Wall clock time and date at job start Wed Apr 1 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47235 * 256.23732 * 3 2 1 5 5 C 1.52996 * 109.46985 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46838 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46832 * 179.97438 * 6 5 4 8 8 C 1.36739 * 127.13627 * 273.49735 * 7 6 5 9 9 C 1.50693 * 126.35044 * 359.97438 * 8 7 6 10 10 H 1.08998 * 110.45639 * 357.39945 * 9 8 7 11 11 C 1.54510 * 110.51043 * 120.00070 * 9 8 7 12 12 C 1.54483 * 104.06445 * 118.64696 * 11 9 8 13 13 O 1.44417 * 104.79963 * 23.97912 * 12 11 9 14 14 C 1.44420 * 105.27958 * 319.48605 * 13 12 11 15 15 N 1.30300 * 107.30141 * 180.02562 * 8 7 6 16 16 N 1.28528 * 110.05670 * 359.72994 * 15 8 7 17 17 C 1.31226 * 109.85760 * 0.44852 * 16 15 8 18 18 N 1.38571 * 126.47110 * 179.82195 * 17 16 15 19 19 C 1.46905 * 111.00133 * 302.43892 * 18 17 16 20 20 C 1.46899 * 111.00164 * 66.39765 * 18 17 16 21 21 H 1.09000 * 109.47109 * 54.99210 * 20 18 17 22 22 C 1.53007 * 109.46622 * 294.99495 * 20 18 17 23 23 C 1.50702 * 109.47121 * 174.99916 * 20 18 17 24 24 H 1.08001 * 120.00000 * 359.97438 * 23 20 18 25 25 C 1.37876 * 119.99503 * 179.97438 * 23 20 18 26 26 N 1.31514 * 120.00591 * 0.02562 * 25 23 20 27 27 Si 1.86801 * 119.99538 * 179.97438 * 25 23 20 28 28 H 1.48495 * 109.47291 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46813 * 120.00555 * 27 25 23 30 30 H 1.48501 * 109.47355 * 240.00226 * 27 25 23 31 31 H 4.44658 * 5.63390 * 179.97438 * 4 1 2 32 32 H 1.09001 * 109.46474 * 136.24055 * 3 2 1 33 33 H 1.08999 * 109.47352 * 16.23909 * 3 2 1 34 34 H 1.09001 * 109.46727 * 60.00057 * 4 3 2 35 35 H 1.08999 * 109.47095 * 300.00335 * 4 3 2 36 36 H 1.09007 * 109.47081 * 60.00532 * 5 4 3 37 37 H 1.08999 * 109.47359 * 300.00029 * 5 4 3 38 38 H 1.09007 * 109.46568 * 60.00563 * 6 5 4 39 39 H 1.08999 * 109.47451 * 300.00318 * 6 5 4 40 40 H 1.09000 * 110.51526 * 237.29156 * 11 9 8 41 41 H 1.09007 * 110.51437 * 359.86659 * 11 9 8 42 42 H 1.08999 * 110.37211 * 142.81127 * 12 11 9 43 43 H 1.09001 * 110.36994 * 265.14768 * 12 11 9 44 44 H 1.09000 * 110.37538 * 281.68258 * 14 13 12 45 45 H 1.08999 * 110.37475 * 159.34352 * 14 13 12 46 46 H 1.09004 * 109.46905 * 177.82598 * 19 18 17 47 47 H 1.09000 * 109.46704 * 297.82328 * 19 18 17 48 48 H 1.08997 * 109.46967 * 57.82904 * 19 18 17 49 49 H 1.08996 * 109.46745 * 179.97438 * 22 20 18 50 50 H 1.09001 * 109.46819 * 60.00202 * 22 20 18 51 51 H 1.08999 * 109.47404 * 300.00174 * 22 20 18 52 52 H 0.96994 * 120.00160 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.3441 1.4011 5 6 4.6859 0.3454 1.4009 6 6 5.1957 0.6894 2.8019 7 7 6.6608 0.6900 2.8018 8 6 7.4868 -0.3822 2.9965 9 6 7.0591 -1.8038 3.2552 10 1 5.9727 -1.8699 3.3146 11 6 7.5988 -2.7408 2.1516 12 6 8.5107 -3.7296 2.9115 13 8 8.0157 -3.7198 4.2681 14 6 7.7086 -2.3373 4.5513 15 7 8.7123 0.0535 2.9180 16 7 8.7167 1.3171 2.6832 17 6 7.4840 1.7609 2.6080 18 7 7.0924 3.0687 2.3708 19 6 7.6548 3.9777 3.3785 20 6 7.4643 3.4918 1.0141 21 1 7.0506 2.7912 0.2888 22 6 8.9890 3.5161 0.8875 23 6 6.9164 4.8706 0.7500 24 1 6.3483 5.3813 1.5134 25 6 7.1404 5.4800 -0.4664 26 7 7.8317 4.8579 -1.3962 27 14 6.4606 7.1888 -0.7941 28 1 5.7242 7.6667 0.4036 29 1 7.5801 8.1185 -1.0900 30 1 5.5375 7.1399 -1.9563 31 1 -1.0500 0.0002 -0.0001 32 1 3.0089 0.7431 -0.7108 33 1 3.0099 -0.9858 -0.2874 34 1 2.7929 -0.3983 2.1119 35 1 2.7921 1.3305 1.6885 36 1 5.0485 1.0881 0.6902 37 1 5.0501 -0.6409 1.1134 38 1 4.8331 -0.0530 3.5129 39 1 4.8316 1.6758 3.0890 40 1 6.7796 -3.2721 1.6671 41 1 8.1731 -2.1754 1.4176 42 1 8.4264 -4.7287 2.4840 43 1 9.5460 -3.3897 2.8828 44 1 8.6209 -1.7839 4.7741 45 1 7.0083 -2.2668 5.3835 46 1 7.3635 5.0022 3.1466 47 1 7.2761 3.7066 4.3640 48 1 8.7419 3.8989 3.3726 49 1 9.2649 3.8296 -0.1192 50 1 9.3853 2.5188 1.0786 51 1 9.4027 4.2166 1.6129 52 1 7.9896 5.2868 -2.2517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587766510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:01 Heat of formation + Delta-G solvation = 90.836257 kcal Electronic energy + Delta-G solvation = -31640.489805 eV Core-core repulsion = 27643.300642 eV Total energy + Delta-G solvation = -3997.189162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64864 -39.36750 -37.23180 -36.81754 -34.73518 -33.26935 -32.68129 -32.17040 -29.84927 -29.07630 -28.69706 -28.00441 -25.43232 -25.21771 -24.61296 -23.46128 -22.35863 -21.65928 -21.39940 -19.85637 -19.41202 -18.19010 -17.09364 -16.49981 -16.36713 -15.92693 -15.79545 -15.78461 -15.39001 -15.01652 -14.67815 -14.35520 -14.29245 -13.68764 -13.62484 -13.37424 -13.15559 -12.94054 -12.45574 -12.39262 -12.13123 -11.98125 -11.75685 -11.67335 -11.50238 -11.48382 -11.30494 -11.15702 -11.04189 -10.96345 -10.84847 -10.77542 -10.54745 -10.37881 -10.21908 -10.19868 -10.15877 -9.94816 -9.90268 -9.68891 -8.91521 -8.50398 -8.46079 -7.76759 -6.11141 -4.17438 2.07176 2.56136 2.72328 2.73211 3.23208 3.23842 3.32257 3.35364 3.76377 4.18293 4.29839 4.36467 4.42965 4.58546 4.60475 4.64988 4.75753 4.86928 4.95206 5.03774 5.08577 5.13817 5.21211 5.34258 5.38555 5.46083 5.53075 5.56710 5.59687 5.68069 5.72340 5.79113 5.80272 5.83687 5.90937 5.96422 6.02268 6.16119 6.22274 6.33149 6.43317 6.57155 6.60168 6.81040 6.97972 7.04760 7.15687 7.49060 7.50024 7.61602 7.71980 7.88335 8.22532 8.42717 8.86043 9.19034 9.47691 10.95474 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007355 B = 0.003998 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.783477 B = 7002.507216 C = 9865.428344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.016 4.016 4 C -0.107 4.107 5 C -0.136 4.136 6 C 0.115 3.885 7 N -0.467 5.467 8 C 0.159 3.841 9 C -0.027 4.027 10 H 0.096 0.904 11 C -0.142 4.142 12 C 0.048 3.952 13 O -0.375 6.375 14 C 0.059 3.941 15 N -0.287 5.287 16 N -0.311 5.311 17 C 0.380 3.620 18 N -0.471 5.471 19 C 0.045 3.955 20 C 0.227 3.773 21 H 0.035 0.965 22 C -0.175 4.175 23 C -0.507 4.507 24 H 0.066 0.934 25 C 0.063 3.937 26 N -0.888 5.888 27 Si 0.898 3.102 28 H -0.272 1.272 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.215 0.785 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.043 0.957 48 H 0.040 0.960 49 H 0.085 0.915 50 H 0.037 0.963 51 H 0.031 0.969 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 -13.990 7.309 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.052 4.052 4 C -0.145 4.145 5 C -0.174 4.174 6 C -0.008 4.008 7 N -0.159 5.159 8 C -0.108 4.108 9 C -0.048 4.048 10 H 0.114 0.886 11 C -0.181 4.181 12 C -0.029 4.029 13 O -0.293 6.293 14 C -0.019 4.019 15 N -0.128 5.128 16 N -0.155 5.155 17 C 0.024 3.976 18 N -0.197 5.197 19 C -0.102 4.102 20 C 0.123 3.877 21 H 0.053 0.947 22 C -0.234 4.234 23 C -0.546 4.546 24 H 0.084 0.916 25 C -0.139 4.139 26 N -0.526 5.526 27 Si 0.726 3.274 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.232 0.768 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.104 0.896 50 H 0.056 0.944 51 H 0.050 0.950 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.543 -14.088 7.300 17.569 hybrid contribution -1.234 1.263 -0.686 1.895 sum -8.778 -12.824 6.614 16.889 Atomic orbital electron populations 1.24875 0.95955 1.01729 1.01121 1.23198 0.94600 0.99926 1.00178 1.18763 0.84560 1.03293 0.98592 1.21404 0.94188 1.02851 0.96035 1.21960 0.95460 1.03092 0.96876 1.21809 0.75744 1.04842 0.98445 1.46379 1.08231 1.07761 1.53568 1.24115 0.87782 0.91009 1.07874 1.20795 1.01034 0.86007 0.96956 0.88597 1.22982 1.00260 0.96857 0.97994 1.23421 0.97753 0.99822 0.81867 1.89102 1.84808 1.25184 1.30244 1.23450 1.00250 0.82587 0.95622 1.73906 1.17053 1.04714 1.17113 1.74800 1.17497 1.02904 1.20258 1.22934 0.84880 0.90051 0.99725 1.59427 1.58290 0.94204 1.07775 1.22246 0.98322 0.97516 0.92148 1.19374 0.92306 0.96245 0.79818 0.94681 1.22472 0.98448 0.98984 1.03504 1.21036 1.33885 0.99817 0.99855 0.91598 1.24895 0.95072 0.97991 0.95941 1.69914 1.39450 1.37732 1.05517 0.86436 0.78714 0.83967 0.78271 1.19656 1.20996 1.21026 0.76787 0.88920 0.89609 0.91552 0.90728 0.89692 0.91481 0.89719 0.87598 0.90177 0.89461 0.89014 0.91505 0.90653 0.88877 0.89154 0.93857 0.94113 0.89615 0.94448 0.95024 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.20 19.25 29.55 0.57 -1.63 16 2 C -0.18 -2.00 13.34 -37.12 -0.50 -2.49 16 3 C -0.02 -0.16 5.70 -29.52 -0.17 -0.32 16 4 C -0.11 -1.02 5.17 -26.73 -0.14 -1.16 16 5 C -0.14 -1.54 5.54 -26.73 -0.15 -1.69 16 6 C 0.11 1.38 5.85 -4.04 -0.02 1.35 16 7 N -0.47 -7.40 2.81 -114.08 -0.32 -7.72 16 8 C 0.16 2.44 6.42 -154.01 -0.99 1.45 16 9 C -0.03 -0.30 3.53 -90.20 -0.32 -0.62 16 10 H 0.10 0.87 7.09 -51.93 -0.37 0.50 16 11 C -0.14 -1.47 6.73 -25.16 -0.17 -1.64 16 12 C 0.05 0.48 7.63 37.94 0.29 0.77 16 13 O -0.37 -4.42 11.65 -35.23 -0.41 -4.83 16 14 C 0.06 0.65 7.17 37.93 0.27 0.92 16 15 N -0.29 -5.43 11.90 32.99 0.39 -5.04 16 16 N -0.31 -6.62 9.66 30.31 0.29 -6.33 16 17 C 0.38 7.50 6.25 -318.88 -1.99 5.51 16 18 N -0.47 -9.80 4.77 -176.07 -0.84 -10.64 16 19 C 0.05 0.87 8.70 60.07 0.52 1.40 16 20 C 0.23 5.54 2.32 -68.86 -0.16 5.38 16 21 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 22 C -0.17 -4.37 8.19 37.16 0.30 -4.06 16 23 C -0.51 -13.06 7.85 -34.44 -0.27 -13.33 16 24 H 0.07 1.67 6.78 -52.49 -0.36 1.31 16 25 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 26 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 27 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.22 1.40 7.80 -54.09 -0.42 0.98 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.76 7.38 -51.92 -0.38 0.37 16 39 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.07 7.73 -51.93 -0.40 0.67 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.96 7.64 -51.93 -0.40 0.56 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.77 6.36 -51.93 -0.33 1.44 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.83 6.50 -51.93 -0.34 0.49 16 49 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 50 H 0.04 0.93 5.79 -51.93 -0.30 0.62 16 51 H 0.03 0.76 6.52 -51.93 -0.34 0.43 16 52 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 417.71 15.07 6.29 6.29 Total: -1.00 -31.11 417.71 -10.57 -41.68 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.58 Total: 3.65 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.01 Total: -8.59 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.15 Total: -53.64 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.41 Total: -4.83 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.11 -10.57 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587766510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.518 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds