Wall clock time and date at job start Wed Apr 1 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47339 * 2 1 4 4 N 1.46496 * 109.47112 * 120.00653 * 2 1 3 5 5 C 1.34778 * 119.99794 * 274.99851 * 4 2 1 6 6 O 1.21284 * 119.99966 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00294 * 180.02562 * 5 4 2 8 8 N 1.46491 * 109.47409 * 179.97438 * 7 5 4 9 9 C 1.34953 * 126.03977 * 125.30638 * 8 7 5 10 10 C 1.35314 * 107.74843 * 180.14734 * 9 8 7 11 11 C 1.50694 * 126.03942 * 179.87610 * 10 9 8 12 12 C 1.53010 * 117.49709 * 170.96773 * 11 10 9 13 13 C 1.53001 * 117.49868 * 239.62723 * 11 10 9 14 14 C 1.39871 * 107.91840 * 359.60899 * 10 9 8 15 15 N 1.30840 * 108.20497 * 0.24307 * 14 10 9 16 16 C 1.53002 * 109.46946 * 240.00072 * 2 1 3 17 17 H 1.09002 * 109.49849 * 299.94315 * 16 2 1 18 18 C 1.53047 * 109.49461 * 60.00165 * 16 2 1 19 19 C 1.53045 * 109.53342 * 181.31564 * 18 16 2 20 20 C 1.53190 * 109.31291 * 298.63323 * 19 18 16 21 21 N 1.46920 * 108.77560 * 54.64058 * 20 19 18 22 22 C 1.36940 * 120.63335 * 126.40859 * 21 20 19 23 23 H 1.07999 * 119.99863 * 207.67270 * 22 21 20 24 24 C 1.38812 * 119.99936 * 27.67777 * 22 21 20 25 25 N 1.31625 * 119.99500 * 17.35278 * 24 22 21 26 26 Si 1.86799 * 119.99943 * 197.35524 * 24 22 21 27 27 H 1.48497 * 109.47061 * 60.00185 * 26 24 22 28 28 H 1.48504 * 109.46836 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47019 * 299.99536 * 26 24 22 30 30 C 1.46925 * 118.73838 * 306.38939 * 21 20 19 31 31 H 1.08995 * 109.47827 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46793 * 300.00081 * 1 2 3 33 33 H 1.09006 * 109.47422 * 59.99496 * 1 2 3 34 34 H 0.96999 * 120.00528 * 94.99510 * 4 2 1 35 35 H 1.08999 * 109.46966 * 59.99348 * 7 5 4 36 36 H 1.09001 * 109.46958 * 299.99827 * 7 5 4 37 37 H 1.07998 * 126.12411 * 0.02562 * 9 8 7 38 38 H 1.08998 * 115.55339 * 25.29742 * 11 10 9 39 39 H 1.08994 * 117.49421 * 214.99976 * 12 11 10 40 40 H 1.08996 * 117.49840 * 0.02562 * 12 11 10 41 41 H 1.09000 * 117.49775 * 359.97183 * 13 11 10 42 42 H 1.08994 * 117.50235 * 145.00057 * 13 11 10 43 43 H 1.08005 * 125.89812 * 180.21829 * 14 10 9 44 44 H 1.08995 * 109.45973 * 301.33527 * 18 16 2 45 45 H 1.08996 * 109.46024 * 61.31070 * 18 16 2 46 46 H 1.08991 * 109.49691 * 58.58912 * 19 18 16 47 47 H 1.09004 * 109.49441 * 178.65583 * 19 18 16 48 48 H 1.09000 * 109.58616 * 174.42589 * 20 19 18 49 49 H 1.08993 * 109.58961 * 294.85084 * 20 19 18 50 50 H 0.97001 * 119.98917 * 180.02562 * 25 24 22 51 51 H 1.09007 * 109.58886 * 293.82080 * 30 21 20 52 52 H 1.09000 * 109.58943 * 173.39799 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3571 6 8 1.8590 1.1584 2.4115 7 6 2.6499 -0.7288 3.5874 8 7 2.6997 0.2126 4.7087 9 6 2.1060 0.0491 5.9096 10 6 2.3884 1.1384 6.6611 11 6 1.9271 1.3843 8.0744 12 6 2.5305 2.5784 8.8168 13 6 1.0788 2.6309 8.3338 14 6 3.1894 1.9928 5.8964 15 7 3.3766 1.4389 4.7259 16 6 2.0399 -0.7213 -1.2493 17 1 1.6777 -1.7493 -1.2492 18 6 1.5301 -0.0001 -2.4992 19 6 2.0125 -0.7398 -3.7493 20 6 3.5441 -0.7368 -3.7803 21 7 4.0437 -1.2971 -2.5173 22 6 4.9326 -2.3388 -2.5193 23 1 4.9617 -3.0254 -1.6862 24 6 5.7963 -2.5120 -3.5921 25 7 6.0118 -1.5203 -4.4303 26 14 6.6526 -4.1526 -3.8462 27 1 5.6353 -5.2189 -4.0288 28 1 7.5144 -4.0794 -5.0534 29 1 7.4884 -4.4638 -2.6589 30 6 3.5718 -0.7182 -1.2520 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 2.2489 -1.6319 1.1525 35 1 3.6492 -1.1206 3.3978 36 1 1.9777 -1.5511 3.8324 37 1 1.5103 -0.7983 6.2153 38 1 1.7008 0.4915 8.6572 39 1 2.7011 2.4711 9.8880 40 1 3.2608 3.1863 8.2828 41 1 0.8549 3.2734 7.4822 42 1 0.2946 2.5583 9.0872 43 1 3.5847 2.9455 6.2166 44 1 0.4404 0.0206 -2.4874 45 1 1.9126 1.0204 -2.5111 46 1 1.6510 -1.7677 -3.7259 47 1 1.6292 -0.2394 -4.6386 48 1 3.8938 -1.3458 -4.6138 49 1 3.9053 0.2851 -3.8949 50 1 6.6151 -1.6416 -5.1801 51 1 3.9353 0.3054 -1.1604 52 1 3.9399 -1.3148 -0.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566961943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:15 Heat of formation + Delta-G solvation = 63.821955 kcal Electronic energy + Delta-G solvation = -30340.179691 eV Core-core repulsion = 26341.819101 eV Total energy + Delta-G solvation = -3998.360590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.26489 -40.93033 -39.40524 -37.82339 -36.71334 -34.72806 -34.13840 -32.59206 -32.13052 -31.03376 -29.97339 -28.35568 -27.10074 -24.95750 -23.78222 -23.63396 -23.22060 -22.73204 -21.71643 -21.49132 -20.85140 -20.32163 -18.70920 -18.20832 -17.98644 -17.03908 -16.80031 -16.63591 -16.10995 -15.91718 -15.61288 -15.44942 -15.22558 -14.99783 -14.93480 -14.69703 -14.43213 -14.16782 -14.06222 -13.80796 -13.68244 -13.38478 -13.18167 -13.01787 -12.84638 -12.75197 -12.60252 -12.31321 -12.28131 -12.22714 -11.98404 -11.78237 -11.68094 -11.53149 -11.44942 -11.30126 -11.16603 -11.09847 -10.96201 -10.52833 -10.31551 -10.07213 -9.10318 -8.68908 -7.86859 -5.32910 0.94176 1.46952 1.48638 1.49426 1.56077 1.56485 1.81512 2.21978 2.50932 3.20941 3.27466 3.51587 3.56487 3.71440 3.92607 3.97506 4.00059 4.04558 4.05175 4.14512 4.18997 4.28451 4.29507 4.33494 4.43606 4.49391 4.54097 4.63865 4.76307 4.77514 4.84054 4.86733 4.88842 4.93766 5.03593 5.08615 5.09547 5.17001 5.23471 5.24504 5.33171 5.36457 5.42912 5.44825 5.52108 5.58165 5.66301 5.69519 5.77252 6.09264 6.38119 6.54861 6.78677 7.14114 7.22955 7.85615 8.38271 9.19328 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.002125 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.996148 B =13171.746494 C =14292.634850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.054 0.946 4 N -0.708 5.708 5 C 0.497 3.503 6 O -0.566 6.566 7 C 0.114 3.886 8 N -0.368 5.368 9 C 0.064 3.936 10 C -0.219 4.219 11 C -0.075 4.075 12 C -0.176 4.176 13 C -0.179 4.179 14 C 0.033 3.967 15 N -0.320 5.320 16 C -0.092 4.092 17 H 0.086 0.914 18 C -0.099 4.099 19 C -0.129 4.129 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.260 4.260 23 H 0.073 0.927 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.969 3.031 27 H -0.274 1.274 28 H -0.299 1.299 29 H -0.275 1.275 30 C 0.155 3.845 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.129 0.871 36 H 0.176 0.824 37 H 0.215 0.785 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.185 0.815 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.053 0.947 49 H -0.015 1.015 50 H 0.248 0.752 51 H -0.011 1.011 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.412 -0.768 23.064 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 H 0.072 0.928 4 N -0.361 5.361 5 C 0.283 3.717 6 O -0.444 6.444 7 C -0.011 4.011 8 N -0.151 5.151 9 C -0.081 4.081 10 C -0.230 4.230 11 C -0.094 4.094 12 C -0.213 4.213 13 C -0.216 4.216 14 C -0.153 4.153 15 N -0.141 5.141 16 C -0.112 4.112 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.168 4.168 20 C 0.046 3.954 21 N -0.331 5.331 22 C -0.390 4.390 23 H 0.091 0.909 24 C -0.251 4.251 25 N -0.585 5.585 26 Si 0.797 3.203 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.200 1.200 30 C 0.029 3.971 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.147 0.853 36 H 0.193 0.807 37 H 0.232 0.768 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.202 0.798 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.003 0.997 50 H 0.057 0.943 51 H 0.007 0.993 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.945 0.077 21.681 25.779 hybrid contribution 0.929 -0.555 -0.136 1.090 sum -13.016 -0.478 21.545 25.176 Atomic orbital electron populations 1.22098 0.93556 1.03098 1.02094 1.20795 0.94838 0.95738 0.83295 0.92800 1.45920 1.66739 1.14761 1.08713 1.21084 0.77682 0.87343 0.85636 1.90764 1.50749 1.17581 1.85333 1.21817 1.06858 0.90208 0.82175 1.48125 1.39904 1.15581 1.11453 1.22869 0.98870 1.01440 0.84939 1.19582 1.08576 0.96751 0.98129 1.20257 1.04157 0.93895 0.91113 1.23050 0.96144 1.01150 1.00932 1.23042 0.94680 1.00721 1.03183 1.24044 0.99341 1.00921 0.91033 1.77478 1.19333 0.95606 1.21651 1.21733 0.95881 1.00167 0.93425 0.89604 1.21454 1.00883 0.97960 0.93406 1.21996 0.96546 1.00309 0.97961 1.20635 0.91033 0.94537 0.89156 1.44321 1.49819 1.38000 1.00956 1.19524 1.11131 1.02765 1.05569 0.90898 1.25867 0.98584 1.00630 1.00064 1.70218 1.39106 1.31380 1.17768 0.85314 0.78041 0.80041 0.76889 1.19985 1.22552 1.20044 1.20965 0.92960 0.94556 0.88573 0.90566 0.93711 0.90549 0.74723 0.85331 0.80689 0.76843 0.85461 0.87130 0.89329 0.90442 0.87254 0.79819 0.89402 0.93762 0.92263 0.91408 0.92882 0.99664 0.94266 0.99324 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.13 71.98 0.66 -2.58 16 2 C 0.16 4.20 2.16 44.99 0.10 4.29 16 3 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 4 N -0.71 -15.69 4.48 -442.54 -1.98 -17.68 16 5 C 0.50 12.57 7.82 87.66 0.69 13.26 16 6 O -0.57 -20.49 15.37 -3.04 -0.05 -20.54 16 7 C 0.11 1.88 6.99 85.64 0.60 2.48 16 8 N -0.37 -8.41 3.40 -351.81 -1.20 -9.61 16 9 C 0.06 1.09 11.36 83.54 0.95 2.04 16 10 C -0.22 -4.29 5.76 -20.15 -0.12 -4.40 16 11 C -0.08 -1.05 6.25 -11.54 -0.07 -1.12 16 12 C -0.18 -2.22 10.03 30.62 0.31 -1.91 16 13 C -0.18 -2.42 10.24 30.62 0.31 -2.11 16 14 C 0.03 0.82 11.35 85.24 0.97 1.79 16 15 N -0.32 -9.80 11.64 -57.02 -0.66 -10.46 16 16 C -0.09 -2.75 1.97 -10.71 -0.02 -2.77 16 17 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 18 C -0.10 -3.02 4.85 30.63 0.15 -2.87 16 19 C -0.13 -4.64 6.08 30.67 0.19 -4.46 16 20 C 0.17 8.35 5.31 86.36 0.46 8.80 16 21 N -0.61 -30.04 2.99 -699.12 -2.09 -32.13 16 22 C -0.26 -13.93 9.59 84.03 0.81 -13.12 16 23 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 24 C -0.06 -3.13 4.91 84.86 0.42 -2.72 16 25 N -0.94 -56.14 11.19 21.65 0.24 -55.90 16 26 Si 0.97 44.21 29.59 68.60 2.03 46.24 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 29 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 30 C 0.16 6.25 5.56 86.36 0.48 6.73 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.54 6.40 -2.38 -0.02 1.53 16 34 H 0.42 6.81 8.43 -92.71 -0.78 6.02 16 35 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.18 0.98 8.07 -2.39 -0.02 0.96 16 37 H 0.22 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.21 6.98 -2.39 -0.02 1.20 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.18 3.87 7.20 -2.91 -0.02 3.85 16 44 H 0.09 2.09 6.36 -2.39 -0.02 2.08 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 48 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 49 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 51 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 52 H 0.06 2.21 7.45 -2.39 -0.02 2.19 16 Total: -1.00 -80.88 413.93 3.28 -77.59 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.13 Total: 21.13 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 6.86 Total: 1.35 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.69 Total: -125.77 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -80.88 3.28 -77.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566961943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.415 kcal (2) G-P(sol) polarization free energy of solvation -80.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds