Wall clock time and date at job start Wed Apr 1 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47429 * 2 1 4 4 C 1.50706 * 109.47375 * 119.99896 * 2 1 3 5 5 N 1.32159 * 120.53372 * 304.93198 * 4 2 1 6 6 C 1.31856 * 120.96787 * 179.97438 * 5 4 2 7 7 N 1.31887 * 122.09163 * 0.02727 * 6 5 4 8 8 C 1.32136 * 120.96650 * 359.65582 * 7 6 5 9 9 C 1.39921 * 120.53961 * 124.90789 * 4 2 1 10 10 C 1.47831 * 120.93748 * 0.02646 * 9 4 2 11 11 O 1.21553 * 120.00364 * 305.93968 * 10 9 4 12 12 N 1.34783 * 119.99850 * 125.94218 * 10 9 4 13 13 C 1.46925 * 120.63255 * 354.39330 * 12 10 9 14 14 C 1.53193 * 108.77501 * 233.62923 * 13 12 10 15 15 C 1.53036 * 109.31203 * 305.36398 * 14 13 12 16 16 C 1.53036 * 109.54076 * 61.36293 * 15 14 13 17 17 H 1.09004 * 109.49633 * 58.61743 * 16 15 14 18 18 C 1.53002 * 109.50139 * 178.68295 * 16 15 14 19 19 H 1.09006 * 109.46687 * 305.00735 * 18 16 15 20 20 C 1.53001 * 109.47058 * 65.00043 * 18 16 15 21 21 N 1.46491 * 109.47329 * 185.00603 * 18 16 15 22 22 C 1.36938 * 120.00491 * 155.00046 * 21 18 16 23 23 H 1.08008 * 119.99265 * 359.97438 * 22 21 18 24 24 C 1.38806 * 120.00560 * 179.97438 * 22 21 18 25 25 N 1.31620 * 119.99966 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00268 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47130 * 89.99791 * 26 24 22 28 28 H 1.48504 * 109.47502 * 210.00275 * 26 24 22 29 29 H 1.48505 * 109.47327 * 330.00134 * 26 24 22 30 30 C 1.46930 * 120.63088 * 174.41288 * 12 10 9 31 31 H 1.08993 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46775 * 300.00463 * 1 2 3 33 33 H 1.09002 * 109.46870 * 59.99731 * 1 2 3 34 34 H 1.09004 * 109.47458 * 239.99703 * 2 1 3 35 35 H 1.08998 * 109.47521 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47314 * 299.99997 * 3 2 1 37 37 H 1.09000 * 109.47461 * 59.99711 * 3 2 1 38 38 H 1.08000 * 118.95522 * 179.97438 * 6 5 4 39 39 H 1.08007 * 120.53598 * 180.31334 * 8 7 6 40 40 H 1.08997 * 109.58909 * 113.83763 * 13 12 10 41 41 H 1.09001 * 109.70333 * 353.48629 * 13 12 10 42 42 H 1.09002 * 109.49398 * 185.41002 * 14 13 12 43 43 H 1.08999 * 109.49584 * 65.31826 * 14 13 12 44 44 H 1.09000 * 109.45655 * 301.34465 * 15 14 13 45 45 H 1.09002 * 109.45862 * 181.38998 * 15 14 13 46 46 H 1.08997 * 109.46980 * 60.00201 * 20 18 16 47 47 H 1.08999 * 109.46882 * 180.02562 * 20 18 16 48 48 H 1.09000 * 109.47054 * 300.00262 * 20 18 16 49 49 H 0.97000 * 120.00412 * 334.99666 * 21 18 16 50 50 H 0.96998 * 120.00040 * 179.97438 * 25 24 22 51 51 H 1.09007 * 109.58567 * 6.57871 * 30 12 10 52 52 H 1.09002 * 109.58532 * 246.15965 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.6417 -0.3273 2.4335 6 6 2.0755 -0.9430 3.5158 7 7 2.9122 -1.9607 3.4551 8 6 3.3491 -2.4134 2.2932 9 6 2.9196 -1.7865 1.1178 10 6 3.3855 -2.2519 -0.2057 11 8 2.5781 -2.5448 -1.0659 12 7 4.7056 -2.3517 -0.4587 13 6 5.6934 -1.8867 0.5246 14 6 6.6481 -0.9050 -0.1621 15 6 7.2570 -1.5716 -1.3978 16 6 6.1446 -1.9336 -2.3845 17 1 5.5998 -1.0323 -2.6653 18 6 6.7572 -2.5702 -3.6337 19 1 7.5079 -1.8997 -4.0522 20 6 7.4138 -3.9003 -3.2586 21 7 5.7063 -2.8071 -4.6264 22 6 6.0238 -2.8751 -5.9567 23 1 7.0490 -2.7536 -6.2741 24 6 5.0281 -3.1001 -6.8973 25 7 3.7788 -3.2487 -6.5106 26 14 5.4611 -3.1921 -8.7121 27 1 5.7766 -4.5971 -9.0751 28 1 4.3090 -2.7186 -9.5206 29 1 6.6422 -2.3337 -8.9834 30 6 5.1842 -2.9270 -1.7231 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.7354 -0.6027 4.4827 39 1 4.0303 -3.2505 2.2514 40 1 6.2571 -2.7378 0.9068 41 1 5.1845 -1.3860 1.3482 42 1 7.4429 -0.6263 0.5299 43 1 6.0983 -0.0133 -0.4634 44 1 7.7858 -2.4765 -1.0987 45 1 7.9555 -0.8838 -1.8744 46 1 6.6632 -4.5707 -2.8401 47 1 7.8506 -4.3535 -4.1485 48 1 8.1957 -3.7239 -2.5200 49 1 4.7855 -2.9159 -4.3415 50 1 3.0830 -3.4055 -7.1679 51 1 4.3374 -3.1120 -2.3840 52 1 5.7064 -3.8629 -1.5242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568415786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:02 Heat of formation + Delta-G solvation = 14.235296 kcal Electronic energy + Delta-G solvation = -31990.991752 eV Core-core repulsion = 27990.480923 eV Total energy + Delta-G solvation = -4000.510829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -41.71200 -39.95995 -37.96007 -36.29071 -35.48907 -33.50309 -32.92849 -31.96129 -31.82061 -29.78330 -27.88559 -27.26113 -26.27380 -25.20680 -24.77896 -24.15245 -23.21067 -21.34902 -21.04454 -19.95450 -18.74129 -18.21035 -17.52015 -17.04217 -16.92917 -16.17242 -15.25921 -14.98743 -14.87253 -14.82962 -14.50561 -14.36365 -14.25196 -13.84158 -13.78001 -13.64638 -13.28235 -13.04958 -13.00832 -12.82457 -12.50023 -12.28772 -12.00910 -11.87836 -11.70711 -11.56112 -11.47893 -11.26329 -11.06087 -11.00389 -10.85494 -10.76121 -10.65122 -10.47067 -10.28495 -10.25369 -9.99494 -9.85580 -9.66044 -9.55299 -9.51942 -8.89062 -8.55966 -6.93251 -5.71742 -3.01519 0.30926 0.70527 2.50896 2.86997 3.40633 3.45317 3.50219 3.52289 3.68184 3.78336 4.00948 4.21231 4.57677 4.60724 4.65628 4.82855 4.86804 4.90721 4.97717 4.99553 5.16339 5.17103 5.26073 5.35207 5.47547 5.57334 5.57432 5.59744 5.70057 5.72512 5.75852 5.77692 5.81274 5.87012 5.91470 5.99550 6.03860 6.08282 6.11606 6.20587 6.21479 6.32503 6.33459 6.50448 6.57635 6.61533 6.71547 6.87921 7.10407 7.31974 7.70525 7.72978 8.05746 8.45831 9.56862 10.14515 10.48524 11.50264 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003123 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.984816 B = 8963.786185 C =10189.116470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.138 4.138 4 C 0.233 3.767 5 N -0.513 5.513 6 C 0.306 3.694 7 N -0.525 5.525 8 C 0.181 3.819 9 C -0.227 4.227 10 C 0.564 3.436 11 O -0.511 6.511 12 N -0.600 5.600 13 C 0.105 3.895 14 C -0.133 4.133 15 C -0.114 4.114 16 C -0.104 4.104 17 H 0.075 0.925 18 C 0.181 3.819 19 H 0.049 0.951 20 C -0.170 4.170 21 N -0.725 5.725 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.115 3.885 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.200 0.800 39 H 0.172 0.828 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.038 0.962 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.103 0.897 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 6.480 22.147 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 C -0.196 4.196 4 C 0.086 3.914 5 N -0.227 5.227 6 C 0.019 3.981 7 N -0.238 5.238 8 C 0.014 3.986 9 C -0.235 4.235 10 C 0.350 3.650 11 O -0.386 6.386 12 N -0.333 5.333 13 C -0.018 4.018 14 C -0.171 4.171 15 C -0.152 4.152 16 C -0.124 4.124 17 H 0.093 0.907 18 C 0.070 3.930 19 H 0.067 0.933 20 C -0.230 4.230 21 N -0.367 5.367 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.006 4.006 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.216 0.784 39 H 0.189 0.811 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.121 0.879 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.802 6.647 22.398 23.378 hybrid contribution 0.297 -0.540 -1.573 1.689 sum 1.100 6.107 20.826 21.731 Atomic orbital electron populations 1.21701 0.92605 1.02362 1.02548 1.20468 0.97794 0.96560 0.93389 1.21776 1.00805 0.94173 1.02867 1.21852 0.86842 0.88776 0.93921 1.68279 1.25267 1.30596 0.98536 1.25167 0.88277 0.86994 0.97649 1.68452 1.13010 1.14056 1.28310 1.23431 0.93071 0.95879 0.86204 1.21694 1.03595 1.01585 0.96584 1.17849 0.82655 0.78355 0.86189 1.90884 1.53215 1.48616 1.45915 1.48123 1.04572 1.61145 1.19484 1.21817 0.90818 0.98126 0.91082 1.21907 0.98611 0.98493 0.98107 1.21612 0.97878 1.00711 0.94995 1.21788 0.95867 0.99119 0.95587 0.90673 1.20167 0.91471 0.93642 0.87706 0.93279 1.22584 0.99608 1.00443 1.00357 1.42489 1.05637 1.86323 1.02259 1.19202 0.93365 1.41468 0.83081 0.91284 1.24741 0.95410 1.02866 0.97847 1.69670 0.99324 1.55822 1.32865 0.86240 0.76994 0.77581 0.85646 1.21808 1.21830 1.20849 1.21957 0.99396 0.95682 0.83544 0.92561 0.91727 0.91549 0.87509 0.92926 0.91300 0.91736 0.78377 0.81072 0.90911 0.90800 0.90844 0.91567 0.91382 0.91468 0.93241 0.92842 0.94313 0.78080 0.93504 0.87902 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.06 37.15 0.34 -1.19 16 2 C -0.06 -0.78 3.00 -91.77 -0.28 -1.06 16 3 C -0.14 -1.46 9.15 37.16 0.34 -1.12 16 4 C 0.23 2.86 5.52 -81.82 -0.45 2.41 16 5 N -0.51 -5.70 10.00 -10.48 -0.10 -5.80 16 6 C 0.31 2.87 12.27 -92.02 -1.13 1.74 16 7 N -0.52 -5.33 10.42 -14.24 -0.15 -5.48 16 8 C 0.18 1.86 9.12 -16.78 -0.15 1.70 16 9 C -0.23 -2.80 4.61 -104.70 -0.48 -3.28 16 10 C 0.56 8.34 6.42 -12.33 -0.08 8.27 16 11 O -0.51 -9.72 14.84 5.32 0.08 -9.64 16 12 N -0.60 -7.85 2.97 -173.88 -0.52 -8.37 16 13 C 0.10 1.00 5.65 -3.71 -0.02 0.98 16 14 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 15 C -0.11 -1.30 4.89 -26.69 -0.13 -1.43 16 16 C -0.10 -1.59 2.27 -90.50 -0.21 -1.80 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 18 C 0.18 3.38 2.67 -67.93 -0.18 3.20 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 C -0.17 -2.85 8.77 37.16 0.33 -2.53 16 21 N -0.73 -17.79 5.06 -53.43 -0.27 -18.06 16 22 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 26 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.12 1.79 5.19 -3.71 -0.02 1.77 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 7.99 -51.92 -0.41 0.26 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.61 5.53 -51.93 -0.29 1.32 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.17 1.38 7.84 -52.48 -0.41 0.97 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.65 5.40 -51.93 -0.28 0.37 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.72 6.63 -51.93 -0.34 0.38 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.83 6.23 -51.93 -0.32 0.51 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 49 H 0.38 10.20 6.48 -40.82 -0.26 9.94 16 50 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.10 2.01 5.82 -51.93 -0.30 1.71 16 52 H 0.08 1.09 6.06 -51.93 -0.31 0.78 16 LS Contribution 403.72 15.07 6.08 6.08 Total: -1.00 -32.75 403.72 -10.03 -42.78 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.32 Total: 9.62 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.53 Total: -0.96 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.32 Total: -65.35 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.75 -10.03 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568415786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.016 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds