Wall clock time and date at job start Wed Apr 1 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47539 * 298.92538 * 3 2 1 5 5 C 1.52994 * 109.47480 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47480 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47197 * 180.02562 * 6 5 4 8 8 C 1.36744 * 127.13357 * 274.28316 * 7 6 5 9 9 C 1.50694 * 126.34703 * 359.96674 * 8 7 6 10 10 H 1.09003 * 110.45926 * 357.68157 * 9 8 7 11 11 C 1.54505 * 110.51177 * 120.28603 * 9 8 7 12 12 C 1.54480 * 104.06399 * 118.64406 * 11 9 8 13 13 O 1.44427 * 104.80199 * 23.97923 * 12 11 9 14 14 C 1.44420 * 105.27386 * 319.48966 * 13 12 11 15 15 N 1.30295 * 107.30365 * 180.23166 * 8 7 6 16 16 N 1.28525 * 110.05211 * 359.77029 * 15 8 7 17 17 C 1.31212 * 109.86504 * 0.02562 * 16 15 8 18 18 N 1.38588 * 126.47786 * 179.97438 * 17 16 15 19 19 C 1.46898 * 111.00019 * 294.03983 * 18 17 16 20 20 C 1.46900 * 110.99796 * 57.98940 * 18 17 16 21 21 H 1.09007 * 109.47402 * 300.00267 * 20 18 17 22 22 C 1.53005 * 109.47278 * 59.99990 * 20 18 17 23 23 C 1.50694 * 109.47504 * 179.97438 * 20 18 17 24 24 H 1.08002 * 119.99589 * 0.02562 * 23 20 18 25 25 C 1.37869 * 120.00411 * 180.02562 * 23 20 18 26 26 N 1.31515 * 119.99976 * 359.97438 * 25 23 20 27 27 Si 1.86804 * 120.00038 * 180.02562 * 25 23 20 28 28 H 1.48503 * 109.47165 * 60.00167 * 27 25 23 29 29 H 1.48506 * 109.47203 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47154 * 299.99975 * 27 25 23 31 31 H 4.44655 * 5.63413 * 179.97438 * 4 1 2 32 32 H 1.09001 * 109.46657 * 178.91852 * 3 2 1 33 33 H 1.09004 * 109.47082 * 58.92391 * 3 2 1 34 34 H 1.08992 * 109.47255 * 59.99542 * 4 3 2 35 35 H 1.09004 * 109.46814 * 300.00018 * 4 3 2 36 36 H 1.08999 * 109.47152 * 59.99685 * 5 4 3 37 37 H 1.09004 * 109.46933 * 299.99726 * 5 4 3 38 38 H 1.08992 * 109.47255 * 59.99323 * 6 5 4 39 39 H 1.09004 * 109.46814 * 299.99798 * 6 5 4 40 40 H 1.09000 * 110.51285 * 237.28956 * 11 9 8 41 41 H 1.09003 * 110.51071 * 359.86428 * 11 9 8 42 42 H 1.08997 * 110.37318 * 142.81332 * 12 11 9 43 43 H 1.09000 * 110.37342 * 265.14535 * 12 11 9 44 44 H 1.09005 * 110.37119 * 281.67565 * 14 13 12 45 45 H 1.08999 * 110.37270 * 159.34691 * 14 13 12 46 46 H 1.08993 * 109.47175 * 189.89415 * 19 18 17 47 47 H 1.08994 * 109.47267 * 69.89232 * 19 18 17 48 48 H 1.09001 * 109.46550 * 309.89089 * 19 18 17 49 49 H 1.09002 * 109.47262 * 180.02562 * 22 20 18 50 50 H 1.09000 * 109.46936 * 300.00292 * 22 20 18 51 51 H 1.08999 * 109.46874 * 60.00076 * 22 20 18 52 52 H 0.97003 * 119.99666 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.6968 1.2625 5 6 4.6863 -0.6955 1.2628 6 6 5.1967 -1.3924 2.5255 7 7 6.6617 -1.3906 2.5261 8 6 7.4886 -2.3018 1.9294 9 6 7.0618 -3.5116 1.1388 10 1 5.9753 -3.5987 1.1323 11 6 7.6074 -3.4350 -0.3047 12 6 8.5176 -4.6771 -0.4284 13 8 8.0171 -5.6014 0.5621 14 6 7.7068 -4.7909 1.7164 15 7 8.7137 -1.9332 2.1761 16 7 8.7171 -0.8568 2.8784 17 6 7.4843 -0.4781 3.1200 18 7 7.0916 0.6355 3.8454 19 6 7.4733 0.5051 5.2580 20 6 7.6442 1.8653 3.2623 21 1 8.7330 1.8119 3.2658 22 6 7.1458 2.0163 1.8236 23 6 7.1964 3.0523 4.0755 24 1 6.5648 2.9075 4.9396 25 6 7.5929 4.3231 3.7167 26 7 8.3625 4.4993 2.6649 27 14 7.0383 5.7943 4.7253 28 1 7.5227 5.6483 6.1215 29 1 7.5969 7.0376 4.1357 30 1 5.5551 5.8667 4.7209 31 1 -1.0499 0.0000 0.0003 32 1 3.0088 1.0283 -0.0194 33 1 3.0096 -0.5297 -0.8802 34 1 2.7935 -1.7243 1.2818 35 1 2.7928 -0.1665 2.1427 36 1 5.0488 0.3323 1.2437 37 1 5.0503 -1.2256 0.3826 38 1 4.8342 -2.4200 2.5452 39 1 4.8328 -0.8619 3.4055 40 1 6.7908 -3.4867 -1.0249 41 1 8.1838 -2.5209 -0.4472 42 1 8.4365 -5.1091 -1.4258 43 1 9.5525 -4.4123 -0.2117 44 1 8.6174 -4.5436 2.2622 45 1 7.0030 -5.3104 2.3668 46 1 7.0046 1.3014 5.8360 47 1 8.5569 0.5789 5.3498 48 1 7.1416 -0.4620 5.6361 49 1 7.5562 2.9286 1.3907 50 1 7.4694 1.1578 1.2350 51 1 6.0572 2.0698 1.8200 52 1 8.6418 5.3934 2.4126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587766511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:07 Heat of formation + Delta-G solvation = 86.377137 kcal Electronic energy + Delta-G solvation = -31712.988247 eV Core-core repulsion = 27715.605723 eV Total energy + Delta-G solvation = -3997.382524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.64823 -39.36317 -37.06083 -36.82101 -34.74210 -33.28474 -32.73149 -32.17697 -29.84609 -29.41541 -28.84987 -28.16119 -25.63640 -24.73008 -24.33346 -23.50212 -22.41255 -21.80489 -21.37501 -19.99860 -19.33023 -18.22618 -17.09497 -16.55241 -16.39946 -16.04224 -15.82138 -15.72086 -15.34948 -14.97289 -14.67593 -14.37509 -14.26954 -13.76035 -13.65266 -13.33519 -13.23591 -13.00375 -12.44582 -12.39259 -12.22940 -12.02005 -11.84071 -11.74585 -11.66447 -11.48420 -11.21031 -11.11969 -11.04331 -10.96199 -10.85073 -10.81821 -10.40804 -10.33651 -10.30971 -10.22957 -10.12144 -10.07252 -9.93366 -9.70986 -9.14447 -8.55720 -8.46594 -7.76671 -6.11095 -4.17971 2.07588 2.55530 2.70158 2.70489 3.24460 3.26373 3.31681 3.33302 3.76273 4.15932 4.29186 4.36138 4.42518 4.56813 4.59766 4.63513 4.73918 4.86534 4.93185 5.02736 5.06908 5.13709 5.21271 5.32429 5.36284 5.45492 5.50598 5.55247 5.59287 5.67921 5.69868 5.77460 5.79668 5.81234 5.88246 5.94332 6.00130 6.13727 6.20241 6.29019 6.42378 6.55872 6.59578 6.69250 6.84338 6.89604 7.09111 7.33511 7.47281 7.60649 7.70140 7.86794 8.13778 8.40901 8.85297 9.19036 9.47202 10.95679 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.003931 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.481490 B = 7121.408367 C = 9879.869225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C -0.015 4.015 4 C -0.107 4.107 5 C -0.139 4.139 6 C 0.116 3.884 7 N -0.467 5.467 8 C 0.159 3.841 9 C -0.026 4.026 10 H 0.096 0.904 11 C -0.142 4.142 12 C 0.048 3.952 13 O -0.375 6.375 14 C 0.059 3.941 15 N -0.284 5.284 16 N -0.318 5.318 17 C 0.387 3.613 18 N -0.473 5.473 19 C 0.052 3.948 20 C 0.227 3.773 21 H 0.021 0.979 22 C -0.128 4.128 23 C -0.513 4.513 24 H 0.065 0.935 25 C 0.064 3.936 26 N -0.888 5.888 27 Si 0.900 3.100 28 H -0.276 1.276 29 H -0.287 1.287 30 H -0.276 1.276 31 H 0.215 0.785 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.042 0.958 49 H 0.091 0.909 50 H 0.001 0.999 51 H 0.033 0.967 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 -15.063 -5.112 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.180 4.180 3 C -0.052 4.052 4 C -0.145 4.145 5 C -0.177 4.177 6 C -0.008 4.008 7 N -0.160 5.160 8 C -0.108 4.108 9 C -0.048 4.048 10 H 0.114 0.886 11 C -0.181 4.181 12 C -0.029 4.029 13 O -0.293 6.293 14 C -0.019 4.019 15 N -0.125 5.125 16 N -0.161 5.161 17 C 0.031 3.969 18 N -0.200 5.200 19 C -0.095 4.095 20 C 0.123 3.877 21 H 0.039 0.961 22 C -0.187 4.187 23 C -0.551 4.551 24 H 0.083 0.917 25 C -0.138 4.138 26 N -0.526 5.526 27 Si 0.727 3.273 28 H -0.202 1.202 29 H -0.213 1.213 30 H -0.202 1.202 31 H 0.232 0.768 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.109 0.891 50 H 0.020 0.980 51 H 0.052 0.948 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.183 -15.080 -5.227 18.414 hybrid contribution -1.204 1.269 0.499 1.819 sum -10.387 -13.811 -4.728 17.916 Atomic orbital electron populations 1.24874 0.95962 1.01601 1.01164 1.23192 0.94600 0.99998 1.00179 1.18757 0.84559 1.02757 0.99086 1.21406 0.94253 1.00984 0.97870 1.22023 0.95382 1.03366 0.96919 1.21783 0.75821 1.02046 1.01125 1.46391 1.08175 1.20929 1.40497 1.24122 0.87780 0.95996 1.02948 1.20792 1.01023 0.89301 0.93658 0.88601 1.22978 1.00240 1.00337 0.94527 1.23422 0.97727 0.88724 0.92995 1.89103 1.84578 1.30922 1.24730 1.23453 1.00258 0.89079 0.89140 1.73898 1.17058 1.08079 1.13433 1.74732 1.17673 1.07796 1.15942 1.22837 0.84853 0.92152 0.97076 1.59290 1.59636 0.99028 1.02083 1.22174 0.99866 1.00604 0.86889 1.19409 0.93894 0.82402 0.92028 0.96114 1.21824 0.99058 1.00591 0.97192 1.20999 1.31752 0.90032 1.12331 0.91656 1.24896 0.94866 0.98865 0.95213 1.69886 1.34875 1.22546 1.25267 0.86533 0.78906 0.81548 0.80266 1.20161 1.21262 1.20195 0.76786 0.89002 0.89594 0.91546 0.90791 0.89410 0.91484 0.89773 0.87721 0.90183 0.89457 0.89011 0.91492 0.90654 0.88884 0.89436 0.94486 0.93955 0.89054 0.97981 0.94839 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.18 -1.94 13.34 -37.12 -0.50 -2.44 16 3 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.11 -0.99 5.17 -26.74 -0.14 -1.13 16 5 C -0.14 -1.54 5.54 -26.74 -0.15 -1.68 16 6 C 0.12 1.37 5.83 -4.04 -0.02 1.34 16 7 N -0.47 -7.38 2.81 -114.09 -0.32 -7.70 16 8 C 0.16 2.45 6.42 -154.01 -0.99 1.46 16 9 C -0.03 -0.30 3.53 -90.21 -0.32 -0.61 16 10 H 0.10 0.87 7.11 -51.93 -0.37 0.50 16 11 C -0.14 -1.48 6.73 -25.16 -0.17 -1.65 16 12 C 0.05 0.49 7.63 37.93 0.29 0.77 16 13 O -0.37 -4.43 11.65 -35.23 -0.41 -4.84 16 14 C 0.06 0.65 7.17 37.93 0.27 0.92 16 15 N -0.28 -5.45 11.90 32.99 0.39 -5.06 16 16 N -0.32 -6.97 12.10 30.31 0.37 -6.60 16 17 C 0.39 7.68 5.01 -318.87 -1.60 6.08 16 18 N -0.47 -9.88 4.65 -176.09 -0.82 -10.70 16 19 C 0.05 1.00 9.10 60.06 0.55 1.55 16 20 C 0.23 5.60 1.98 -68.86 -0.14 5.46 16 21 H 0.02 0.60 8.07 -51.92 -0.42 0.18 16 22 C -0.13 -3.07 8.54 37.16 0.32 -2.75 16 23 C -0.51 -13.27 7.98 -34.45 -0.28 -13.54 16 24 H 0.07 1.64 6.41 -52.49 -0.34 1.30 16 25 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 26 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 27 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 31 H 0.22 1.34 7.80 -54.09 -0.42 0.92 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.25 6.75 -51.93 -0.35 0.90 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.74 7.42 -51.93 -0.39 0.36 16 39 H 0.10 1.31 8.13 -51.93 -0.42 0.88 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.08 7.73 -51.93 -0.40 0.68 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.97 7.64 -51.93 -0.40 0.57 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.65 6.47 -51.93 -0.34 1.32 16 47 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 48 H 0.04 0.70 8.06 -51.93 -0.42 0.29 16 49 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 50 H 0.00 0.03 7.22 -51.93 -0.38 -0.35 16 51 H 0.03 0.75 7.09 -51.93 -0.37 0.38 16 52 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 421.19 15.07 6.35 6.35 Total: -1.00 -31.49 421.19 -10.07 -41.56 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.68 Total: 2.04 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.56 Total: -6.48 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.25 Total: -54.07 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.41 Total: -4.84 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -31.49 -10.07 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587766511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.933 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds