Wall clock time and date at job start Wed Apr 1 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47449 * 2 1 4 4 N 1.46492 * 109.47348 * 239.99612 * 2 1 3 5 5 C 1.36936 * 119.99946 * 85.00149 * 4 2 1 6 6 H 1.07999 * 119.99889 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00219 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99853 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47035 * 60.00125 * 9 7 5 11 11 H 1.48498 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47203 * 300.00200 * 9 7 5 13 13 C 1.53009 * 109.47019 * 119.99893 * 2 1 3 14 14 H 1.08992 * 110.88411 * 63.88060 * 13 2 1 15 15 C 1.55161 * 111.00474 * 299.99873 * 13 2 1 16 16 C 1.54320 * 102.94191 * 206.38840 * 15 13 2 17 17 N 1.47024 * 107.27356 * 22.19046 * 16 15 13 18 18 C 1.34767 * 125.64773 * 181.02441 * 17 16 15 19 19 O 1.21679 * 120.00002 * 184.74878 * 18 17 16 20 20 C 1.46769 * 120.00072 * 4.74995 * 18 17 16 21 21 C 1.36689 * 126.87902 * 354.23735 * 20 18 17 22 22 N 1.33309 * 107.79322 * 179.75826 * 21 20 18 23 23 C 1.30949 * 109.75429 * 359.76826 * 22 21 20 24 24 N 1.34554 * 108.95270 * 0.63416 * 23 22 21 25 25 C 1.46470 * 126.52065 * 178.93485 * 24 23 22 26 26 C 1.53046 * 109.56784 * 28.18290 * 25 24 23 27 27 C 1.52826 * 109.58109 * 270.60207 * 26 25 24 28 28 C 1.52537 * 110.32659 * 61.27145 * 27 26 25 29 29 C 1.50935 * 125.86127 * 181.06803 * 23 22 21 30 30 C 1.47421 * 108.70197 * 1.28970 * 17 16 15 31 31 H 1.08998 * 109.46952 * 300.00244 * 1 2 3 32 32 H 1.08999 * 109.47237 * 59.99787 * 1 2 3 33 33 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00306 * 265.00204 * 4 2 1 35 35 H 0.97001 * 120.00297 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.71469 * 88.01832 * 15 13 2 37 37 H 1.09003 * 110.86855 * 324.82409 * 15 13 2 38 38 H 1.09004 * 109.87765 * 262.77643 * 16 15 13 39 39 H 1.08996 * 110.00886 * 141.68580 * 16 15 13 40 40 H 1.07998 * 126.10448 * 359.75734 * 21 20 18 41 41 H 1.09000 * 109.45452 * 268.15729 * 25 24 23 42 42 H 1.09000 * 109.44528 * 148.20216 * 25 24 23 43 43 H 1.08999 * 109.45088 * 30.63624 * 26 25 24 44 44 H 1.09001 * 109.44370 * 150.57933 * 26 25 24 45 45 H 1.08998 * 109.32887 * 181.49124 * 27 26 25 46 46 H 1.08997 * 109.33288 * 300.98603 * 27 26 25 47 47 H 1.09002 * 109.44047 * 273.36284 * 28 27 26 48 48 H 1.09003 * 109.45802 * 153.40264 * 28 27 26 49 49 H 1.09002 * 109.49645 * 346.47182 * 29 23 22 50 50 H 1.09002 * 109.50361 * 106.53865 * 29 23 22 51 51 H 1.08999 * 110.37062 * 94.48061 * 30 17 16 52 52 H 1.08999 * 110.37051 * 216.80711 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1960 5 6 2.1492 -0.0076 -2.3756 6 1 1.8919 1.0402 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9391 -3.4500 9 14 2.7892 0.2696 -5.1185 10 1 3.7446 1.3920 -4.9377 11 1 3.2983 -0.6488 -6.1685 12 1 1.4667 0.8064 -5.5284 13 6 2.0400 -0.7213 1.2493 14 1 1.7468 -1.7710 1.2388 15 6 1.5425 -0.0177 2.5397 16 6 2.6244 -0.3900 3.5753 17 7 3.8422 -0.7379 2.8286 18 6 5.0089 -1.1384 3.3714 19 8 5.9804 -1.3182 2.6612 20 6 5.1076 -1.3579 4.8193 21 6 4.1471 -1.0963 5.7560 22 7 4.6348 -1.4428 6.9473 23 6 5.8491 -1.9130 6.8087 24 7 6.1887 -1.8695 5.5074 25 6 7.4686 -2.2811 4.9264 26 6 8.0988 -3.3721 5.7952 27 6 8.9738 -2.7288 6.8705 28 6 8.1308 -1.8356 7.7752 29 6 6.7287 -2.4316 7.9202 30 6 3.5776 -0.5698 1.3881 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6319 -1.1525 35 1 3.2471 -2.3966 -4.2422 36 1 0.5701 -0.4072 2.8408 37 1 1.4974 1.0624 2.4003 38 1 2.2943 -1.2451 4.1651 39 1 2.8210 0.4585 4.2307 40 1 3.1679 -0.6827 5.5650 41 1 8.1386 -1.4226 4.8790 42 1 7.3030 -2.6683 3.9210 43 1 7.3117 -3.9577 6.2701 44 1 8.7105 -4.0242 5.1718 45 1 9.4413 -3.5098 7.4701 46 1 9.7498 -2.1301 6.3938 47 1 8.0588 -0.8402 7.3370 48 1 8.5997 -1.7673 8.7568 49 1 6.3077 -2.1412 8.8828 50 1 6.7867 -3.5185 7.8614 51 1 3.8951 0.4189 1.0568 52 1 4.0878 -1.3445 0.8157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569814103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:22 Heat of formation + Delta-G solvation = 37.480444 kcal Electronic energy + Delta-G solvation = -31067.624981 eV Core-core repulsion = 27068.122137 eV Total energy + Delta-G solvation = -3999.502844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.65267 -39.82700 -37.71644 -37.64350 -35.26841 -33.93464 -32.60305 -31.31720 -30.67580 -29.89079 -28.60789 -28.08206 -26.30104 -25.01376 -23.96045 -23.93933 -21.93794 -21.60904 -20.42406 -20.21281 -19.67504 -19.32016 -17.49363 -16.91581 -16.64525 -16.24869 -15.99414 -15.61279 -15.20250 -15.14088 -14.71797 -14.35305 -14.10889 -13.88287 -13.76915 -13.47766 -13.29302 -13.12783 -13.05033 -12.73638 -12.65182 -12.35178 -12.17429 -12.10493 -12.02256 -11.49696 -11.38438 -11.32383 -11.26109 -11.02033 -10.86680 -10.78360 -10.59960 -10.53464 -10.41625 -10.22670 -9.92882 -9.85643 -9.77867 -9.61405 -8.89974 -8.69281 -8.49021 -6.95615 -5.74816 -3.03811 1.21912 2.26405 2.66632 3.14573 3.29599 3.45170 3.49754 3.50591 3.94311 4.13532 4.22786 4.30923 4.42676 4.59442 4.63037 4.67214 4.79885 4.86709 4.92162 4.92423 4.99588 5.06449 5.17847 5.28322 5.31240 5.37422 5.39880 5.46805 5.53089 5.55855 5.57667 5.63893 5.68819 5.80345 5.87712 5.89359 5.92894 5.99927 6.04800 6.16376 6.26789 6.31429 6.39444 6.41305 6.54351 6.63411 6.85721 6.88045 7.07654 7.52344 7.70913 7.75021 8.15515 8.43267 9.54569 10.11383 10.45723 11.47666 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.002355 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.093728 B =11888.338755 C =13188.897394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.101 4.101 14 H 0.083 0.917 15 C -0.125 4.125 16 C 0.091 3.909 17 N -0.604 5.604 18 C 0.604 3.396 19 O -0.545 6.545 20 C -0.079 4.079 21 C 0.023 3.977 22 N -0.496 5.496 23 C 0.227 3.773 24 N -0.416 5.416 25 C 0.100 3.900 26 C -0.141 4.141 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.038 4.038 30 C 0.124 3.876 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.188 0.812 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.700 -0.857 25.815 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.121 4.121 14 H 0.101 0.899 15 C -0.163 4.163 16 C -0.032 4.032 17 N -0.337 5.337 18 C 0.392 3.608 19 O -0.424 6.424 20 C -0.196 4.196 21 C -0.131 4.131 22 N -0.214 5.214 23 C -0.034 4.034 24 N -0.097 5.097 25 C -0.022 4.022 26 C -0.179 4.179 27 C -0.162 4.162 28 C -0.163 4.163 29 C -0.076 4.076 30 C 0.003 3.997 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.205 0.795 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.117 0.883 50 H 0.109 0.891 51 H 0.092 0.908 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.086 -0.849 25.957 26.920 hybrid contribution 0.470 0.148 -1.818 1.884 sum 7.556 -0.701 24.138 25.303 Atomic orbital electron populations 1.22442 0.99025 1.00917 1.00036 1.20151 0.91951 0.95162 0.85296 0.93267 1.42416 1.78179 1.10696 1.05267 1.19155 1.36686 0.93801 0.87294 0.91272 1.24728 1.02152 0.95946 0.98027 1.69644 1.50784 1.08644 1.28962 0.86300 0.77727 0.78638 0.83705 1.21300 1.21762 1.21331 1.22723 0.93421 1.00864 0.95107 0.89894 1.22714 0.97578 1.01688 0.94338 1.22451 0.85172 1.00044 0.95528 1.48152 1.10697 1.65698 1.09123 1.16333 0.82239 0.77474 0.84723 1.90815 1.35710 1.53240 1.62649 1.20696 0.90911 1.13927 0.94081 1.23286 0.99875 1.02462 0.87469 1.70118 1.07634 1.17479 1.26186 1.23425 0.93580 1.02389 0.84053 1.45236 1.12468 1.45007 1.06964 1.22188 0.81852 0.99052 0.99110 1.22059 1.00297 0.97615 0.97926 1.21621 0.98091 0.99516 0.97003 1.21602 0.94163 0.99629 1.00874 1.20257 0.92321 1.00667 0.94404 1.22363 0.96110 1.02867 0.78371 0.94292 0.92777 0.93498 0.78280 0.93485 0.89786 0.90163 0.90820 0.90969 0.79497 0.89445 0.87324 0.90171 0.89330 0.90965 0.91187 0.91572 0.90235 0.88316 0.89132 0.90838 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.27 37.16 0.34 -2.39 16 2 C 0.18 3.39 2.43 -67.93 -0.17 3.23 16 3 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 4 N -0.72 -17.43 4.97 -53.43 -0.27 -17.69 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.10 -1.53 2.67 -88.34 -0.24 -1.77 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -1.38 5.28 -24.90 -0.13 -1.51 16 16 C 0.09 0.99 5.01 -3.06 -0.02 0.97 16 17 N -0.60 -8.92 3.32 -171.89 -0.57 -9.49 16 18 C 0.60 9.82 7.81 -12.82 -0.10 9.72 16 19 O -0.55 -10.52 15.25 5.21 0.08 -10.44 16 20 C -0.08 -1.12 6.88 -82.21 -0.57 -1.68 16 21 C 0.02 0.29 10.37 -17.47 -0.18 0.11 16 22 N -0.50 -6.49 11.20 -10.47 -0.12 -6.61 16 23 C 0.23 2.58 6.83 -155.37 -1.06 1.52 16 24 N -0.42 -5.13 3.10 -109.84 -0.34 -5.47 16 25 C 0.10 1.03 5.82 -4.03 -0.02 1.00 16 26 C -0.14 -0.97 5.56 -26.80 -0.15 -1.12 16 27 C -0.12 -0.65 5.67 -27.06 -0.15 -0.81 16 28 C -0.12 -0.73 5.67 -26.95 -0.15 -0.88 16 29 C -0.04 -0.27 5.54 -27.75 -0.15 -0.43 16 30 C 0.12 2.09 6.22 -2.41 -0.01 2.07 16 31 H 0.04 0.52 7.28 -51.93 -0.38 0.14 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 0.79 8.11 -51.93 -0.42 0.36 16 37 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 38 H 0.07 0.72 6.78 -51.93 -0.35 0.36 16 39 H 0.07 0.67 7.11 -51.93 -0.37 0.30 16 40 H 0.19 1.91 4.47 -52.49 -0.23 1.68 16 41 H 0.09 0.87 7.81 -51.93 -0.41 0.46 16 42 H 0.11 1.35 6.67 -51.93 -0.35 1.00 16 43 H 0.08 0.58 5.68 -51.93 -0.30 0.28 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 47 H 0.07 0.50 7.85 -51.93 -0.41 0.09 16 48 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.54 6.30 -51.93 -0.33 0.22 16 51 H 0.07 1.30 7.99 -51.93 -0.41 0.89 16 52 H 0.08 1.69 8.08 -51.93 -0.42 1.27 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -33.77 397.44 -10.98 -44.75 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.45 Total: 7.96 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.00 Total: 0.98 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.57 Total: -66.64 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.77 -10.98 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569814103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.229 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds