Wall clock time and date at job start Wed Apr 1 2020 04:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46776 * 2 1 4 4 C 1.50706 * 109.47475 * 240.00335 * 2 1 3 5 5 O 1.21283 * 119.99903 * 240.00164 * 4 2 1 6 6 N 1.34772 * 119.99852 * 59.99546 * 4 2 1 7 7 C 1.46498 * 119.99799 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47027 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.43612 * 300.10265 * 8 7 6 10 10 C 1.53143 * 109.43745 * 60.01891 * 8 7 6 11 11 C 1.53703 * 108.88264 * 66.12746 * 10 8 7 12 12 H 1.08999 * 112.10080 * 187.61509 * 11 10 8 13 13 C 1.54610 * 107.82984 * 312.23410 * 11 10 8 14 14 C 1.54828 * 104.65437 * 88.54919 * 13 11 10 15 15 C 1.54607 * 104.65035 * 359.97438 * 14 13 11 16 16 H 1.09007 * 112.68877 * 147.19099 * 15 14 13 17 17 C 1.53149 * 109.39778 * 180.21916 * 8 7 6 18 18 N 1.48292 * 104.26146 * 25.26082 * 15 14 13 19 19 C 1.36930 * 128.21540 * 138.40458 * 18 15 14 20 20 H 1.08005 * 119.99827 * 344.48198 * 19 18 15 21 21 C 1.38814 * 120.00499 * 164.48506 * 19 18 15 22 22 N 1.31618 * 119.99612 * 351.62355 * 21 19 18 23 23 Si 1.86801 * 120.00206 * 171.62241 * 21 19 18 24 24 H 1.48500 * 109.47223 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47246 * 300.00076 * 23 21 19 26 26 H 1.48506 * 109.46914 * 60.00155 * 23 21 19 27 27 C 1.50706 * 109.47367 * 119.99909 * 2 1 3 28 28 C 1.39860 * 126.03674 * 59.69454 * 27 2 1 29 29 N 1.30842 * 108.20109 * 179.81948 * 28 27 2 30 30 N 1.40086 * 108.20321 * 0.43630 * 29 28 27 31 31 C 1.46496 * 126.03591 * 179.74149 * 30 29 28 32 32 C 1.34946 * 107.92209 * 359.72173 * 30 29 28 33 33 H 1.09000 * 109.47116 * 299.99548 * 1 2 3 34 34 H 1.08995 * 109.47505 * 60.00156 * 1 2 3 35 35 H 1.09005 * 109.46776 * 180.02562 * 1 2 3 36 36 H 0.97004 * 120.00392 * 359.97438 * 6 4 2 37 37 H 1.08997 * 109.47564 * 59.99780 * 7 6 4 38 38 H 1.09005 * 109.46906 * 299.99594 * 7 6 4 39 39 H 1.09005 * 109.56898 * 306.31356 * 10 8 7 40 40 H 1.08998 * 109.66956 * 186.01026 * 10 8 7 41 41 H 1.09001 * 110.38078 * 207.47602 * 13 11 10 42 42 H 1.09001 * 110.38478 * 329.83848 * 13 11 10 43 43 H 1.09007 * 110.32628 * 241.26392 * 14 13 11 44 44 H 1.08991 * 110.52702 * 118.83730 * 14 13 11 45 45 H 1.09003 * 109.57392 * 53.66130 * 17 8 7 46 46 H 1.08997 * 109.57264 * 174.02881 * 17 8 7 47 47 H 0.97007 * 119.99956 * 179.97438 * 22 21 19 48 48 H 1.08000 * 125.90339 * 359.97438 * 28 27 2 49 49 H 1.08997 * 109.46985 * 269.97721 * 31 30 29 50 50 H 1.09007 * 109.47195 * 29.97378 * 31 30 29 51 51 H 1.09000 * 109.47048 * 149.97784 * 31 30 29 52 52 H 1.08001 * 126.12157 * 180.02562 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9407 -3.6507 8 6 1.6853 -0.2190 -4.9000 9 1 0.5953 -0.2170 -4.8985 10 6 2.1976 1.2242 -4.8993 11 6 3.7267 1.2093 -5.0544 12 1 4.1614 2.2008 -4.9277 13 6 4.2941 0.1768 -4.0532 14 6 4.2868 -1.1642 -4.8273 15 6 3.7151 -0.8091 -6.2192 16 1 4.1411 -1.4182 -7.0165 17 6 2.1918 -0.9457 -6.1493 18 7 4.0278 0.6308 -6.3861 19 6 4.4815 1.2749 -7.5060 20 1 4.8898 0.7057 -8.3281 21 6 4.4168 2.6593 -7.5849 22 7 3.7729 3.3416 -6.6616 23 14 5.2434 3.5539 -9.0011 24 1 5.0288 5.0161 -8.8557 25 1 6.6996 3.2630 -8.9878 26 1 4.6584 3.0937 -10.2862 27 6 2.0324 -0.7104 1.2305 28 6 1.7686 -2.0390 1.5789 29 7 2.3777 -2.2939 2.7085 30 7 3.0410 -1.1308 3.1202 31 6 3.8408 -0.9801 4.3383 32 6 2.8135 -0.1739 2.1963 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.1487 0.5386 -2.5436 37 1 1.8312 -1.9683 -3.6506 38 1 3.2848 -0.9410 -3.6509 39 1 1.9308 1.7059 -3.9585 40 1 1.7517 1.7722 -5.7293 41 1 5.3102 0.4461 -3.7651 42 1 3.6542 0.1097 -3.1734 43 1 3.6432 -1.8872 -4.3260 44 1 5.2992 -1.5568 -4.9211 45 1 1.9210 -2.0001 -6.0935 46 1 1.7456 -0.4989 -7.0377 47 1 3.7280 4.3090 -6.7165 48 1 1.1682 -2.7351 1.0121 49 1 3.2002 -0.6459 5.1545 50 1 4.2906 -1.9383 4.5985 51 1 4.6265 -0.2440 4.1683 52 1 3.1882 0.8387 2.2229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569861025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:38 Heat of formation + Delta-G solvation = 141.634261 kcal Electronic energy + Delta-G solvation = -32055.557649 eV Core-core repulsion = 28060.571254 eV Total energy + Delta-G solvation = -3994.986395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.70011 -42.11885 -40.05131 -36.10447 -35.30789 -34.50858 -33.44329 -32.79988 -31.89327 -31.63267 -30.28021 -28.20176 -27.28416 -25.71172 -24.78620 -24.64543 -22.36386 -22.00971 -21.78216 -21.02918 -20.73438 -20.09148 -18.73292 -18.17789 -17.45012 -17.29723 -16.64088 -16.40525 -16.21969 -15.98042 -15.35462 -15.23668 -14.81590 -14.58562 -14.50689 -14.40234 -14.13420 -13.82436 -13.67039 -13.53558 -13.35555 -13.21872 -13.09529 -13.08545 -12.93066 -12.86691 -12.59611 -12.48416 -12.38864 -12.35603 -12.30265 -11.97835 -11.42651 -11.34262 -11.15320 -11.00897 -10.89123 -10.77669 -10.53335 -10.37605 -10.25268 -9.34002 -9.25187 -8.67578 -7.78230 -5.12200 1.02283 1.48773 1.50167 1.55992 1.75990 1.84307 1.90037 2.53668 2.58726 3.37579 3.65368 3.66646 3.90903 4.00891 4.05198 4.06953 4.08497 4.27856 4.30894 4.33467 4.36113 4.45021 4.47168 4.48715 4.57232 4.60550 4.68308 4.72234 4.77974 4.85098 4.89506 4.91420 4.97992 5.05003 5.08760 5.12109 5.20840 5.22878 5.26035 5.35317 5.41265 5.43434 5.56763 5.58504 5.61741 5.73322 5.74172 5.87748 5.98050 6.22428 6.34895 6.79543 6.81497 7.16436 7.50512 7.82181 8.63733 9.31861 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.002550 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.960562 B =10977.103685 C =11302.378475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 H 0.123 0.877 4 C 0.511 3.489 5 O -0.578 6.578 6 N -0.714 5.714 7 C 0.015 3.985 8 C -0.076 4.076 9 H 0.069 0.931 10 C -0.098 4.098 11 C 0.177 3.823 12 H 0.068 0.932 13 C -0.163 4.163 14 C -0.149 4.149 15 C 0.139 3.861 16 H 0.064 0.936 17 C -0.117 4.117 18 N -0.607 5.607 19 C -0.233 4.233 20 H 0.070 0.930 21 C -0.056 4.056 22 N -0.931 5.931 23 Si 0.967 3.033 24 H -0.295 1.295 25 H -0.285 1.285 26 H -0.282 1.282 27 C -0.232 4.232 28 C 0.064 3.936 29 N -0.343 5.343 30 N -0.383 5.383 31 C 0.094 3.906 32 C 0.064 3.936 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.405 0.595 37 H 0.049 0.951 38 H 0.178 0.822 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.037 0.963 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.246 0.754 48 H 0.173 0.827 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.112 0.888 52 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -4.788 19.332 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.046 4.046 3 H 0.141 0.859 4 C 0.298 3.702 5 O -0.457 6.457 6 N -0.366 5.366 7 C -0.105 4.105 8 C -0.094 4.094 9 H 0.087 0.913 10 C -0.137 4.137 11 C 0.070 3.930 12 H 0.086 0.914 13 C -0.201 4.201 14 C -0.187 4.187 15 C 0.033 3.967 16 H 0.082 0.918 17 C -0.157 4.157 18 N -0.329 5.329 19 C -0.363 4.363 20 H 0.088 0.912 21 C -0.250 4.250 22 N -0.579 5.579 23 Si 0.796 3.204 24 H -0.221 1.221 25 H -0.212 1.212 26 H -0.208 1.208 27 C -0.244 4.244 28 C -0.121 4.121 29 N -0.165 5.165 30 N -0.165 5.165 31 C -0.046 4.046 32 C -0.083 4.083 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.242 0.758 37 H 0.067 0.933 38 H 0.194 0.806 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.190 0.810 49 H 0.107 0.893 50 H 0.103 0.897 51 H 0.130 0.870 52 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.356 -6.131 20.310 21.881 hybrid contribution -0.068 1.525 -1.916 2.450 sum -5.424 -4.607 18.394 19.723 Atomic orbital electron populations 1.21744 0.91110 1.02563 1.03710 1.19554 0.97954 0.99761 0.87378 0.85924 1.21090 0.79644 0.84318 0.85155 1.90674 1.39561 1.28203 1.87293 1.46219 1.53133 1.31918 1.05376 1.24765 1.08275 0.94407 0.83084 1.21139 0.99239 0.95284 0.93785 0.91263 1.21829 0.97776 0.94663 0.99429 1.21401 0.93001 0.95473 0.83098 0.91378 1.23596 1.00480 0.96030 0.99968 1.23413 1.01217 0.97357 0.96725 1.21658 0.93559 0.86245 0.95278 0.91823 1.21944 0.97217 0.99603 0.96916 1.45362 1.76030 1.03432 1.08035 1.19218 1.32091 0.89881 0.95075 0.91245 1.25473 1.01423 0.97304 1.00841 1.70021 1.45936 1.05600 1.36351 0.85338 0.78285 0.77212 0.79522 1.22082 1.21151 1.20805 1.19662 1.09537 0.95223 0.99957 1.23681 0.98581 0.96564 0.93271 1.77260 1.15034 1.07650 1.16537 1.48733 1.40073 1.07617 1.20092 1.22157 0.94936 1.04820 0.82655 1.22844 0.98639 0.96900 0.89955 0.90230 0.90683 0.93040 0.75835 0.93267 0.80630 0.92337 0.94847 0.94394 0.86928 0.87017 0.92628 0.90553 0.93984 0.94514 0.81032 0.89250 0.89713 0.86952 0.77477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.98 71.98 0.65 -1.26 16 2 C -0.02 -0.45 3.09 -12.28 -0.04 -0.48 16 3 H 0.12 1.71 8.11 -2.38 -0.02 1.69 16 4 C 0.51 13.17 6.86 87.66 0.60 13.77 16 5 O -0.58 -19.78 15.38 -3.04 -0.05 -19.83 16 6 N -0.71 -17.36 4.27 -463.06 -1.98 -19.34 16 7 C 0.01 0.42 2.68 86.38 0.23 0.65 16 8 C -0.08 -2.39 2.77 -10.70 -0.03 -2.42 16 9 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 10 C -0.10 -3.76 5.20 30.88 0.16 -3.60 16 11 C 0.18 7.89 3.16 45.43 0.14 8.04 16 12 H 0.07 3.61 6.28 -2.39 -0.01 3.60 16 13 C -0.16 -6.07 5.74 31.77 0.18 -5.89 16 14 C -0.15 -5.19 5.75 31.77 0.18 -5.01 16 15 C 0.14 5.49 4.29 45.23 0.19 5.69 16 16 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 17 C -0.12 -4.04 5.35 30.68 0.16 -3.88 16 18 N -0.61 -29.52 2.82 -638.33 -1.80 -31.32 16 19 C -0.23 -12.73 10.38 84.03 0.87 -11.86 16 20 H 0.07 3.72 7.84 -2.91 -0.02 3.69 16 21 C -0.06 -3.08 5.43 84.86 0.46 -2.62 16 22 N -0.93 -52.71 10.58 21.65 0.23 -52.48 16 23 Si 0.97 45.02 29.56 68.60 2.03 47.05 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C -0.23 -5.06 4.36 -20.15 -0.09 -5.15 16 28 C 0.06 1.67 10.78 85.23 0.92 2.59 16 29 N -0.34 -9.26 12.58 -57.03 -0.72 -9.98 16 30 N -0.38 -7.71 4.01 -369.57 -1.48 -9.19 16 31 C 0.09 0.98 11.47 127.77 1.47 2.45 16 32 C 0.06 1.15 11.38 83.54 0.95 2.10 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 35 H 0.05 0.83 8.02 -2.38 -0.02 0.81 16 36 H 0.41 8.21 6.74 -92.71 -0.62 7.58 16 37 H 0.05 1.42 7.99 -2.39 -0.02 1.40 16 38 H 0.18 5.63 1.12 -109.82 -0.12 5.50 16 39 H 0.06 1.95 6.72 -2.38 -0.02 1.93 16 40 H 0.03 1.56 8.03 -2.39 -0.02 1.54 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 3.78 3.94 -2.39 -0.01 3.77 16 43 H 0.11 3.46 4.82 -2.38 -0.01 3.45 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.25 13.68 8.31 -92.70 -0.77 12.91 16 48 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 49 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -73.45 391.20 3.44 -70.01 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.19 Total: 31.98 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 7.02 Total: -6.90 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.75 Total: -122.31 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.45 3.44 -70.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569861025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.640 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds