Wall clock time and date at job start Wed Apr 1 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.47020 * 2 1 4 4 N 1.46502 * 109.46652 * 240.00244 * 2 1 3 5 5 C 1.36932 * 119.99998 * 85.00474 * 4 2 1 6 6 H 1.08003 * 119.99933 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00098 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47394 * 89.99701 * 9 7 5 11 11 H 1.48504 * 109.47234 * 210.00138 * 9 7 5 12 12 H 1.48499 * 109.47494 * 329.99878 * 9 7 5 13 13 C 1.52999 * 109.46939 * 120.00435 * 2 1 3 14 14 H 1.08996 * 110.91716 * 63.90515 * 13 2 1 15 15 C 1.55157 * 111.00177 * 187.80449 * 13 2 1 16 16 C 1.54331 * 103.02165 * 153.37811 * 15 13 2 17 17 N 1.47021 * 107.26408 * 338.14179 * 16 15 13 18 18 C 1.34783 * 125.64860 * 178.84778 * 17 16 15 19 19 O 1.21274 * 120.00211 * 179.68961 * 18 17 16 20 20 C 1.50700 * 119.99569 * 359.69182 * 18 17 16 21 21 C 1.50702 * 109.46921 * 179.97438 * 20 18 17 22 22 C 1.40057 * 126.10089 * 264.97733 * 21 20 18 23 23 N 1.31030 * 108.25511 * 180.02562 * 22 21 20 24 24 N 1.39650 * 108.12574 * 359.95110 * 23 22 21 25 25 C 1.34745 * 126.10233 * 84.99624 * 21 20 18 26 26 C 1.50870 * 127.76308 * 0.02883 * 25 21 20 27 27 C 1.53446 * 108.16905 * 164.12806 * 26 25 21 28 28 C 1.53152 * 109.18549 * 48.60163 * 27 26 25 29 29 C 1.46589 * 127.54918 * 180.02562 * 24 23 22 30 30 C 1.47418 * 108.70449 * 358.58420 * 17 16 15 31 31 H 1.08988 * 109.46904 * 299.99766 * 1 2 3 32 32 H 1.09001 * 109.46948 * 59.99690 * 1 2 3 33 33 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 34 34 H 0.96994 * 120.00062 * 264.99429 * 4 2 1 35 35 H 0.96995 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.72317 * 271.93775 * 15 13 2 37 37 H 1.09003 * 110.71918 * 35.21264 * 15 13 2 38 38 H 1.09003 * 109.99662 * 218.66452 * 16 15 13 39 39 H 1.08997 * 109.77759 * 97.49506 * 16 15 13 40 40 H 1.09001 * 109.47209 * 60.00144 * 20 18 17 41 41 H 1.08999 * 109.47197 * 299.99832 * 20 18 17 42 42 H 1.08005 * 125.87432 * 0.03086 * 22 21 20 43 43 H 1.09004 * 109.72179 * 44.46295 * 26 25 21 44 44 H 1.08999 * 109.72497 * 283.79943 * 26 25 21 45 45 H 1.09002 * 109.51531 * 168.51471 * 27 26 25 46 46 H 1.08997 * 109.51843 * 288.62608 * 27 26 25 47 47 H 1.09005 * 109.45565 * 50.59872 * 28 27 26 48 48 H 1.09000 * 109.45377 * 170.56000 * 28 27 26 49 49 H 1.09000 * 109.58553 * 42.92250 * 29 24 23 50 50 H 1.09001 * 109.57920 * 282.52117 * 29 24 23 51 51 H 1.09005 * 110.37093 * 143.19591 * 30 17 16 52 52 H 1.09001 * 110.36547 * 265.51663 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8920 1.0404 -2.4242 7 6 2.6122 -0.6616 -3.5091 8 7 2.9261 -1.9384 -3.4499 9 14 2.7900 0.2702 -5.1183 10 1 4.1519 0.8562 -5.2032 11 1 2.5802 -0.6615 -6.2556 12 1 1.7793 1.3566 -5.1756 13 6 2.0400 -0.7213 1.2492 14 1 1.7475 -1.7713 1.2389 15 6 3.5784 -0.5740 1.3874 16 6 3.8052 -0.7060 2.9082 17 7 2.5332 -0.3789 3.5690 18 6 2.3106 -0.3992 4.8982 19 8 1.2183 -0.1040 5.3346 20 6 3.4191 -0.7886 5.8419 21 6 2.9145 -0.7304 7.2607 22 6 3.0469 0.3516 8.1400 23 7 2.4847 0.0269 9.2781 24 7 1.9773 -1.2686 9.1580 25 6 2.2557 -1.7103 7.9099 26 6 1.8735 -3.0720 7.3844 27 6 1.5072 -3.9609 8.5803 28 6 0.5335 -3.2053 9.4895 29 6 1.2658 -2.0474 10.1759 30 6 1.5434 -0.0190 2.5375 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 3.2500 -2.3955 -4.2417 36 1 4.0921 -1.3698 0.8480 37 1 3.9052 0.4047 1.0360 38 1 4.5802 -0.0109 3.2312 39 1 4.0966 -1.7280 3.1503 40 1 4.2547 -0.0984 5.7253 41 1 3.7504 -1.8019 5.6149 42 1 3.5294 1.2921 7.9181 43 1 2.7151 -3.5080 6.8461 44 1 1.0164 -2.9815 6.7171 45 1 1.0359 -4.8763 8.2228 46 1 2.4095 -4.2100 9.1388 47 1 -0.2893 -2.8116 8.8926 48 1 0.1407 -3.8852 10.2454 49 1 0.5439 -1.4093 10.6857 50 1 1.9798 -2.4437 10.8979 51 1 0.5558 -0.3882 2.8142 52 1 1.5194 1.0614 2.3955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569814975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:28 Heat of formation + Delta-G solvation = 40.667336 kcal Electronic energy + Delta-G solvation = -30496.768702 eV Core-core repulsion = 26497.404052 eV Total energy + Delta-G solvation = -3999.364650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.77745 -39.87143 -37.73596 -36.80012 -35.15858 -33.57107 -32.44050 -30.96936 -30.52472 -30.16750 -29.20958 -27.55697 -26.38824 -24.58039 -24.32542 -23.00063 -22.44048 -21.41028 -20.82299 -19.61208 -19.31981 -18.77509 -17.29660 -16.90589 -16.65381 -16.03213 -16.00377 -15.35354 -14.83147 -14.79215 -14.67305 -14.42524 -14.09577 -14.00937 -13.76836 -13.48990 -13.27324 -13.06638 -12.87981 -12.58350 -12.52283 -12.44499 -12.21368 -12.11897 -11.89584 -11.70349 -11.49468 -11.42129 -11.33605 -11.20645 -10.88634 -10.71666 -10.66718 -10.55276 -10.37825 -10.20030 -9.89683 -9.74353 -9.63248 -9.32536 -8.91940 -8.51099 -8.44772 -6.96882 -5.77775 -3.05915 1.73807 2.30050 2.57327 2.75260 3.22842 3.42450 3.48422 3.49466 4.01255 4.20713 4.29436 4.36735 4.53994 4.63756 4.69581 4.80818 4.84704 4.92040 4.94564 5.05885 5.08798 5.14270 5.19333 5.21785 5.34356 5.37225 5.41806 5.46232 5.48611 5.54106 5.57623 5.72215 5.73653 5.76033 5.88673 5.94014 6.01034 6.02245 6.10085 6.23668 6.29653 6.40243 6.48332 6.52978 6.59935 6.65541 6.85752 6.88563 7.10640 7.60544 7.64971 7.69882 8.30011 8.40944 9.52388 10.09702 10.44728 11.44887 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.001922 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.892283 B =14563.646210 C =14792.634402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.101 4.101 14 H 0.080 0.920 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.620 5.620 18 C 0.526 3.474 19 O -0.538 6.538 20 C -0.054 4.054 21 C -0.218 4.218 22 C 0.061 3.939 23 N -0.299 5.299 24 N -0.371 5.371 25 C 0.105 3.895 26 C -0.062 4.062 27 C -0.125 4.125 28 C -0.138 4.138 29 C 0.135 3.865 30 C 0.115 3.885 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.180 0.820 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -3.698 26.584 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.121 4.121 14 H 0.098 0.902 15 C -0.155 4.155 16 C -0.025 4.025 17 N -0.354 5.354 18 C 0.314 3.686 19 O -0.415 6.415 20 C -0.095 4.095 21 C -0.230 4.230 22 C -0.125 4.125 23 N -0.119 5.119 24 N -0.154 5.154 25 C -0.023 4.023 26 C -0.101 4.101 27 C -0.163 4.163 28 C -0.176 4.176 29 C 0.014 3.986 30 C -0.008 4.008 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.197 0.803 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.099 0.901 51 H 0.093 0.907 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.066 -3.094 28.105 28.275 hybrid contribution 0.388 0.009 -1.852 1.892 sum 0.454 -3.085 26.253 26.438 Atomic orbital electron populations 1.22495 0.99309 1.00932 1.00063 1.20133 0.91755 0.95150 0.85471 0.93314 1.42369 1.78155 1.10631 1.05147 1.19219 1.36235 0.93838 0.87306 0.91247 1.24715 1.02334 0.95964 0.97987 1.69651 1.51042 1.08633 1.28867 0.86223 0.77756 0.78605 0.83804 1.21786 1.21869 1.20832 1.22646 0.94951 1.00458 0.94085 0.90159 1.22587 0.96648 1.03897 0.92362 1.22164 0.85828 1.00219 0.94302 1.48639 1.13642 1.67908 1.05256 1.20377 0.89700 0.77547 0.80979 1.90693 1.25779 1.48777 1.76233 1.19845 0.96783 1.03584 0.89265 1.18964 1.11949 0.95364 0.96687 1.23753 0.99064 0.99143 0.90565 1.77245 1.17598 0.93980 1.23048 1.48476 1.44966 1.11514 1.10452 1.20653 0.98318 0.96975 0.86309 1.20484 1.02863 0.88845 0.97880 1.21670 0.99685 0.98651 0.96289 1.21967 0.98904 0.96517 1.00234 1.21744 0.95631 0.92063 0.89181 1.22273 0.92514 0.99538 0.86471 0.94360 0.92778 0.93487 0.78315 0.93583 0.89500 0.90385 0.91601 0.91613 0.88307 0.88731 0.80269 0.89112 0.89071 0.90130 0.91194 0.90422 0.89055 0.89148 0.90097 0.90733 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.27 37.16 0.34 -2.63 16 2 C 0.19 3.44 2.42 -67.93 -0.16 3.28 16 3 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16 4 N -0.72 -16.98 4.97 -53.42 -0.27 -17.24 16 5 C -0.23 -6.25 9.93 -15.06 -0.15 -6.40 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 9 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.10 -1.54 2.66 -88.47 -0.24 -1.78 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.60 6.27 -24.89 -0.16 -1.76 16 16 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 17 N -0.62 -8.03 3.33 -170.52 -0.57 -8.59 16 18 C 0.53 7.12 7.84 -10.98 -0.09 7.03 16 19 O -0.54 -9.44 16.29 5.56 0.09 -9.35 16 20 C -0.05 -0.54 5.18 -29.03 -0.15 -0.69 16 21 C -0.22 -2.55 4.59 -105.18 -0.48 -3.04 16 22 C 0.06 0.74 11.97 -17.21 -0.21 0.53 16 23 N -0.30 -3.96 12.62 30.70 0.39 -3.58 16 24 N -0.37 -4.22 4.04 -56.96 -0.23 -4.45 16 25 C 0.10 1.16 6.59 -82.22 -0.54 0.62 16 26 C -0.06 -0.51 6.02 -27.57 -0.17 -0.67 16 27 C -0.13 -0.72 5.97 -26.42 -0.16 -0.88 16 28 C -0.14 -0.77 5.93 -26.53 -0.16 -0.93 16 29 C 0.13 1.00 7.28 -3.87 -0.03 0.98 16 30 C 0.11 1.64 5.27 -2.53 -0.01 1.62 16 31 H 0.04 0.58 7.23 -51.94 -0.38 0.21 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.13 7.99 -51.93 -0.42 0.71 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.76 7.89 -51.93 -0.41 0.35 16 42 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.09 0.62 7.93 -51.93 -0.41 0.20 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 47 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 48 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 52 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 415.32 15.07 6.26 6.26 Total: -1.00 -34.21 415.32 -10.15 -44.36 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -9.06 Total: 6.41 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.47 Total: -4.16 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.05 Total: -60.46 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.21 -10.15 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569814975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.032 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds