Wall clock time and date at job start Wed Apr 1 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.47020 * 2 1 4 4 N 1.46502 * 109.46652 * 240.00244 * 2 1 3 5 5 C 1.36932 * 119.99998 * 85.00474 * 4 2 1 6 6 H 1.08003 * 119.99933 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00098 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47394 * 89.99701 * 9 7 5 11 11 H 1.48504 * 109.47234 * 210.00138 * 9 7 5 12 12 H 1.48499 * 109.47494 * 329.99878 * 9 7 5 13 13 C 1.52999 * 109.46939 * 120.00435 * 2 1 3 14 14 H 1.08996 * 110.91716 * 63.90515 * 13 2 1 15 15 C 1.55157 * 111.00177 * 187.80449 * 13 2 1 16 16 C 1.54331 * 103.02165 * 153.37811 * 15 13 2 17 17 N 1.47021 * 107.26408 * 338.14179 * 16 15 13 18 18 C 1.34783 * 125.64860 * 178.84778 * 17 16 15 19 19 O 1.21274 * 120.00211 * 179.68961 * 18 17 16 20 20 C 1.50700 * 119.99569 * 359.69182 * 18 17 16 21 21 C 1.50702 * 109.46921 * 179.97438 * 20 18 17 22 22 C 1.40057 * 126.10089 * 264.97733 * 21 20 18 23 23 N 1.31030 * 108.25511 * 180.02562 * 22 21 20 24 24 N 1.39650 * 108.12574 * 359.95110 * 23 22 21 25 25 C 1.34745 * 126.10233 * 84.99624 * 21 20 18 26 26 C 1.50870 * 127.76308 * 0.02883 * 25 21 20 27 27 C 1.53446 * 108.16905 * 164.12806 * 26 25 21 28 28 C 1.53152 * 109.18549 * 48.60163 * 27 26 25 29 29 C 1.46589 * 127.54918 * 180.02562 * 24 23 22 30 30 C 1.47418 * 108.70449 * 358.58420 * 17 16 15 31 31 H 1.08988 * 109.46904 * 299.99766 * 1 2 3 32 32 H 1.09001 * 109.46948 * 59.99690 * 1 2 3 33 33 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 34 34 H 0.96994 * 120.00062 * 264.99429 * 4 2 1 35 35 H 0.96995 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.72317 * 271.93775 * 15 13 2 37 37 H 1.09003 * 110.71918 * 35.21264 * 15 13 2 38 38 H 1.09003 * 109.99662 * 218.66452 * 16 15 13 39 39 H 1.08997 * 109.77759 * 97.49506 * 16 15 13 40 40 H 1.09001 * 109.47209 * 60.00144 * 20 18 17 41 41 H 1.08999 * 109.47197 * 299.99832 * 20 18 17 42 42 H 1.08005 * 125.87432 * 0.03086 * 22 21 20 43 43 H 1.09004 * 109.72179 * 44.46295 * 26 25 21 44 44 H 1.08999 * 109.72497 * 283.79943 * 26 25 21 45 45 H 1.09002 * 109.51531 * 168.51471 * 27 26 25 46 46 H 1.08997 * 109.51843 * 288.62608 * 27 26 25 47 47 H 1.09005 * 109.45565 * 50.59872 * 28 27 26 48 48 H 1.09000 * 109.45377 * 170.56000 * 28 27 26 49 49 H 1.09000 * 109.58553 * 42.92250 * 29 24 23 50 50 H 1.09001 * 109.57920 * 282.52117 * 29 24 23 51 51 H 1.09005 * 110.37093 * 143.19591 * 30 17 16 52 52 H 1.09001 * 110.36547 * 265.51663 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8920 1.0404 -2.4242 7 6 2.6122 -0.6616 -3.5091 8 7 2.9261 -1.9384 -3.4499 9 14 2.7900 0.2702 -5.1183 10 1 4.1519 0.8562 -5.2032 11 1 2.5802 -0.6615 -6.2556 12 1 1.7793 1.3566 -5.1756 13 6 2.0400 -0.7213 1.2492 14 1 1.7475 -1.7713 1.2389 15 6 3.5784 -0.5740 1.3874 16 6 3.8052 -0.7060 2.9082 17 7 2.5332 -0.3789 3.5690 18 6 2.3106 -0.3992 4.8982 19 8 1.2183 -0.1040 5.3346 20 6 3.4191 -0.7886 5.8419 21 6 2.9145 -0.7304 7.2607 22 6 3.0469 0.3516 8.1400 23 7 2.4847 0.0269 9.2781 24 7 1.9773 -1.2686 9.1580 25 6 2.2557 -1.7103 7.9099 26 6 1.8735 -3.0720 7.3844 27 6 1.5072 -3.9609 8.5803 28 6 0.5335 -3.2053 9.4895 29 6 1.2658 -2.0474 10.1759 30 6 1.5434 -0.0190 2.5375 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 3.2500 -2.3955 -4.2417 36 1 4.0921 -1.3698 0.8480 37 1 3.9052 0.4047 1.0360 38 1 4.5802 -0.0109 3.2312 39 1 4.0966 -1.7280 3.1503 40 1 4.2547 -0.0984 5.7253 41 1 3.7504 -1.8019 5.6149 42 1 3.5294 1.2921 7.9181 43 1 2.7151 -3.5080 6.8461 44 1 1.0164 -2.9815 6.7171 45 1 1.0359 -4.8763 8.2228 46 1 2.4095 -4.2100 9.1388 47 1 -0.2893 -2.8116 8.8926 48 1 0.1407 -3.8852 10.2454 49 1 0.5439 -1.4093 10.6857 50 1 1.9798 -2.4437 10.8979 51 1 0.5558 -0.3882 2.8142 52 1 1.5194 1.0614 2.3955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569814975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:26 Heat of formation + Delta-G solvation = 19.844039 kcal Electronic energy + Delta-G solvation = -30497.671668 eV Core-core repulsion = 26497.404052 eV Total energy + Delta-G solvation = -4000.267616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.55607 -40.95950 -38.96285 -37.40195 -36.71310 -34.42247 -34.12075 -32.11448 -31.29394 -31.05092 -30.73064 -28.84199 -27.29826 -26.07754 -25.14546 -24.30387 -23.12846 -22.71497 -21.65037 -21.03122 -20.16043 -19.58197 -19.10621 -18.04731 -17.58532 -17.12356 -16.73785 -16.51692 -16.16343 -15.61243 -15.47976 -15.41384 -15.26373 -14.99633 -14.77798 -14.69135 -14.56929 -14.10156 -13.96665 -13.78882 -13.72117 -13.46497 -13.34004 -13.17222 -12.89442 -12.86638 -12.74865 -12.69170 -12.28534 -12.15934 -11.99034 -11.93423 -11.90867 -11.86915 -11.61405 -11.52395 -11.46252 -11.33263 -10.91539 -10.84381 -10.13227 -9.56772 -9.27009 -8.94963 -7.88990 -5.15579 0.93056 1.50469 1.50788 1.58787 1.60384 1.70319 1.74028 2.24668 2.59976 3.43674 3.44151 3.52223 3.65645 3.75937 3.78450 3.81031 3.87131 3.96114 4.05823 4.22164 4.28893 4.30613 4.37376 4.40488 4.45068 4.48509 4.55280 4.57106 4.65333 4.68386 4.74795 4.79680 4.81470 4.87953 4.92513 4.95698 5.00590 5.03074 5.06570 5.10330 5.23934 5.25116 5.25425 5.29392 5.40932 5.42636 5.57376 5.63056 5.72172 6.14569 6.33500 6.64461 6.77657 7.27169 7.40495 8.16593 8.40537 9.34240 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.001922 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.892283 B =14563.646210 C =14792.634402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.046 0.954 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.072 0.928 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.274 1.274 13 C -0.092 4.092 14 H 0.075 0.925 15 C -0.115 4.115 16 C 0.104 3.896 17 N -0.619 5.619 18 C 0.525 3.475 19 O -0.585 6.585 20 C -0.044 4.044 21 C -0.238 4.238 22 C 0.048 3.952 23 N -0.336 5.336 24 N -0.377 5.377 25 C 0.097 3.903 26 C -0.063 4.063 27 C -0.121 4.121 28 C -0.132 4.132 29 C 0.124 3.876 30 C 0.121 3.879 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.197 0.803 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.121 0.879 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -4.194 27.831 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.090 0.910 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.199 1.199 13 C -0.112 4.112 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.018 4.018 17 N -0.353 5.353 18 C 0.316 3.684 19 O -0.465 6.465 20 C -0.084 4.084 21 C -0.250 4.250 22 C -0.137 4.137 23 N -0.156 5.156 24 N -0.161 5.161 25 C -0.031 4.031 26 C -0.102 4.102 27 C -0.159 4.159 28 C -0.170 4.170 29 C 0.004 3.996 30 C -0.002 4.002 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.213 0.787 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.139 0.861 49 H 0.108 0.892 50 H 0.115 0.885 51 H 0.083 0.917 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.936 -3.561 29.383 29.613 hybrid contribution 0.046 0.202 -2.167 2.176 sum 0.982 -3.359 27.216 27.440 Atomic orbital electron populations 1.22370 0.98446 1.00738 1.00417 1.20299 0.92186 0.94908 0.85261 0.93645 1.42504 1.78284 1.10266 1.05899 1.19544 1.34335 0.94006 0.88344 0.91008 1.25425 1.03393 0.96827 1.01022 1.69791 1.52824 1.09981 1.29220 0.85263 0.77790 0.77427 0.80028 1.21467 1.22609 1.19918 1.22419 0.96301 0.99654 0.92852 0.90651 1.22522 0.95038 1.03043 0.94699 1.22251 0.85305 1.02516 0.91708 1.48683 1.13963 1.67534 1.05073 1.21018 0.89886 0.76433 0.81104 1.90676 1.27913 1.50951 1.76940 1.19887 0.95779 1.05558 0.87213 1.19276 1.12744 0.95455 0.97514 1.24159 0.98965 1.00066 0.90558 1.77159 1.18898 0.95465 1.24121 1.48835 1.44760 1.11140 1.11338 1.21194 0.97570 0.98080 0.86250 1.20599 1.02858 0.87987 0.98755 1.21686 1.00161 0.98668 0.95363 1.21984 0.98134 0.96219 1.00714 1.22090 0.96017 0.92380 0.89147 1.22071 0.92579 0.99205 0.86383 0.91779 0.94575 0.93945 0.79424 0.94218 0.90429 0.91245 0.88927 0.89157 0.85843 0.86213 0.78669 0.87493 0.90514 0.88365 0.90361 0.92060 0.86099 0.89247 0.88483 0.91739 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 9.27 71.99 0.67 -4.93 16 2 C 0.18 6.71 2.42 44.99 0.11 6.82 16 3 H 0.05 1.71 8.02 -2.39 -0.02 1.70 16 4 N -0.73 -34.47 4.97 -322.93 -1.61 -36.08 16 5 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 7 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 8 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 9 Si 0.96 45.30 29.55 68.60 2.03 47.33 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C -0.09 -2.73 2.66 -9.40 -0.02 -2.75 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.12 -2.98 6.27 31.79 0.20 -2.78 16 16 C 0.10 1.94 6.49 86.73 0.56 2.50 16 17 N -0.62 -14.71 3.33 -811.79 -2.70 -17.41 16 18 C 0.53 13.31 7.84 87.66 0.69 14.00 16 19 O -0.58 -20.30 16.29 -3.01 -0.05 -20.35 16 20 C -0.04 -0.76 5.18 29.10 0.15 -0.61 16 21 C -0.24 -5.28 4.59 -20.22 -0.09 -5.37 16 22 C 0.05 1.13 11.97 85.25 1.02 2.15 16 23 N -0.34 -8.91 12.62 -56.79 -0.72 -9.62 16 24 N -0.38 -8.38 4.04 -334.11 -1.35 -9.73 16 25 C 0.10 2.06 6.59 41.28 0.27 2.33 16 26 C -0.06 -0.93 6.02 30.05 0.18 -0.75 16 27 C -0.12 -1.10 5.97 30.79 0.18 -0.92 16 28 C -0.13 -1.25 5.93 30.72 0.18 -1.07 16 29 C 0.12 1.71 7.28 86.44 0.63 2.34 16 30 C 0.12 3.32 5.27 86.86 0.46 3.78 16 31 H 0.06 1.89 7.23 -2.39 -0.02 1.88 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.37 18.97 7.80 -92.71 -0.72 18.25 16 35 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 1.92 7.99 -2.39 -0.02 1.90 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.47 7.89 -2.39 -0.02 1.45 16 42 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.11 1.18 7.93 -2.38 -0.02 1.16 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 47 H 0.06 0.79 8.12 -2.38 -0.02 0.78 16 48 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.91 7.94 -2.38 -0.02 1.89 16 52 H 0.07 1.81 8.04 -2.39 -0.02 1.80 16 Total: -1.00 -75.38 415.32 2.55 -72.82 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.18 Total: 30.44 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.49 Total: -0.37 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -6.09 Total: -129.86 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.38 2.55 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569814975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.668 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds