Wall clock time and date at job start Wed Apr 1 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47449 * 2 1 4 4 N 1.46492 * 109.47348 * 239.99612 * 2 1 3 5 5 C 1.36936 * 119.99946 * 85.00149 * 4 2 1 6 6 H 1.07999 * 119.99889 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00219 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99853 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47035 * 60.00125 * 9 7 5 11 11 H 1.48498 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47203 * 300.00200 * 9 7 5 13 13 C 1.53009 * 109.47019 * 119.99893 * 2 1 3 14 14 H 1.08992 * 110.88411 * 63.88060 * 13 2 1 15 15 C 1.55161 * 111.00474 * 299.99873 * 13 2 1 16 16 C 1.54320 * 102.94191 * 206.38840 * 15 13 2 17 17 N 1.47024 * 107.27356 * 22.19046 * 16 15 13 18 18 C 1.34767 * 125.64773 * 181.02441 * 17 16 15 19 19 O 1.21679 * 120.00002 * 184.74878 * 18 17 16 20 20 C 1.46769 * 120.00072 * 4.74995 * 18 17 16 21 21 C 1.36689 * 126.87902 * 354.23735 * 20 18 17 22 22 N 1.33309 * 107.79322 * 179.75826 * 21 20 18 23 23 C 1.30949 * 109.75429 * 359.76826 * 22 21 20 24 24 N 1.34554 * 108.95270 * 0.63416 * 23 22 21 25 25 C 1.46470 * 126.52065 * 178.93485 * 24 23 22 26 26 C 1.53046 * 109.56784 * 28.18290 * 25 24 23 27 27 C 1.52826 * 109.58109 * 270.60207 * 26 25 24 28 28 C 1.52537 * 110.32659 * 61.27145 * 27 26 25 29 29 C 1.50935 * 125.86127 * 181.06803 * 23 22 21 30 30 C 1.47421 * 108.70197 * 1.28970 * 17 16 15 31 31 H 1.08998 * 109.46952 * 300.00244 * 1 2 3 32 32 H 1.08999 * 109.47237 * 59.99787 * 1 2 3 33 33 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00306 * 265.00204 * 4 2 1 35 35 H 0.97001 * 120.00297 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.71469 * 88.01832 * 15 13 2 37 37 H 1.09003 * 110.86855 * 324.82409 * 15 13 2 38 38 H 1.09004 * 109.87765 * 262.77643 * 16 15 13 39 39 H 1.08996 * 110.00886 * 141.68580 * 16 15 13 40 40 H 1.07998 * 126.10448 * 359.75734 * 21 20 18 41 41 H 1.09000 * 109.45452 * 268.15729 * 25 24 23 42 42 H 1.09000 * 109.44528 * 148.20216 * 25 24 23 43 43 H 1.08999 * 109.45088 * 30.63624 * 26 25 24 44 44 H 1.09001 * 109.44370 * 150.57933 * 26 25 24 45 45 H 1.08998 * 109.32887 * 181.49124 * 27 26 25 46 46 H 1.08997 * 109.33288 * 300.98603 * 27 26 25 47 47 H 1.09002 * 109.44047 * 273.36284 * 28 27 26 48 48 H 1.09003 * 109.45802 * 153.40264 * 28 27 26 49 49 H 1.09002 * 109.49645 * 346.47182 * 29 23 22 50 50 H 1.09002 * 109.50361 * 106.53865 * 29 23 22 51 51 H 1.08999 * 110.37062 * 94.48061 * 30 17 16 52 52 H 1.08999 * 110.37051 * 216.80711 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1960 5 6 2.1492 -0.0076 -2.3756 6 1 1.8919 1.0402 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9391 -3.4500 9 14 2.7892 0.2696 -5.1185 10 1 3.7446 1.3920 -4.9377 11 1 3.2983 -0.6488 -6.1685 12 1 1.4667 0.8064 -5.5284 13 6 2.0400 -0.7213 1.2493 14 1 1.7468 -1.7710 1.2388 15 6 1.5425 -0.0177 2.5397 16 6 2.6244 -0.3900 3.5753 17 7 3.8422 -0.7379 2.8286 18 6 5.0089 -1.1384 3.3714 19 8 5.9804 -1.3182 2.6612 20 6 5.1076 -1.3579 4.8193 21 6 4.1471 -1.0963 5.7560 22 7 4.6348 -1.4428 6.9473 23 6 5.8491 -1.9130 6.8087 24 7 6.1887 -1.8695 5.5074 25 6 7.4686 -2.2811 4.9264 26 6 8.0988 -3.3721 5.7952 27 6 8.9738 -2.7288 6.8705 28 6 8.1308 -1.8356 7.7752 29 6 6.7287 -2.4316 7.9202 30 6 3.5776 -0.5698 1.3881 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6319 -1.1525 35 1 3.2471 -2.3966 -4.2422 36 1 0.5701 -0.4072 2.8408 37 1 1.4974 1.0624 2.4003 38 1 2.2943 -1.2451 4.1651 39 1 2.8210 0.4585 4.2307 40 1 3.1679 -0.6827 5.5650 41 1 8.1386 -1.4226 4.8790 42 1 7.3030 -2.6683 3.9210 43 1 7.3117 -3.9577 6.2701 44 1 8.7105 -4.0242 5.1718 45 1 9.4413 -3.5098 7.4701 46 1 9.7498 -2.1301 6.3938 47 1 8.0588 -0.8402 7.3370 48 1 8.5997 -1.7673 8.7568 49 1 6.3077 -2.1412 8.8828 50 1 6.7867 -3.5185 7.8614 51 1 3.8951 0.4189 1.0568 52 1 4.0878 -1.3445 0.8157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569814103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:21 Heat of formation + Delta-G solvation = 16.201994 kcal Electronic energy + Delta-G solvation = -31068.547684 eV Core-core repulsion = 27068.122137 eV Total energy + Delta-G solvation = -4000.425547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.57897 -41.02684 -39.02768 -38.30881 -36.84836 -34.74649 -34.36059 -32.43042 -31.84726 -30.87159 -30.05859 -29.35128 -27.10829 -25.93547 -25.80018 -24.91513 -23.18483 -22.74403 -21.30880 -21.08912 -20.87936 -20.31305 -19.18415 -18.29274 -17.57765 -17.47834 -17.00992 -16.60964 -16.40036 -16.08614 -15.81369 -15.61010 -15.39757 -15.13669 -14.93001 -14.58508 -14.50496 -14.20655 -14.04180 -13.85883 -13.76439 -13.57071 -13.37083 -13.13892 -13.01852 -12.79591 -12.71554 -12.48365 -12.37617 -12.25101 -12.00260 -11.95308 -11.78915 -11.72579 -11.58040 -11.52964 -11.35977 -11.33751 -11.00907 -10.91466 -10.78479 -9.84483 -9.52385 -8.98155 -7.92126 -5.19356 0.18720 1.29263 1.45800 1.48641 1.54247 1.68895 2.06869 2.16956 2.56815 3.19979 3.29281 3.41869 3.52192 3.59700 3.63052 3.72249 3.79965 3.86380 4.00554 4.14014 4.15545 4.19975 4.24244 4.26358 4.28912 4.42150 4.53837 4.54535 4.65642 4.66066 4.72498 4.78633 4.84312 4.84521 4.87703 4.96222 4.99107 5.04758 5.12898 5.15094 5.15899 5.21774 5.26132 5.32523 5.33786 5.42448 5.43634 5.54502 5.67187 6.01813 6.30164 6.35114 6.77330 6.95614 7.35960 8.14248 8.34994 9.31426 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.002355 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.093728 B =11888.338755 C =13188.897394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.047 0.953 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.076 0.924 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.276 1.276 13 C -0.091 4.091 14 H 0.076 0.924 15 C -0.111 4.111 16 C 0.086 3.914 17 N -0.603 5.603 18 C 0.596 3.404 19 O -0.592 6.592 20 C -0.113 4.113 21 C 0.037 3.963 22 N -0.519 5.519 23 C 0.237 3.763 24 N -0.423 5.423 25 C 0.098 3.902 26 C -0.134 4.134 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.039 4.039 30 C 0.129 3.871 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.212 0.788 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.105 0.895 49 H 0.111 0.889 50 H 0.109 0.891 51 H 0.059 0.941 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 -0.003 29.237 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.094 0.906 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.202 1.202 13 C -0.111 4.111 14 H 0.095 0.905 15 C -0.149 4.149 16 C -0.035 4.035 17 N -0.334 5.334 18 C 0.387 3.613 19 O -0.475 6.475 20 C -0.229 4.229 21 C -0.117 4.117 22 N -0.238 5.238 23 C -0.025 4.025 24 N -0.103 5.103 25 C -0.023 4.023 26 C -0.171 4.171 27 C -0.157 4.157 28 C -0.158 4.158 29 C -0.077 4.077 30 C 0.007 3.993 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.134 0.866 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.228 0.772 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.123 0.877 49 H 0.129 0.871 50 H 0.127 0.873 51 H 0.077 0.923 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.110 0.057 29.431 30.058 hybrid contribution 0.763 -0.082 -2.769 2.873 sum 6.873 -0.026 26.662 27.533 Atomic orbital electron populations 1.22275 0.96768 1.01008 1.01205 1.20420 0.93315 0.94732 0.84472 0.93516 1.42660 1.78499 1.10226 1.06411 1.19563 1.34309 0.94114 0.88280 0.90563 1.25513 1.03409 0.96839 1.01421 1.69812 1.52992 1.10257 1.29259 0.85292 0.77967 0.77263 0.79769 1.20739 1.22603 1.20197 1.22532 0.91892 1.00745 0.95978 0.90530 1.22755 0.98818 1.02138 0.91198 1.22762 0.83273 1.01848 0.95597 1.48185 1.11666 1.65138 1.08446 1.16755 0.81977 0.76884 0.85694 1.90779 1.37409 1.55402 1.63901 1.20522 0.92635 1.16719 0.93020 1.23686 1.00234 1.00896 0.86899 1.70190 1.08590 1.18782 1.26205 1.24301 0.93484 1.00295 0.84392 1.45436 1.12613 1.44920 1.07358 1.22251 0.81456 1.00043 0.98581 1.22067 1.00475 0.96510 0.98067 1.21618 0.97599 1.00019 0.96495 1.21596 0.93575 0.98440 1.02176 1.20521 0.92283 1.01674 0.93234 1.22095 0.97226 1.00384 0.79615 0.89828 0.94827 0.93939 0.79903 0.94325 0.86608 0.88793 0.88875 0.88448 0.77187 0.89686 0.90335 0.90110 0.88262 0.88551 0.91067 0.93606 0.87697 0.87107 0.87342 0.92274 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.27 71.98 0.67 -4.12 16 2 C 0.18 6.49 2.43 45.00 0.11 6.60 16 3 H 0.05 1.73 8.01 -2.39 -0.02 1.71 16 4 N -0.74 -36.53 4.97 -322.94 -1.61 -38.13 16 5 C -0.23 -12.75 9.93 84.04 0.83 -11.91 16 6 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 8 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 9 Si 0.97 47.12 29.55 68.60 2.03 49.14 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C -0.09 -2.72 2.67 -9.32 -0.02 -2.75 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.11 -2.07 5.28 31.78 0.17 -1.90 16 16 C 0.09 1.65 5.01 86.73 0.43 2.09 16 17 N -0.60 -18.03 3.32 -815.97 -2.71 -20.75 16 18 C 0.60 20.33 7.81 86.47 0.68 21.01 16 19 O -0.59 -24.84 15.25 -4.28 -0.07 -24.91 16 20 C -0.11 -3.20 6.88 40.04 0.28 -2.93 16 21 C 0.04 0.89 10.37 84.11 0.87 1.76 16 22 N -0.52 -12.65 11.20 -187.05 -2.10 -14.75 16 23 C 0.24 5.05 6.83 138.23 0.94 5.99 16 24 N -0.42 -10.45 3.10 -501.43 -1.55 -12.00 16 25 C 0.10 2.11 5.82 86.40 0.50 2.62 16 26 C -0.13 -1.69 5.56 30.55 0.17 -1.52 16 27 C -0.12 -0.96 5.67 30.38 0.17 -0.79 16 28 C -0.12 -1.09 5.67 30.45 0.17 -0.92 16 29 C -0.04 -0.45 5.54 29.94 0.17 -0.29 16 30 C 0.13 4.57 6.22 86.93 0.54 5.11 16 31 H 0.08 1.88 7.28 -2.39 -0.02 1.86 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.37 20.12 7.80 -92.70 -0.72 19.40 16 35 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.12 1.54 8.11 -2.39 -0.02 1.52 16 37 H 0.09 1.57 8.04 -2.39 -0.02 1.55 16 38 H 0.09 1.48 6.78 -2.38 -0.02 1.47 16 39 H 0.10 1.45 7.11 -2.39 -0.02 1.44 16 40 H 0.21 3.65 4.47 -2.91 -0.01 3.64 16 41 H 0.08 1.80 7.81 -2.39 -0.02 1.79 16 42 H 0.08 2.17 6.67 -2.39 -0.02 2.15 16 43 H 0.08 1.02 5.68 -2.39 -0.01 1.01 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 47 H 0.05 0.62 7.85 -2.39 -0.02 0.60 16 48 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.11 0.95 6.30 -2.39 -0.02 0.93 16 51 H 0.06 2.22 7.99 -2.39 -0.02 2.20 16 52 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 Total: -1.00 -78.79 397.44 1.63 -77.16 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.21 Total: 31.05 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 7.15 Total: 13.86 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -7.69 Total: -146.30 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.91 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -78.79 1.63 -77.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569814103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.362 kcal (2) G-P(sol) polarization free energy of solvation -78.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds