Wall clock time and date at job start Wed Apr 1 2020 05:37:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 109.47190 * 2 1
4 4 N 1.46495 * 109.47084 * 120.00252 * 2 1 3
5 5 C 1.36937 * 120.00425 * 274.99786 * 4 2 1
6 6 H 1.08007 * 119.99215 * 359.97438 * 5 4 2
7 7 C 1.38809 * 120.00617 * 180.02562 * 5 4 2
8 8 N 1.31617 * 119.99776 * 359.97438 * 7 5 4
9 9 Si 1.86801 * 120.00319 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.46796 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47312 * 119.99294 * 9 7 5
12 12 H 1.48502 * 109.47210 * 240.00168 * 9 7 5
13 13 C 1.52998 * 109.46735 * 239.99961 * 2 1 3
14 14 H 1.09000 * 110.89031 * 302.42523 * 13 2 1
15 15 C 1.55154 * 111.00695 * 66.35410 * 13 2 1
16 16 C 1.54333 * 103.02394 * 153.37894 * 15 13 2
17 17 N 1.47020 * 107.26423 * 338.14055 * 16 15 13
18 18 C 1.34775 * 125.64618 * 178.85471 * 17 16 15
19 19 O 1.21682 * 120.00202 * 184.83169 * 18 17 16
20 20 C 1.46771 * 120.00138 * 4.82358 * 18 17 16
21 21 C 1.36685 * 126.87768 * 354.34570 * 20 18 17
22 22 N 1.33306 * 107.78887 * 179.79006 * 21 20 18
23 23 C 1.30954 * 109.75570 * 359.77420 * 22 21 20
24 24 N 1.34539 * 108.95156 * 0.60672 * 23 22 21
25 25 C 1.46470 * 126.52548 * 178.99181 * 24 23 22
26 26 C 1.53036 * 109.54963 * 28.20795 * 25 24 23
27 27 C 1.52844 * 109.61643 * 270.57800 * 26 25 24
28 28 C 1.52587 * 110.28474 * 61.27278 * 27 26 25
29 29 C 1.50933 * 125.84380 * 181.14382 * 23 22 21
30 30 C 1.47425 * 108.70484 * 358.58479 * 17 16 15
31 31 H 1.09000 * 109.47652 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47202 * 299.99818 * 1 2 3
33 33 H 1.08997 * 109.47516 * 59.99771 * 1 2 3
34 34 H 0.97009 * 120.00196 * 94.99774 * 4 2 1
35 35 H 0.96999 * 120.00088 * 180.02562 * 8 7 5
36 36 H 1.09000 * 110.72128 * 271.93997 * 15 13 2
37 37 H 1.09005 * 110.71753 * 35.03117 * 15 13 2
38 38 H 1.09003 * 109.98979 * 218.66560 * 16 15 13
39 39 H 1.08996 * 109.77849 * 97.50147 * 16 15 13
40 40 H 1.08002 * 126.10563 * 359.81188 * 21 20 18
41 41 H 1.09004 * 109.46111 * 148.22883 * 25 24 23
42 42 H 1.09007 * 109.45487 * 268.19100 * 25 24 23
43 43 H 1.09000 * 109.44713 * 30.63943 * 26 25 24
44 44 H 1.09004 * 109.44861 * 150.54578 * 26 25 24
45 45 H 1.09001 * 109.34991 * 301.02056 * 27 26 25
46 46 H 1.09002 * 109.19570 * 181.43325 * 27 26 25
47 47 H 1.08993 * 109.45958 * 273.37195 * 28 27 26
48 48 H 1.09003 * 109.44236 * 153.40918 * 28 27 26
49 49 H 1.08994 * 109.50534 * 346.37185 * 29 23 22
50 50 H 1.09004 * 109.50212 * 106.45122 * 29 23 22
51 51 H 1.08990 * 110.36717 * 143.19539 * 30 17 16
52 52 H 1.09003 * 110.36844 * 265.41005 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1491 -0.0076 2.3757
6 1 1.8927 1.0404 2.4241
7 6 2.6123 -0.6619 3.5090
8 7 2.9253 -1.9389 3.4498
9 14 2.7901 0.2697 5.1183
10 1 2.3752 1.6820 4.9211
11 1 1.9298 -0.3595 6.1522
12 1 4.2071 0.2278 5.5607
13 6 2.0399 -0.7213 -1.2493
14 1 1.6546 -1.7399 -1.2944
15 6 1.6775 0.0688 -2.5345
16 6 2.7786 -0.3589 -3.5277
17 7 3.9163 -0.8466 -2.7344
18 6 5.0705 -1.3323 -3.2327
19 8 5.9120 -1.7905 -2.4826
20 6 5.3126 -1.3086 -4.6801
21 6 4.4305 -0.9300 -5.6532
22 7 5.0454 -1.0510 -6.8297
23 6 6.2689 -1.4810 -6.6476
24 7 6.4760 -1.6646 -5.3310
25 6 7.7039 -2.1565 -4.7020
26 6 8.9079 -1.7891 -5.5724
27 6 9.1684 -2.9040 -6.5849
28 6 7.9611 -3.0788 -7.5016
29 6 7.2915 -1.7219 -7.7312
30 6 3.5880 -0.7104 -1.3037
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3634 0.5138 -0.8899
34 1 2.2490 -1.6319 1.1525
35 1 3.2486 -2.3962 4.2418
36 1 0.6920 -0.2201 -2.8998
37 1 1.7200 1.1426 -2.3519
38 1 3.0868 0.4941 -4.1324
39 1 2.4059 -1.1563 -4.1706
40 1 3.4165 -0.5927 -5.4967
41 1 7.8152 -1.7016 -3.7177
42 1 7.6491 -3.2401 -4.5970
43 1 8.7026 -0.8586 -6.1016
44 1 9.7867 -1.6603 -4.9405
45 1 9.3565 -3.8373 -6.0541
46 1 10.0421 -2.6472 -7.1839
47 1 7.2489 -3.7612 -7.0378
48 1 8.2876 -3.4889 -8.4573
49 1 6.7990 -1.7190 -8.7035
50 1 8.0446 -0.9344 -7.7024
51 1 3.9933 -1.5504 -0.7398
52 1 3.9763 0.2303 -0.9132
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569814102.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:37:15
Heat of formation + Delta-G solvation = 15.829203 kcal
Electronic energy + Delta-G solvation = -31090.611144 eV
Core-core repulsion = 27090.169432 eV
Total energy + Delta-G solvation = -4000.441712 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-43.58010 -41.02666 -39.02557 -38.30643 -36.84784 -34.74569 -34.35603 -32.43385
-31.84624 -30.86732 -30.06669 -29.36086 -27.10689 -25.92632 -25.80428 -24.92370
-23.18367 -22.71831 -21.32426 -21.08445 -20.87907 -20.32023 -19.19013 -18.31419
-17.68178 -17.21597 -17.10192 -16.58285 -16.48307 -16.01737 -15.80729 -15.58390
-15.45122 -15.18694 -14.93887 -14.60014 -14.49287 -14.23400 -13.95899 -13.87855
-13.75503 -13.56425 -13.38407 -13.11017 -13.02933 -12.86187 -12.72469 -12.51785
-12.34089 -12.14698 -12.04539 -11.95516 -11.79093 -11.69372 -11.58413 -11.52597
-11.36000 -11.34007 -11.00992 -10.94138 -10.78321 -9.84132 -9.52298 -8.98296
-7.92357 -5.19689 0.18737 1.29544 1.45658 1.46504 1.55955 1.68843
2.07113 2.16909 2.56399 3.20012 3.29371 3.42040 3.52268 3.59756
3.62964 3.71957 3.80141 3.86693 4.00438 4.14014 4.16496 4.19898
4.24400 4.26877 4.28893 4.42588 4.53838 4.55078 4.64813 4.66288
4.72549 4.78639 4.84378 4.86092 4.87745 4.96710 4.99234 5.04928
5.12555 5.14926 5.15972 5.21965 5.26007 5.33037 5.34065 5.42284
5.43375 5.54781 5.67122 6.01861 6.30040 6.35523 6.77439 6.95897
7.35737 8.13925 8.34554 9.31579
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.016784 B = 0.002384 C = 0.002140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1667.894434 B =11742.978514 C =13080.622915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.179 3.821
3 H 0.049 0.951
4 N -0.739 5.739
5 C -0.227 4.227
6 H 0.078 0.922
7 C -0.081 4.081
8 N -0.972 5.972
9 Si 0.967 3.033
10 H -0.263 1.263
11 H -0.295 1.295
12 H -0.299 1.299
13 C -0.092 4.092
14 H 0.077 0.923
15 C -0.111 4.111
16 C 0.087 3.913
17 N -0.603 5.603
18 C 0.596 3.404
19 O -0.593 6.593
20 C -0.113 4.113
21 C 0.038 3.962
22 N -0.519 5.519
23 C 0.237 3.763
24 N -0.423 5.423
25 C 0.098 3.902
26 C -0.133 4.133
27 C -0.120 4.120
28 C -0.120 4.120
29 C -0.038 4.038
30 C 0.130 3.870
31 H 0.040 0.960
32 H 0.033 0.967
33 H 0.083 0.917
34 H 0.369 0.631
35 H 0.247 0.753
36 H 0.117 0.883
37 H 0.092 0.908
38 H 0.097 0.903
39 H 0.094 0.906
40 H 0.212 0.788
41 H 0.079 0.921
42 H 0.083 0.917
43 H 0.082 0.918
44 H 0.099 0.901
45 H 0.070 0.930
46 H 0.097 0.903
47 H 0.044 0.956
48 H 0.104 0.896
49 H 0.111 0.889
50 H 0.110 0.890
51 H 0.040 0.960
52 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.193 2.248 -28.970 29.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.071 3.929
3 H 0.067 0.933
4 N -0.378 5.378
5 C -0.359 4.359
6 H 0.096 0.904
7 C -0.273 4.273
8 N -0.624 5.624
9 Si 0.797 3.203
10 H -0.187 1.187
11 H -0.223 1.223
12 H -0.227 1.227
13 C -0.112 4.112
14 H 0.095 0.905
15 C -0.149 4.149
16 C -0.035 4.035
17 N -0.335 5.335
18 C 0.387 3.613
19 O -0.475 6.475
20 C -0.229 4.229
21 C -0.117 4.117
22 N -0.237 5.237
23 C -0.025 4.025
24 N -0.103 5.103
25 C -0.024 4.024
26 C -0.171 4.171
27 C -0.157 4.157
28 C -0.158 4.158
29 C -0.077 4.077
30 C 0.007 3.993
31 H 0.059 0.941
32 H 0.053 0.947
33 H 0.101 0.899
34 H 0.201 0.799
35 H 0.056 0.944
36 H 0.135 0.865
37 H 0.111 0.889
38 H 0.115 0.885
39 H 0.112 0.888
40 H 0.228 0.772
41 H 0.097 0.903
42 H 0.101 0.899
43 H 0.100 0.900
44 H 0.118 0.882
45 H 0.089 0.911
46 H 0.115 0.885
47 H 0.063 0.937
48 H 0.123 0.877
49 H 0.129 0.871
50 H 0.128 0.872
51 H 0.059 0.941
52 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 7.510 2.269 -29.158 30.195
hybrid contribution 0.550 -0.565 2.819 2.927
sum 8.060 1.704 -26.339 27.597
Atomic orbital electron populations
1.22270 0.96825 1.00943 1.01221 1.20431 0.93277 0.94786 0.84431
0.93327 1.42684 1.78441 1.10251 1.06459 1.19637 1.33961 0.94113
0.88212 0.90440 1.25516 1.03499 0.96844 1.01441 1.69832 1.53123
1.10304 1.29111 0.85155 0.76490 0.78402 0.80271 1.18748 1.22274
1.22712 1.22502 0.91934 1.00682 0.96114 0.90476 1.22755 0.99197
1.01191 0.91750 1.22754 0.85342 1.00417 0.94938 1.48187 1.15341
1.61459 1.08487 1.16769 0.81104 0.77507 0.85950 1.90784 1.46174
1.49145 1.61425 1.20520 0.91246 1.18022 0.93118 1.23684 1.00879
1.00557 0.86564 1.70192 1.05170 1.21221 1.27167 1.24302 0.95015
0.99482 0.83673 1.45430 1.11581 1.46192 1.07109 1.22252 0.81858
1.00409 0.97845 1.22070 0.95927 1.00744 0.98324 1.21636 0.98939
0.98199 0.96973 1.21607 0.97015 0.95303 1.01920 1.20520 0.93740
0.99666 0.93745 1.22020 0.96808 1.00410 0.80017 0.94061 0.94745
0.89875 0.79938 0.94373 0.86489 0.88916 0.88472 0.88822 0.77181
0.90261 0.89869 0.90006 0.88220 0.91142 0.88482 0.93710 0.87707
0.87104 0.87243 0.94108 0.92390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.79 9.34 71.98 0.67 -4.12 16
2 C 0.18 6.48 2.41 44.99 0.11 6.58 16
3 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16
4 N -0.74 -36.54 4.82 -322.96 -1.56 -38.09 16
5 C -0.23 -12.52 9.93 84.03 0.83 -11.69 16
6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16
7 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16
8 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16
9 Si 0.97 47.16 29.55 68.60 2.03 49.19 16
10 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16
11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16
12 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16
13 C -0.09 -2.75 2.63 -9.40 -0.02 -2.77 16
14 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16
15 C -0.11 -2.07 5.59 31.78 0.18 -1.89 16
16 C 0.09 1.67 5.00 86.73 0.43 2.10 16
17 N -0.60 -18.24 3.33 -816.37 -2.71 -20.95 16
18 C 0.60 20.53 7.81 86.47 0.68 21.21 16
19 O -0.59 -25.21 15.19 -4.29 -0.07 -25.27 16
20 C -0.11 -3.22 6.88 40.04 0.28 -2.95 16
21 C 0.04 0.90 10.38 84.11 0.87 1.77 16
22 N -0.52 -12.66 11.20 -187.06 -2.10 -14.75 16
23 C 0.24 5.05 6.83 138.23 0.94 6.00 16
24 N -0.42 -10.50 3.10 -501.45 -1.55 -12.05 16
25 C 0.10 2.12 5.82 86.40 0.50 2.63 16
26 C -0.13 -1.67 5.55 30.55 0.17 -1.50 16
27 C -0.12 -0.98 5.68 30.41 0.17 -0.81 16
28 C -0.12 -1.13 5.67 30.47 0.17 -0.96 16
29 C -0.04 -0.45 5.54 29.94 0.17 -0.28 16
30 C 0.13 4.66 6.11 86.86 0.53 5.19 16
31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16
33 H 0.08 1.87 7.50 -2.39 -0.02 1.85 16
34 H 0.37 20.20 7.80 -92.70 -0.72 19.48 16
35 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16
36 H 0.12 1.52 8.13 -2.39 -0.02 1.50 16
37 H 0.09 1.57 8.01 -2.38 -0.02 1.55 16
38 H 0.10 1.49 6.93 -2.39 -0.02 1.47 16
39 H 0.09 1.47 6.98 -2.39 -0.02 1.45 16
40 H 0.21 3.67 4.46 -2.91 -0.01 3.66 16
41 H 0.08 2.18 6.67 -2.38 -0.02 2.17 16
42 H 0.08 1.82 7.82 -2.38 -0.02 1.80 16
43 H 0.08 1.00 5.68 -2.39 -0.01 0.99 16
44 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16
45 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16
46 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16
47 H 0.04 0.63 7.84 -2.39 -0.02 0.61 16
48 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16
49 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16
50 H 0.11 0.93 6.30 -2.39 -0.02 0.91 16
51 H 0.04 1.81 7.99 -2.39 -0.02 1.79 16
52 H 0.06 2.22 8.04 -2.39 -0.02 2.21 16
Total: -1.00 -79.26 397.65 1.68 -77.57
By element:
Atomic # 1 Polarization: 30.84 SS G_CDS: 0.21 Total: 31.04 kcal
Atomic # 6 Polarization: 7.09 SS G_CDS: 7.15 Total: 14.24 kcal
Atomic # 7 Polarization: -139.14 SS G_CDS: -7.64 Total: -146.77 kcal
Atomic # 8 Polarization: -25.21 SS G_CDS: -0.07 Total: -25.27 kcal
Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal
Total: -79.26 1.68 -77.57 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569814102.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.404 kcal
(2) G-P(sol) polarization free energy of solvation -79.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.575 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds