Wall clock time and date at job start Wed Apr 1 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47363 * 2 1 4 4 N 1.46502 * 109.47140 * 239.99369 * 2 1 3 5 5 C 1.36940 * 119.99568 * 85.00400 * 4 2 1 6 6 H 1.08003 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99993 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99965 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99775 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47447 * 89.99841 * 9 7 5 11 11 H 1.48508 * 109.46649 * 209.99754 * 9 7 5 12 12 H 1.48498 * 109.46933 * 329.99119 * 9 7 5 13 13 C 1.52999 * 109.46763 * 119.99959 * 2 1 3 14 14 H 1.09002 * 110.89089 * 59.91754 * 13 2 1 15 15 C 1.55156 * 111.00558 * 296.03558 * 13 2 1 16 16 C 1.54321 * 102.94322 * 206.42657 * 15 13 2 17 17 N 1.47020 * 107.27486 * 22.19445 * 16 15 13 18 18 C 1.34778 * 125.65353 * 181.02472 * 17 16 15 19 19 O 1.21278 * 120.00340 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99555 * 0.02562 * 18 17 16 21 21 C 1.50706 * 109.46849 * 180.02562 * 20 18 17 22 22 C 1.40055 * 126.09406 * 264.97428 * 21 20 18 23 23 N 1.31030 * 108.25012 * 180.02562 * 22 21 20 24 24 N 1.39651 * 108.12760 * 359.97269 * 23 22 21 25 25 C 1.34745 * 126.10243 * 84.99606 * 21 20 18 26 26 C 1.50870 * 127.76287 * 0.28455 * 25 21 20 27 27 C 1.53313 * 108.23887 * 164.29364 * 26 25 21 28 28 C 1.53153 * 109.31192 * 48.26528 * 27 26 25 29 29 C 1.46583 * 127.54724 * 180.09304 * 24 23 22 30 30 C 1.47431 * 108.69891 * 1.28337 * 17 16 15 31 31 H 1.09000 * 109.47253 * 305.08086 * 1 2 3 32 32 H 1.09001 * 109.47191 * 65.08132 * 1 2 3 33 33 H 1.09000 * 109.47763 * 185.07814 * 1 2 3 34 34 H 0.96991 * 120.00302 * 265.00140 * 4 2 1 35 35 H 0.97000 * 119.99893 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.72286 * 88.05815 * 15 13 2 37 37 H 1.09004 * 110.71984 * 324.79078 * 15 13 2 38 38 H 1.09003 * 109.88647 * 262.77133 * 16 15 13 39 39 H 1.09002 * 110.01292 * 141.67902 * 16 15 13 40 40 H 1.09000 * 109.47243 * 59.99981 * 20 18 17 41 41 H 1.09001 * 109.46885 * 299.99432 * 20 18 17 42 42 H 1.08001 * 125.88002 * 359.97438 * 22 21 20 43 43 H 1.09001 * 109.71940 * 283.60382 * 26 25 21 44 44 H 1.08998 * 109.72438 * 44.26264 * 26 25 21 45 45 H 1.09000 * 109.35345 * 288.37748 * 27 26 25 46 46 H 1.09003 * 109.61123 * 168.30947 * 27 26 25 47 47 H 1.09000 * 109.45509 * 170.66944 * 28 27 26 48 48 H 1.09004 * 109.45627 * 50.72583 * 28 27 26 49 49 H 1.09001 * 109.58837 * 282.45060 * 29 24 23 50 50 H 1.09003 * 109.58462 * 42.86947 * 29 24 23 51 51 H 1.09001 * 110.36349 * 94.48882 * 30 17 16 52 52 H 1.09000 * 110.36743 * 216.80926 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6123 -0.6619 -3.5090 8 7 2.7376 -0.0054 -4.6428 9 14 3.0565 -2.4744 -3.4250 10 1 1.8595 -3.2928 -3.7449 11 1 4.1324 -2.7663 -4.4062 12 1 3.5311 -2.8048 -2.0572 13 6 2.0399 -0.7213 1.2493 14 1 1.6881 -1.7527 1.2734 15 6 1.6258 0.0377 2.5376 16 6 2.7194 -0.3716 3.5465 17 7 3.8904 -0.8040 2.7697 18 6 5.0506 -1.2574 3.2841 19 8 5.9537 -1.5876 2.5450 20 6 5.2258 -1.3540 4.7778 21 6 6.6015 -1.8849 5.0889 22 6 6.9331 -3.2232 5.3352 23 7 8.2211 -3.2909 5.5663 24 7 8.7476 -2.0007 5.4737 25 6 7.7316 -1.1569 5.1801 26 6 7.8876 0.3332 5.0026 27 6 9.2471 0.7454 5.5791 28 6 10.3303 -0.1963 5.0450 29 6 10.1433 -1.5904 5.6535 30 6 3.5873 -0.6535 1.3347 31 1 -0.3634 0.5906 0.8410 32 1 -0.3633 0.4330 -0.9320 33 1 -0.3634 -1.0236 0.0910 34 1 2.2490 -1.6318 -1.1525 35 1 3.0616 -0.4626 -5.4346 36 1 0.6439 -0.2895 2.8793 37 1 1.6381 1.1149 2.3714 38 1 2.3624 -1.1934 4.1673 39 1 2.9848 0.4789 4.1745 40 1 4.4742 -2.0280 5.1889 41 1 5.1093 -0.3654 5.2219 42 1 6.2455 -4.0560 5.3355 43 1 7.8534 0.5828 3.9421 44 1 7.0867 0.8522 5.5292 45 1 9.2126 0.6813 6.6667 46 1 9.4754 1.7689 5.2818 47 1 11.3129 0.1895 5.3166 48 1 10.2530 -0.2602 3.9596 49 1 10.3812 -1.5601 6.7168 50 1 10.8004 -2.2996 5.1501 51 1 3.9480 0.3082 0.9697 52 1 4.0343 -1.4683 0.7651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569814982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:38 Heat of formation + Delta-G solvation = 45.582409 kcal Electronic energy + Delta-G solvation = -30806.106395 eV Core-core repulsion = 26806.954879 eV Total energy + Delta-G solvation = -3999.151516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.75503 -39.87796 -37.79889 -36.78117 -35.29728 -33.55134 -32.45963 -31.04234 -30.53529 -30.34902 -28.90783 -28.43141 -26.41984 -24.52993 -23.77788 -23.25787 -22.42869 -21.36675 -20.77657 -19.84094 -19.29115 -18.77209 -17.60221 -17.00388 -16.57410 -16.10902 -15.94746 -15.24723 -14.93568 -14.74287 -14.67514 -14.37621 -14.27635 -14.07544 -13.88204 -13.63625 -13.16225 -13.11614 -12.83202 -12.67775 -12.53881 -12.33276 -12.25874 -12.12956 -11.90113 -11.75629 -11.64615 -11.46750 -11.40401 -11.32014 -10.99848 -10.84218 -10.66652 -10.57138 -10.52332 -10.23852 -9.94846 -9.69742 -9.55564 -9.30021 -8.91533 -8.48859 -8.42568 -7.25268 -5.74542 -3.09965 1.76128 2.32840 2.59296 2.79243 3.23885 3.41855 3.46097 3.50145 4.03756 4.23015 4.32205 4.38577 4.53584 4.62774 4.65281 4.69751 4.82573 4.87538 4.92258 4.97263 5.06652 5.11508 5.17687 5.21575 5.26075 5.37362 5.39957 5.45745 5.48649 5.50056 5.52511 5.56788 5.71627 5.74670 5.77736 5.81784 5.86239 6.00408 6.04148 6.08699 6.23790 6.30209 6.35647 6.42466 6.51931 6.56430 6.78480 6.88244 7.00366 7.63006 7.67139 8.01070 8.34725 8.44548 9.23014 9.95938 10.15067 11.43833 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.002532 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.820233 B =11057.618455 C =11943.398944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.057 0.943 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C -0.106 4.106 14 H 0.079 0.921 15 C -0.123 4.123 16 C 0.101 3.899 17 N -0.623 5.623 18 C 0.523 3.477 19 O -0.531 6.531 20 C -0.052 4.052 21 C -0.219 4.219 22 C 0.061 3.939 23 N -0.298 5.298 24 N -0.370 5.370 25 C 0.105 3.895 26 C -0.062 4.062 27 C -0.125 4.125 28 C -0.138 4.138 29 C 0.135 3.865 30 C 0.118 3.882 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.180 0.820 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 1.589 28.265 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.075 0.925 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.202 1.202 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.162 4.162 16 C -0.022 4.022 17 N -0.358 5.358 18 C 0.311 3.689 19 O -0.406 6.406 20 C -0.093 4.093 21 C -0.231 4.231 22 C -0.125 4.125 23 N -0.118 5.118 24 N -0.154 5.154 25 C -0.022 4.022 26 C -0.101 4.101 27 C -0.162 4.162 28 C -0.177 4.177 29 C 0.014 3.986 30 C -0.004 4.004 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.197 0.803 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.109 0.891 51 H 0.090 0.910 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.284 0.798 28.020 29.529 hybrid contribution -0.445 -0.962 -0.393 1.130 sum 8.839 -0.163 27.628 29.008 Atomic orbital electron populations 1.22411 0.98598 1.00545 1.00893 1.20129 0.92059 0.95427 0.84401 0.92492 1.42796 1.79729 1.09512 1.07135 1.19033 1.36960 0.95555 0.85524 0.89210 1.24646 1.01370 0.97403 0.95587 1.69696 1.52691 1.35582 1.00272 0.86593 0.78073 0.86933 0.77228 1.21177 1.21790 1.20206 1.22754 0.94159 1.00359 0.95346 0.90228 1.22659 0.97715 1.01292 0.94500 1.22044 0.86239 0.99136 0.94794 1.48666 1.13917 1.64829 1.08426 1.20394 0.80789 0.77002 0.90739 1.90731 1.40091 1.48302 1.61514 1.19837 0.94348 1.02648 0.92464 1.18954 0.94504 0.93309 1.16306 1.23747 0.92892 0.96812 0.99068 1.77248 1.10427 0.98841 1.25304 1.48477 1.07207 1.04556 1.55120 1.20650 0.88150 0.93746 0.99698 1.20457 0.98340 0.88164 1.03108 1.21639 0.93862 0.99852 1.00887 1.21973 1.00412 0.93245 1.02048 1.21750 0.78330 0.96689 1.01852 1.22278 0.95129 1.02697 0.80261 0.94057 0.92152 0.93746 0.80678 0.93097 0.90024 0.90218 0.91647 0.91627 0.88417 0.88860 0.80292 0.89053 0.89152 0.91279 0.90121 0.89030 0.90340 0.90092 0.89121 0.90954 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.23 37.16 0.34 -2.29 16 2 C 0.19 3.36 2.40 -67.93 -0.16 3.19 16 3 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.75 -17.17 4.68 -53.43 -0.25 -17.42 16 5 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 6 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.51 13.97 55.49 0.78 -28.74 16 9 Si 0.88 22.63 27.74 -169.99 -4.71 17.92 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 12 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 13 C -0.11 -1.52 2.65 -88.35 -0.23 -1.75 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 15 C -0.12 -1.24 5.56 -24.90 -0.14 -1.38 16 16 C 0.10 0.94 6.48 -3.07 -0.02 0.92 16 17 N -0.62 -8.31 3.33 -170.38 -0.57 -8.87 16 18 C 0.52 7.52 7.84 -10.98 -0.09 7.43 16 19 O -0.53 -10.25 16.29 5.56 0.09 -10.16 16 20 C -0.05 -0.53 5.18 -29.03 -0.15 -0.68 16 21 C -0.22 -2.68 4.59 -105.18 -0.48 -3.16 16 22 C 0.06 0.78 11.97 -17.21 -0.21 0.57 16 23 N -0.30 -4.16 12.62 30.70 0.39 -3.78 16 24 N -0.37 -4.46 4.04 -56.95 -0.23 -4.69 16 25 C 0.10 1.23 6.59 -82.22 -0.54 0.68 16 26 C -0.06 -0.53 6.02 -27.64 -0.17 -0.70 16 27 C -0.12 -0.77 5.96 -26.49 -0.16 -0.92 16 28 C -0.14 -0.87 5.93 -26.52 -0.16 -1.03 16 29 C 0.13 1.09 7.28 -3.87 -0.03 1.06 16 30 C 0.12 1.92 6.15 -2.41 -0.01 1.90 16 31 H 0.04 0.53 7.60 -51.93 -0.39 0.13 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 35 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 42 H 0.18 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 45 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 52 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -37.04 412.74 -9.79 -46.83 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -9.05 Total: 5.60 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.46 Total: -2.91 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.12 Total: -63.49 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.04 -9.79 -46.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569814982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.414 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds