326 * 30 25 24 52 52 H 1.09000 * 109.57452 * 282.27921 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6908 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8919 1.0401 2.4244 7 6 2.6122 -0.6621 3.5089 8 7 2.9262 -1.9390 3.4495 9 14 2.7901 0.2694 5.1183 10 1 2.3741 1.6814 4.9215 11 1 1.9298 -0.3600 6.1522 12 1 4.2070 0.2274 5.5606 13 6 2.0399 -0.7211 -1.2493 14 1 1.6200 -0.2543 -2.1403 15 6 1.6196 -2.1889 -1.1986 16 6 2.2498 -2.9388 -2.3745 17 6 3.7749 -2.8673 -2.2689 18 6 4.2193 -1.4028 -2.3353 19 7 3.5064 -0.6447 -1.2980 20 6 4.1852 0.1021 -0.4047 21 8 3.5916 0.6556 0.5009 22 6 5.6473 0.2478 -0.5252 23 6 6.3918 0.2938 -1.7273 24 7 7.6533 0.4302 -1.4176 25 7 7.7758 0.4754 -0.0291 26 6 6.5451 0.3649 0.5090 27 6 6.2529 0.3713 1.9885 28 6 7.5696 0.1277 2.7378 29 6 8.6468 1.0598 2.1751 30 6 9.0088 0.6245 0.7514 31 1 -0.3634 -1.0215 0.1123 32 1 -0.3634 0.6080 0.8285 33 1 -0.3634 0.4135 -0.9409 34 1 2.2490 -1.6319 1.1524 35 1 3.2495 -2.3963 4.2415 36 1 0.5338 -2.2599 -1.2616 37 1 1.9593 -2.6303 -0.2616 38 1 1.9288 -2.4817 -3.3105 39 1 1.9326 -3.9813 -2.3522 40 1 4.2229 -3.4213 -3.0937 41 1 4.0951 -3.3021 -1.3220 42 1 3.9806 -0.9927 -3.3166 43 1 5.2934 -1.3387 -2.1616 44 1 5.9876 0.2276 -2.7266 45 1 5.5424 -0.4204 2.2264 46 1 5.8381 1.3368 2.2779 47 1 7.8787 -0.9089 2.6041 48 1 7.4283 0.3330 3.7990 49 1 9.5343 1.0118 2.8061 50 1 8.2692 2.0822 2.1573 51 1 9.6444 1.3797 0.2892 52 1 9.5378 -0.3279 0.7839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566534589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:29 Heat of formation + Delta-G solvation = 70.881071 kcal Electronic energy + Delta-G solvation = -33799.153300 eV Core-core repulsion = 29801.098816 eV Total energy + Delta-G solvation = -3998.054484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.67267 -41.07249 -37.94511 -37.59116 -36.68149 -34.13911 -33.57711 -33.20478 -31.45481 -31.13819 -29.68369 -29.39097 -26.23829 -25.63098 -25.29181 -24.63181 -23.46472 -22.95978 -21.52960 -21.37543 -20.07330 -19.42495 -18.94268 -17.92408 -16.97240 -16.72690 -16.41230 -16.17612 -15.93538 -15.72040 -15.53011 -15.40785 -15.28903 -15.04464 -14.85370 -14.64973 -14.47227 -14.30680 -13.94691 -13.71441 -13.51283 -13.38657 -13.09222 -12.96502 -12.88963 -12.79209 -12.56668 -12.32168 -12.21358 -12.06356 -12.04193 -11.97030 -11.87262 -11.65191 -11.61790 -11.44545 -11.29076 -11.14784 -10.73621 -10.21516 -9.64675 -9.48948 -9.13740 -8.45935 -7.66416 -4.83363 0.68462 1.34614 1.43003 1.44067 1.46374 1.54655 2.28985 2.72275 2.76375 3.39433 3.55261 3.66651 3.72163 3.74920 3.83748 4.01592 4.03928 4.06544 4.16914 4.26574 4.32091 4.32806 4.36105 4.42966 4.44907 4.51300 4.65307 4.68754 4.73253 4.77373 4.79179 4.90900 4.91398 4.97602 5.00936 5.03979 5.10052 5.13591 5.16532 5.18167 5.21639 5.32042 5.35642 5.49054 5.54273 5.63497 5.67894 5.75782 5.94847 6.09856 6.55300 6.63246 6.88909 7.61461 7.84926 8.40843 8.66332 9.58578 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.006623 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.849177 B = 4226.766984 C = 6819.459257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.169 3.831 3 H 0.053 0.947 4 N -0.699 5.699 5 C -0.140 4.140 6 H 0.048 0.952 7 C -0.086 4.086 8 N -0.977 5.977 9 Si 0.938 3.062 10 H -0.282 1.282 11 H -0.306 1.306 12 H -0.296 1.296 13 C 0.152 3.848 14 H 0.092 0.908 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.132 4.132 18 C 0.101 3.899 19 N -0.607 5.607 20 C 0.561 3.439 21 O -0.502 6.502 22 C -0.299 4.299 23 C 0.079 3.921 24 N -0.313 5.313 25 N -0.361 5.361 26 C 0.139 3.861 27 C -0.051 4.051 28 C -0.123 4.123 29 C -0.126 4.126 30 C 0.124 3.876 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.367 0.633 35 H 0.237 0.763 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.032 0.968 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.219 0.781 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.129 0.871 50 H 0.071 0.929 51 H 0.114 0.886 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.114 1.729 -14.737 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.071 0.929 4 N -0.338 5.338 5 C -0.274 4.274 6 H 0.066 0.934 7 C -0.275 4.275 8 N -0.633 5.633 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.235 1.235 12 H -0.224 1.224 13 C 0.049 3.951 14 H 0.110 0.890 15 C -0.165 4.165 16 C -0.146 4.146 17 C -0.170 4.170 18 C -0.021 4.021 19 N -0.342 5.342 20 C 0.348 3.652 21 O -0.375 6.375 22 C -0.314 4.314 23 C -0.107 4.107 24 N -0.132 5.132 25 N -0.143 5.143 26 C 0.007 3.993 27 C -0.090 4.090 28 C -0.161 4.161 29 C -0.164 4.164 30 C 0.005 3.995 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.051 0.949 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.235 0.765 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.147 0.853 50 H 0.090 0.910 51 H 0.132 0.868 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.160 2.365 -14.538 18.479 hybrid contribution -0.916 -0.192 1.946 2.159 sum 10.244 2.173 -12.592 16.378 Atomic orbital electron populations 1.22420 0.98554 1.00609 1.00334 1.20693 0.90981 0.96489 0.85799 0.92950 1.42458 1.76829 1.08912 1.05642 1.19147 1.28573 0.92193 0.87438 0.93445 1.24936 1.06302 0.96700 0.99585 1.69791 1.56338 1.09551 1.27668 0.85506 0.76729 0.77932 0.82622 1.20752 1.23462 1.22385 1.21408 0.79407 0.96168 0.98158 0.89032 1.21832 1.00922 0.95104 0.98677 1.21471 0.94665 1.00416 0.98026 1.21894 0.96876 0.96472 1.01740 1.22147 0.97456 0.91242 0.91300 1.47725 1.06121 1.47967 1.32367 1.17640 0.85591 0.80570 0.81408 1.91053 1.68056 1.47160 1.31280 1.20176 0.94712 1.22948 0.93553 1.24475 0.89292 0.97620 0.99354 1.76869 1.19967 1.25856 0.90555 1.48785 1.06330 1.55072 1.04111 1.21421 0.85770 0.96004 0.96076 1.20276 0.98938 1.02848 0.86950 1.21701 0.93289 1.00619 1.00503 1.21971 1.00813 0.99520 0.94064 1.22240 0.82352 1.04593 0.90322 0.93697 0.95296 0.91181 0.79940 0.95428 0.90355 0.94816 0.89504 0.91484 0.88339 0.94939 0.88648 0.89537 0.76516 0.91974 0.90702 0.91308 0.90075 0.85276 0.90999 0.86769 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.07 71.98 0.65 -5.20 16 2 C 0.17 7.05 1.88 44.99 0.08 7.14 16 3 H 0.05 2.48 6.07 -2.54 -0.02 2.47 16 4 N -0.70 -36.15 3.48 -322.95 -1.12 -37.28 16 5 C -0.14 -8.18 7.87 84.03 0.66 -7.52 16 6 H 0.05 2.88 7.83 -2.91 -0.02 2.85 16 7 C -0.09 -5.17 5.50 84.86 0.47 -4.70 16 8 N -0.98 -61.71 13.06 21.65 0.28 -61.42 16 9 Si 0.94 49.46 29.55 68.60 2.03 51.48 16 10 H -0.28 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.31 -16.28 7.11 99.48 0.71 -15.57 16 12 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 13 C 0.15 4.95 2.72 44.83 0.12 5.08 16 14 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.13 -3.88 4.83 30.53 0.15 -3.74 16 16 C -0.11 -2.43 5.89 30.62 0.18 -2.25 16 17 C -0.13 -3.04 6.08 30.67 0.19 -2.86 16 18 C 0.10 2.38 5.33 86.36 0.46 2.84 16 19 N -0.61 -19.96 2.97 -799.67 -2.38 -22.34 16 20 C 0.56 22.73 7.20 86.66 0.62 23.36 16 21 O -0.50 -24.69 9.09 -4.04 -0.04 -24.73 16 22 C -0.30 -10.79 5.42 -20.25 -0.11 -10.90 16 23 C 0.08 2.24 9.58 85.67 0.82 3.06 16 24 N -0.31 -9.19 12.54 -56.07 -0.70 -9.90 16 25 N -0.36 -10.56 4.01 -332.23 -1.33 -11.89 16 26 C 0.14 4.96 6.65 41.96 0.28 5.24 16 27 C -0.05 -1.95 5.62 30.03 0.17 -1.78 16 28 C -0.12 -3.39 5.98 30.80 0.18 -3.21 16 29 C -0.13 -2.36 5.93 30.72 0.18 -2.18 16 30 C 0.12 2.43 7.26 86.42 0.63 3.06 16 31 H 0.04 1.64 7.00 -2.39 -0.02 1.63 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.37 20.56 5.73 -92.71 -0.53 20.03 16 35 H 0.24 14.76 8.31 -92.71 -0.77 13.98 16 36 H 0.08 2.22 6.98 -2.39 -0.02 2.20 16 37 H 0.03 1.35 6.11 -2.39 -0.01 1.33 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.09 2.09 4.33 -2.39 -0.01 2.08 16 44 H 0.22 4.41 6.79 -2.91 -0.02 4.39 16 45 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 48 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 49 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.07 1.44 8.12 -2.38 -0.02 1.42 16 51 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -77.57 388.21 2.86 -74.71 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: 0.39 Total: 35.93 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.74 Total: 5.44 kcal Atomic # 7 Polarization: -137.57 SS G_CDS: -5.26 Total: -142.83 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.48 kcal Total: -77.57 2.86 -74.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.591 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds