Wall clock time and date at job start Wed Apr 1 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47235 * 256.23732 * 3 2 1 5 5 C 1.52996 * 109.46985 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46838 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46832 * 179.97438 * 6 5 4 8 8 C 1.36739 * 127.13627 * 273.49735 * 7 6 5 9 9 C 1.50693 * 126.35044 * 359.97438 * 8 7 6 10 10 H 1.08998 * 110.45639 * 357.39945 * 9 8 7 11 11 C 1.54510 * 110.51043 * 120.00070 * 9 8 7 12 12 C 1.54483 * 104.06445 * 118.64696 * 11 9 8 13 13 O 1.44417 * 104.79963 * 23.97912 * 12 11 9 14 14 C 1.44420 * 105.27958 * 319.48605 * 13 12 11 15 15 N 1.30300 * 107.30141 * 180.02562 * 8 7 6 16 16 N 1.28528 * 110.05670 * 359.72994 * 15 8 7 17 17 C 1.31226 * 109.85760 * 0.44852 * 16 15 8 18 18 N 1.38571 * 126.47110 * 179.82195 * 17 16 15 19 19 C 1.46905 * 111.00133 * 302.43892 * 18 17 16 20 20 C 1.46899 * 111.00164 * 66.39765 * 18 17 16 21 21 H 1.09000 * 109.47109 * 54.99210 * 20 18 17 22 22 C 1.53007 * 109.46622 * 294.99495 * 20 18 17 23 23 C 1.50702 * 109.47121 * 174.99916 * 20 18 17 24 24 H 1.08001 * 120.00000 * 359.97438 * 23 20 18 25 25 C 1.37876 * 119.99503 * 179.97438 * 23 20 18 26 26 N 1.31514 * 120.00591 * 0.02562 * 25 23 20 27 27 Si 1.86801 * 119.99538 * 179.97438 * 25 23 20 28 28 H 1.48495 * 109.47291 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46813 * 120.00555 * 27 25 23 30 30 H 1.48501 * 109.47355 * 240.00226 * 27 25 23 31 31 H 4.44658 * 5.63390 * 179.97438 * 4 1 2 32 32 H 1.09001 * 109.46474 * 136.24055 * 3 2 1 33 33 H 1.08999 * 109.47352 * 16.23909 * 3 2 1 34 34 H 1.09001 * 109.46727 * 60.00057 * 4 3 2 35 35 H 1.08999 * 109.47095 * 300.00335 * 4 3 2 36 36 H 1.09007 * 109.47081 * 60.00532 * 5 4 3 37 37 H 1.08999 * 109.47359 * 300.00029 * 5 4 3 38 38 H 1.09007 * 109.46568 * 60.00563 * 6 5 4 39 39 H 1.08999 * 109.47451 * 300.00318 * 6 5 4 40 40 H 1.09000 * 110.51526 * 237.29156 * 11 9 8 41 41 H 1.09007 * 110.51437 * 359.86659 * 11 9 8 42 42 H 1.08999 * 110.37211 * 142.81127 * 12 11 9 43 43 H 1.09001 * 110.36994 * 265.14768 * 12 11 9 44 44 H 1.09000 * 110.37538 * 281.68258 * 14 13 12 45 45 H 1.08999 * 110.37475 * 159.34352 * 14 13 12 46 46 H 1.09004 * 109.46905 * 177.82598 * 19 18 17 47 47 H 1.09000 * 109.46704 * 297.82328 * 19 18 17 48 48 H 1.08997 * 109.46967 * 57.82904 * 19 18 17 49 49 H 1.08996 * 109.46745 * 179.97438 * 22 20 18 50 50 H 1.09001 * 109.46819 * 60.00202 * 22 20 18 51 51 H 1.08999 * 109.47404 * 300.00174 * 22 20 18 52 52 H 0.96994 * 120.00160 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.3441 1.4011 5 6 4.6859 0.3454 1.4009 6 6 5.1957 0.6894 2.8019 7 7 6.6608 0.6900 2.8018 8 6 7.4868 -0.3822 2.9965 9 6 7.0591 -1.8038 3.2552 10 1 5.9727 -1.8699 3.3146 11 6 7.5988 -2.7408 2.1516 12 6 8.5107 -3.7296 2.9115 13 8 8.0157 -3.7198 4.2681 14 6 7.7086 -2.3373 4.5513 15 7 8.7123 0.0535 2.9180 16 7 8.7167 1.3171 2.6832 17 6 7.4840 1.7609 2.6080 18 7 7.0924 3.0687 2.3708 19 6 7.6548 3.9777 3.3785 20 6 7.4643 3.4918 1.0141 21 1 7.0506 2.7912 0.2888 22 6 8.9890 3.5161 0.8875 23 6 6.9164 4.8706 0.7500 24 1 6.3483 5.3813 1.5134 25 6 7.1404 5.4800 -0.4664 26 7 7.8317 4.8579 -1.3962 27 14 6.4606 7.1888 -0.7941 28 1 5.7242 7.6667 0.4036 29 1 7.5801 8.1185 -1.0900 30 1 5.5375 7.1399 -1.9563 31 1 -1.0500 0.0002 -0.0001 32 1 3.0089 0.7431 -0.7108 33 1 3.0099 -0.9858 -0.2874 34 1 2.7929 -0.3983 2.1119 35 1 2.7921 1.3305 1.6885 36 1 5.0485 1.0881 0.6902 37 1 5.0501 -0.6409 1.1134 38 1 4.8331 -0.0530 3.5129 39 1 4.8316 1.6758 3.0890 40 1 6.7796 -3.2721 1.6671 41 1 8.1731 -2.1754 1.4176 42 1 8.4264 -4.7287 2.4840 43 1 9.5460 -3.3897 2.8828 44 1 8.6209 -1.7839 4.7741 45 1 7.0083 -2.2668 5.3835 46 1 7.3635 5.0022 3.1466 47 1 7.2761 3.7066 4.3640 48 1 8.7419 3.8989 3.3726 49 1 9.2649 3.8296 -0.1192 50 1 9.3853 2.5188 1.0786 51 1 9.4027 4.2166 1.6129 52 1 7.9896 5.2868 -2.2517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587766510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:00 Heat of formation + Delta-G solvation = 74.960706 kcal Electronic energy + Delta-G solvation = -31641.178220 eV Core-core repulsion = 27643.300642 eV Total energy + Delta-G solvation = -3997.877578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.02588 -40.27558 -38.94081 -37.77247 -35.76643 -34.93284 -33.94691 -33.15721 -31.10355 -30.54161 -29.78449 -29.31667 -27.26340 -26.99839 -25.66559 -24.45235 -23.32009 -23.19522 -22.43961 -21.07768 -20.88056 -18.94402 -18.43973 -18.07602 -17.61316 -17.21037 -16.99440 -16.84092 -16.56543 -16.40805 -16.02527 -15.48165 -15.31146 -15.14172 -14.79217 -14.55695 -14.31261 -14.13555 -13.90774 -13.53959 -13.31388 -13.13213 -13.09004 -12.92282 -12.84944 -12.75028 -12.71266 -12.51715 -12.49229 -12.32616 -12.23561 -12.07661 -12.01071 -11.90835 -11.70731 -11.41918 -11.27085 -10.98164 -10.96211 -10.84141 -10.76570 -10.53500 -9.92517 -9.47964 -8.14523 -6.27630 0.73108 1.32458 1.42918 1.45493 1.56590 1.80205 1.91078 1.94585 2.41226 2.84926 3.05532 3.16399 3.35512 3.47812 3.56467 3.66709 3.75187 3.85851 4.00028 4.09464 4.15325 4.20277 4.26425 4.31549 4.41662 4.45381 4.54785 4.58261 4.65739 4.69295 4.72951 4.73937 4.76171 4.86639 4.89898 4.96769 5.01179 5.02996 5.03026 5.07895 5.11043 5.15241 5.21609 5.28546 5.31625 5.42430 5.62773 5.64518 5.75198 5.85462 6.01745 6.20902 6.64583 6.73532 6.82337 7.41522 7.77103 8.92370 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007355 B = 0.003998 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.783477 B = 7002.507216 C = 9865.428344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.217 4.217 3 C -0.016 4.016 4 C -0.095 4.095 5 C -0.125 4.125 6 C 0.107 3.893 7 N -0.461 5.461 8 C 0.186 3.814 9 C -0.026 4.026 10 H 0.132 0.868 11 C -0.139 4.139 12 C 0.046 3.954 13 O -0.383 6.383 14 C 0.061 3.939 15 N -0.324 5.324 16 N -0.347 5.347 17 C 0.356 3.644 18 N -0.465 5.465 19 C 0.050 3.950 20 C 0.240 3.760 21 H -0.001 1.001 22 C -0.157 4.157 23 C -0.515 4.515 24 H 0.071 0.929 25 C 0.015 3.985 26 N -0.920 5.920 27 Si 0.963 3.037 28 H -0.260 1.260 29 H -0.284 1.284 30 H -0.282 1.282 31 H 0.244 0.756 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.025 0.975 49 H 0.059 0.941 50 H 0.032 0.968 51 H 0.030 0.970 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.376 -15.469 8.740 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.217 4.217 3 C -0.053 4.053 4 C -0.133 4.133 5 C -0.163 4.163 6 C -0.014 4.014 7 N -0.153 5.153 8 C -0.082 4.082 9 C -0.047 4.047 10 H 0.150 0.850 11 C -0.178 4.178 12 C -0.030 4.030 13 O -0.301 6.301 14 C -0.017 4.017 15 N -0.164 5.164 16 N -0.190 5.190 17 C -0.001 4.001 18 N -0.190 5.190 19 C -0.097 4.097 20 C 0.135 3.865 21 H 0.017 0.983 22 C -0.216 4.216 23 C -0.553 4.553 24 H 0.089 0.911 25 C -0.184 4.184 26 N -0.559 5.559 27 Si 0.789 3.211 28 H -0.184 1.184 29 H -0.210 1.210 30 H -0.208 1.208 31 H 0.260 0.740 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.077 0.923 50 H 0.051 0.949 51 H 0.049 0.951 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.355 -15.577 8.754 20.652 hybrid contribution -0.376 1.591 -1.118 1.980 sum -10.732 -13.986 7.636 19.212 Atomic orbital electron populations 1.25698 0.96888 1.00414 0.99723 1.23582 0.95351 1.01212 1.01525 1.18752 0.84526 1.03539 0.98493 1.21308 0.92401 1.03159 0.96406 1.21842 0.96783 1.02272 0.95450 1.22187 0.73337 1.06076 0.99797 1.46564 1.09597 1.06595 1.52495 1.24919 0.86700 0.92299 1.04280 1.21127 1.03120 0.83077 0.97423 0.85008 1.22989 1.00945 0.96559 0.97284 1.23519 0.96954 1.01144 0.81378 1.89104 1.84807 1.25240 1.30976 1.23445 0.99831 0.82158 0.96248 1.73831 1.19271 1.03924 1.19352 1.74656 1.18883 1.04327 1.21115 1.22813 0.85511 0.90246 1.01565 1.59278 1.58185 0.95270 1.06293 1.22233 0.97393 0.97081 0.93023 1.18983 0.91227 0.95036 0.81299 0.98348 1.22266 0.99236 0.98475 1.01640 1.21287 1.33693 1.00296 1.00040 0.91132 1.25702 0.95283 1.01643 0.95745 1.70055 1.40638 1.39349 1.05907 0.85419 0.77981 0.79379 0.78343 1.18431 1.20975 1.20841 0.73951 0.90762 0.88204 0.88854 0.91729 0.94087 0.90162 0.85178 0.88354 0.87216 0.91950 0.86453 0.92897 0.93034 0.86293 0.89587 0.91154 0.95624 0.92258 0.94885 0.95066 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.75 19.25 74.32 1.43 -2.32 16 2 C -0.22 -4.52 13.34 31.12 0.42 -4.10 16 3 C -0.02 -0.32 5.70 28.79 0.16 -0.15 16 4 C -0.09 -1.63 5.17 30.59 0.16 -1.48 16 5 C -0.13 -2.70 5.54 30.59 0.17 -2.53 16 6 C 0.11 2.35 5.85 86.38 0.51 2.85 16 7 N -0.46 -14.24 2.81 -514.84 -1.45 -15.69 16 8 C 0.19 5.52 6.42 137.64 0.88 6.40 16 9 C -0.03 -0.51 3.53 -10.52 -0.04 -0.55 16 10 H 0.13 1.68 7.09 -2.39 -0.02 1.67 16 11 C -0.14 -2.55 6.73 31.61 0.21 -2.34 16 12 C 0.05 0.84 7.63 72.49 0.55 1.40 16 13 O -0.38 -8.02 11.65 -148.98 -1.74 -9.76 16 14 C 0.06 1.20 7.17 72.49 0.52 1.72 16 15 N -0.32 -12.48 11.90 -49.54 -0.59 -13.06 16 16 N -0.35 -15.23 9.66 -58.01 -0.56 -15.79 16 17 C 0.36 14.35 6.25 260.11 1.63 15.97 16 18 N -0.46 -19.83 4.77 -710.97 -3.39 -23.23 16 19 C 0.05 1.95 8.70 127.69 1.11 3.06 16 20 C 0.24 12.25 2.32 44.17 0.10 12.35 16 21 H 0.00 -0.08 8.11 -2.39 -0.02 -0.10 16 22 C -0.16 -8.24 8.19 71.98 0.59 -7.65 16 23 C -0.51 -27.09 7.85 25.60 0.20 -26.89 16 24 H 0.07 3.59 6.78 -2.91 -0.02 3.57 16 25 C 0.02 0.83 5.30 84.65 0.45 1.28 16 26 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 27 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 31 H 0.24 2.42 7.80 -4.42 -0.03 2.38 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.13 1.70 7.38 -2.38 -0.02 1.68 16 39 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.49 7.73 -2.38 -0.02 1.47 16 42 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 1.27 7.64 -2.39 -0.02 1.26 16 45 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 3.39 6.36 -2.38 -0.02 3.37 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.03 1.06 6.50 -2.39 -0.02 1.04 16 49 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 50 H 0.03 1.73 5.79 -2.39 -0.01 1.71 16 51 H 0.03 1.58 6.52 -2.39 -0.02 1.56 16 52 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -71.33 417.71 4.50 -66.83 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.90 Total: 21.69 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 9.06 Total: -2.98 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -5.75 Total: -120.08 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.74 Total: -9.76 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -71.33 4.50 -66.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587766510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.791 kcal (2) G-P(sol) polarization free energy of solvation -71.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds