Wall clock time and date at job start Wed Apr 1 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47429 * 2 1 4 4 C 1.50706 * 109.47375 * 119.99896 * 2 1 3 5 5 N 1.32159 * 120.53372 * 304.93198 * 4 2 1 6 6 C 1.31856 * 120.96787 * 179.97438 * 5 4 2 7 7 N 1.31887 * 122.09163 * 0.02727 * 6 5 4 8 8 C 1.32136 * 120.96650 * 359.65582 * 7 6 5 9 9 C 1.39921 * 120.53961 * 124.90789 * 4 2 1 10 10 C 1.47831 * 120.93748 * 0.02646 * 9 4 2 11 11 O 1.21553 * 120.00364 * 305.93968 * 10 9 4 12 12 N 1.34783 * 119.99850 * 125.94218 * 10 9 4 13 13 C 1.46925 * 120.63255 * 354.39330 * 12 10 9 14 14 C 1.53193 * 108.77501 * 233.62923 * 13 12 10 15 15 C 1.53036 * 109.31203 * 305.36398 * 14 13 12 16 16 C 1.53036 * 109.54076 * 61.36293 * 15 14 13 17 17 H 1.09004 * 109.49633 * 58.61743 * 16 15 14 18 18 C 1.53002 * 109.50139 * 178.68295 * 16 15 14 19 19 H 1.09006 * 109.46687 * 305.00735 * 18 16 15 20 20 C 1.53001 * 109.47058 * 65.00043 * 18 16 15 21 21 N 1.46491 * 109.47329 * 185.00603 * 18 16 15 22 22 C 1.36938 * 120.00491 * 155.00046 * 21 18 16 23 23 H 1.08008 * 119.99265 * 359.97438 * 22 21 18 24 24 C 1.38806 * 120.00560 * 179.97438 * 22 21 18 25 25 N 1.31620 * 119.99966 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00268 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47130 * 89.99791 * 26 24 22 28 28 H 1.48504 * 109.47502 * 210.00275 * 26 24 22 29 29 H 1.48505 * 109.47327 * 330.00134 * 26 24 22 30 30 C 1.46930 * 120.63088 * 174.41288 * 12 10 9 31 31 H 1.08993 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46775 * 300.00463 * 1 2 3 33 33 H 1.09002 * 109.46870 * 59.99731 * 1 2 3 34 34 H 1.09004 * 109.47458 * 239.99703 * 2 1 3 35 35 H 1.08998 * 109.47521 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47314 * 299.99997 * 3 2 1 37 37 H 1.09000 * 109.47461 * 59.99711 * 3 2 1 38 38 H 1.08000 * 118.95522 * 179.97438 * 6 5 4 39 39 H 1.08007 * 120.53598 * 180.31334 * 8 7 6 40 40 H 1.08997 * 109.58909 * 113.83763 * 13 12 10 41 41 H 1.09001 * 109.70333 * 353.48629 * 13 12 10 42 42 H 1.09002 * 109.49398 * 185.41002 * 14 13 12 43 43 H 1.08999 * 109.49584 * 65.31826 * 14 13 12 44 44 H 1.09000 * 109.45655 * 301.34465 * 15 14 13 45 45 H 1.09002 * 109.45862 * 181.38998 * 15 14 13 46 46 H 1.08997 * 109.46980 * 60.00201 * 20 18 16 47 47 H 1.08999 * 109.46882 * 180.02562 * 20 18 16 48 48 H 1.09000 * 109.47054 * 300.00262 * 20 18 16 49 49 H 0.97000 * 120.00412 * 334.99666 * 21 18 16 50 50 H 0.96998 * 120.00040 * 179.97438 * 25 24 22 51 51 H 1.09007 * 109.58567 * 6.57871 * 30 12 10 52 52 H 1.09002 * 109.58532 * 246.15965 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.6417 -0.3273 2.4335 6 6 2.0755 -0.9430 3.5158 7 7 2.9122 -1.9607 3.4551 8 6 3.3491 -2.4134 2.2932 9 6 2.9196 -1.7865 1.1178 10 6 3.3855 -2.2519 -0.2057 11 8 2.5781 -2.5448 -1.0659 12 7 4.7056 -2.3517 -0.4587 13 6 5.6934 -1.8867 0.5246 14 6 6.6481 -0.9050 -0.1621 15 6 7.2570 -1.5716 -1.3978 16 6 6.1446 -1.9336 -2.3845 17 1 5.5998 -1.0323 -2.6653 18 6 6.7572 -2.5702 -3.6337 19 1 7.5079 -1.8997 -4.0522 20 6 7.4138 -3.9003 -3.2586 21 7 5.7063 -2.8071 -4.6264 22 6 6.0238 -2.8751 -5.9567 23 1 7.0490 -2.7536 -6.2741 24 6 5.0281 -3.1001 -6.8973 25 7 3.7788 -3.2487 -6.5106 26 14 5.4611 -3.1921 -8.7121 27 1 5.7766 -4.5971 -9.0751 28 1 4.3090 -2.7186 -9.5206 29 1 6.6422 -2.3337 -8.9834 30 6 5.1842 -2.9270 -1.7231 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.7354 -0.6027 4.4827 39 1 4.0303 -3.2505 2.2514 40 1 6.2571 -2.7378 0.9068 41 1 5.1845 -1.3860 1.3482 42 1 7.4429 -0.6263 0.5299 43 1 6.0983 -0.0133 -0.4634 44 1 7.7858 -2.4765 -1.0987 45 1 7.9555 -0.8838 -1.8744 46 1 6.6632 -4.5707 -2.8401 47 1 7.8506 -4.3535 -4.1485 48 1 8.1957 -3.7239 -2.5200 49 1 4.7855 -2.9159 -4.3415 50 1 3.0830 -3.4055 -7.1679 51 1 4.3374 -3.1120 -2.3840 52 1 5.7064 -3.8629 -1.5242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568415786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:52 Heat of formation + Delta-G solvation = -5.906661 kcal Electronic energy + Delta-G solvation = -31991.865173 eV Core-core repulsion = 27990.480923 eV Total energy + Delta-G solvation = -4001.384250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.66 seconds Orbital eigenvalues (eV) -42.61050 -41.03629 -39.20842 -37.28900 -36.86079 -34.83733 -34.09791 -33.30265 -32.74527 -31.38583 -29.39011 -28.16669 -27.27241 -26.30486 -26.04881 -25.34398 -24.63549 -22.49010 -21.95507 -21.16182 -19.97261 -19.30396 -19.00979 -18.36785 -17.76261 -17.33548 -16.72430 -16.26121 -16.02044 -15.88609 -15.61330 -15.46905 -15.33457 -15.23378 -15.11667 -14.60708 -14.37185 -14.25560 -14.14866 -13.97418 -13.92267 -13.40191 -13.15093 -13.00031 -12.85767 -12.79863 -12.65185 -12.59745 -12.40647 -12.35005 -12.12947 -12.04043 -11.92775 -11.78701 -11.73754 -11.60519 -11.38251 -11.20663 -11.01666 -10.92119 -10.61569 -10.38362 -9.67965 -8.99221 -7.91403 -5.20388 -0.54019 -0.14537 1.40736 1.45310 1.47386 1.55599 1.81618 2.56616 2.57353 2.83595 3.05246 3.16908 3.27640 3.41424 3.70535 3.71909 3.84485 3.91294 3.98662 4.04108 4.05895 4.07828 4.20087 4.26219 4.37745 4.39286 4.53569 4.55733 4.62773 4.69696 4.70918 4.79664 4.81286 4.83594 4.84893 4.90353 5.01373 5.08919 5.09195 5.13792 5.14630 5.19903 5.25590 5.30174 5.35515 5.43126 5.48116 5.55813 5.70173 5.74141 6.24986 6.29883 6.89651 6.95055 7.35097 8.14145 8.34732 9.31875 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003123 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.984816 B = 8963.786185 C =10189.116470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.131 4.131 4 C 0.226 3.774 5 N -0.520 5.520 6 C 0.312 3.688 7 N -0.526 5.526 8 C 0.194 3.806 9 C -0.243 4.243 10 C 0.563 3.437 11 O -0.569 6.569 12 N -0.595 5.595 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.091 4.091 17 H 0.043 0.957 18 C 0.173 3.827 19 H 0.046 0.954 20 C -0.158 4.158 21 N -0.741 5.741 22 C -0.234 4.234 23 H 0.077 0.923 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.970 3.030 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.267 1.267 30 C 0.124 3.876 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.238 0.762 39 H 0.196 0.804 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.032 0.968 48 H 0.082 0.918 49 H 0.370 0.630 50 H 0.248 0.752 51 H 0.051 0.949 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 7.056 25.360 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 C -0.188 4.188 4 C 0.079 3.921 5 N -0.234 5.234 6 C 0.026 3.974 7 N -0.240 5.240 8 C 0.027 3.973 9 C -0.251 4.251 10 C 0.350 3.650 11 O -0.448 6.448 12 N -0.326 5.326 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.145 4.145 16 C -0.111 4.111 17 H 0.061 0.939 18 C 0.064 3.936 19 H 0.064 0.936 20 C -0.217 4.217 21 N -0.381 5.381 22 C -0.366 4.366 23 H 0.095 0.905 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.800 3.200 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.192 1.192 30 C 0.002 3.998 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.213 0.787 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.101 0.899 49 H 0.202 0.798 50 H 0.057 0.943 51 H 0.070 0.930 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.476 7.249 25.669 26.899 hybrid contribution -0.462 -0.687 -2.461 2.597 sum 3.014 6.562 23.208 24.306 Atomic orbital electron populations 1.21658 0.92056 1.01531 1.03414 1.20394 0.98301 0.97356 0.92545 1.21718 1.00531 0.93011 1.03566 1.21804 0.86932 0.88986 0.94350 1.68338 1.25621 1.31130 0.98315 1.25975 0.86970 0.86005 0.98451 1.68592 1.13335 1.14311 1.27729 1.23769 0.92550 0.95651 0.85308 1.21482 1.05077 1.02702 0.95810 1.18266 0.82685 0.77443 0.86653 1.90856 1.54791 1.51191 1.47968 1.48164 1.04911 1.60329 1.19182 1.22166 0.90194 0.99458 0.90345 1.21903 0.99307 0.97549 0.97797 1.21592 0.96267 1.02029 0.94580 1.21599 0.96945 0.97239 0.95359 0.93889 1.20468 0.90213 0.95020 0.87878 0.93587 1.22407 1.00324 0.98405 1.00614 1.42768 1.06342 1.86398 1.02629 1.19633 0.93493 1.38947 0.84530 0.90472 1.25567 0.95396 1.04084 1.02205 1.69861 1.00350 1.58295 1.33774 0.85179 0.76760 0.77632 0.80454 1.21524 1.22647 1.19200 1.21652 0.97545 0.96550 0.84075 0.94201 0.90385 0.91054 0.91025 0.93232 0.91008 0.90523 0.74654 0.78706 0.87775 0.89577 0.87142 0.93101 0.89261 0.90774 0.93622 0.94866 0.89911 0.79820 0.94339 0.93030 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.06 71.98 0.65 -2.41 16 2 C -0.07 -1.73 3.00 -11.54 -0.03 -1.77 16 3 C -0.13 -2.77 9.15 71.98 0.66 -2.11 16 4 C 0.23 5.51 5.52 42.92 0.24 5.75 16 5 N -0.52 -10.65 10.00 -187.06 -1.87 -12.52 16 6 C 0.31 4.92 12.27 180.84 2.22 7.13 16 7 N -0.53 -9.07 10.42 -198.97 -2.07 -11.14 16 8 C 0.19 3.54 9.12 85.07 0.78 4.31 16 9 C -0.24 -5.91 4.61 -19.91 -0.09 -6.00 16 10 C 0.56 17.38 6.42 86.78 0.56 17.94 16 11 O -0.57 -23.74 14.84 -3.88 -0.06 -23.80 16 12 N -0.59 -15.48 2.97 -822.31 -2.44 -17.92 16 13 C 0.10 1.59 5.65 86.36 0.49 2.08 16 14 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 15 C -0.11 -2.13 4.89 30.62 0.15 -1.98 16 16 C -0.09 -2.83 2.27 -10.72 -0.02 -2.85 16 17 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 18 C 0.17 6.49 2.67 44.99 0.12 6.61 16 19 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 20 C -0.16 -5.08 8.77 71.98 0.63 -4.45 16 21 N -0.74 -37.93 5.06 -322.94 -1.63 -39.57 16 22 C -0.23 -13.19 9.93 84.03 0.83 -12.35 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 24 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 25 N -0.97 -62.35 13.06 21.65 0.28 -62.07 16 26 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 29 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 30 C 0.12 3.96 5.19 86.36 0.45 4.41 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.61 7.99 -2.38 -0.02 1.59 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.40 5.53 -2.39 -0.01 2.38 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.20 2.50 7.84 -2.91 -0.02 2.47 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.23 5.40 -2.39 -0.01 1.22 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 1.45 6.63 -2.39 -0.02 1.43 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.50 6.23 -2.39 -0.01 1.48 16 47 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.93 6.60 -2.39 -0.02 1.92 16 49 H 0.37 21.04 6.48 -92.71 -0.60 20.44 16 50 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.05 2.21 5.82 -2.38 -0.01 2.20 16 52 H 0.09 2.57 6.06 -2.39 -0.01 2.56 16 Total: -1.00 -77.35 403.72 2.83 -74.52 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.33 Total: 34.82 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 8.27 Total: 8.19 kcal Atomic # 7 Polarization: -135.48 SS G_CDS: -7.74 Total: -143.22 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -77.35 2.83 -74.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568415786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.612 kcal (2) G-P(sol) polarization free energy of solvation -77.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.66 seconds