Wall clock time and date at job start Wed Apr 1 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47539 * 298.92538 * 3 2 1 5 5 C 1.52994 * 109.47480 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47480 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47197 * 180.02562 * 6 5 4 8 8 C 1.36744 * 127.13357 * 274.28316 * 7 6 5 9 9 C 1.50694 * 126.34703 * 359.96674 * 8 7 6 10 10 H 1.09003 * 110.45926 * 357.68157 * 9 8 7 11 11 C 1.54505 * 110.51177 * 120.28603 * 9 8 7 12 12 C 1.54480 * 104.06399 * 118.64406 * 11 9 8 13 13 O 1.44427 * 104.80199 * 23.97923 * 12 11 9 14 14 C 1.44420 * 105.27386 * 319.48966 * 13 12 11 15 15 N 1.30295 * 107.30365 * 180.23166 * 8 7 6 16 16 N 1.28525 * 110.05211 * 359.77029 * 15 8 7 17 17 C 1.31212 * 109.86504 * 0.02562 * 16 15 8 18 18 N 1.38588 * 126.47786 * 179.97438 * 17 16 15 19 19 C 1.46898 * 111.00019 * 294.03983 * 18 17 16 20 20 C 1.46900 * 110.99796 * 57.98940 * 18 17 16 21 21 H 1.09007 * 109.47402 * 300.00267 * 20 18 17 22 22 C 1.53005 * 109.47278 * 59.99990 * 20 18 17 23 23 C 1.50694 * 109.47504 * 179.97438 * 20 18 17 24 24 H 1.08002 * 119.99589 * 0.02562 * 23 20 18 25 25 C 1.37869 * 120.00411 * 180.02562 * 23 20 18 26 26 N 1.31515 * 119.99976 * 359.97438 * 25 23 20 27 27 Si 1.86804 * 120.00038 * 180.02562 * 25 23 20 28 28 H 1.48503 * 109.47165 * 60.00167 * 27 25 23 29 29 H 1.48506 * 109.47203 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47154 * 299.99975 * 27 25 23 31 31 H 4.44655 * 5.63413 * 179.97438 * 4 1 2 32 32 H 1.09001 * 109.46657 * 178.91852 * 3 2 1 33 33 H 1.09004 * 109.47082 * 58.92391 * 3 2 1 34 34 H 1.08992 * 109.47255 * 59.99542 * 4 3 2 35 35 H 1.09004 * 109.46814 * 300.00018 * 4 3 2 36 36 H 1.08999 * 109.47152 * 59.99685 * 5 4 3 37 37 H 1.09004 * 109.46933 * 299.99726 * 5 4 3 38 38 H 1.08992 * 109.47255 * 59.99323 * 6 5 4 39 39 H 1.09004 * 109.46814 * 299.99798 * 6 5 4 40 40 H 1.09000 * 110.51285 * 237.28956 * 11 9 8 41 41 H 1.09003 * 110.51071 * 359.86428 * 11 9 8 42 42 H 1.08997 * 110.37318 * 142.81332 * 12 11 9 43 43 H 1.09000 * 110.37342 * 265.14535 * 12 11 9 44 44 H 1.09005 * 110.37119 * 281.67565 * 14 13 12 45 45 H 1.08999 * 110.37270 * 159.34691 * 14 13 12 46 46 H 1.08993 * 109.47175 * 189.89415 * 19 18 17 47 47 H 1.08994 * 109.47267 * 69.89232 * 19 18 17 48 48 H 1.09001 * 109.46550 * 309.89089 * 19 18 17 49 49 H 1.09002 * 109.47262 * 180.02562 * 22 20 18 50 50 H 1.09000 * 109.46936 * 300.00292 * 22 20 18 51 51 H 1.08999 * 109.46874 * 60.00076 * 22 20 18 52 52 H 0.97003 * 119.99666 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.6968 1.2625 5 6 4.6863 -0.6955 1.2628 6 6 5.1967 -1.3924 2.5255 7 7 6.6617 -1.3906 2.5261 8 6 7.4886 -2.3018 1.9294 9 6 7.0618 -3.5116 1.1388 10 1 5.9753 -3.5987 1.1323 11 6 7.6074 -3.4350 -0.3047 12 6 8.5176 -4.6771 -0.4284 13 8 8.0171 -5.6014 0.5621 14 6 7.7068 -4.7909 1.7164 15 7 8.7137 -1.9332 2.1761 16 7 8.7171 -0.8568 2.8784 17 6 7.4843 -0.4781 3.1200 18 7 7.0916 0.6355 3.8454 19 6 7.4733 0.5051 5.2580 20 6 7.6442 1.8653 3.2623 21 1 8.7330 1.8119 3.2658 22 6 7.1458 2.0163 1.8236 23 6 7.1964 3.0523 4.0755 24 1 6.5648 2.9075 4.9396 25 6 7.5929 4.3231 3.7167 26 7 8.3625 4.4993 2.6649 27 14 7.0383 5.7943 4.7253 28 1 7.5227 5.6483 6.1215 29 1 7.5969 7.0376 4.1357 30 1 5.5551 5.8667 4.7209 31 1 -1.0499 0.0000 0.0003 32 1 3.0088 1.0283 -0.0194 33 1 3.0096 -0.5297 -0.8802 34 1 2.7935 -1.7243 1.2818 35 1 2.7928 -0.1665 2.1427 36 1 5.0488 0.3323 1.2437 37 1 5.0503 -1.2256 0.3826 38 1 4.8342 -2.4200 2.5452 39 1 4.8328 -0.8619 3.4055 40 1 6.7908 -3.4867 -1.0249 41 1 8.1838 -2.5209 -0.4472 42 1 8.4365 -5.1091 -1.4258 43 1 9.5525 -4.4123 -0.2117 44 1 8.6174 -4.5436 2.2622 45 1 7.0030 -5.3104 2.3668 46 1 7.0046 1.3014 5.8360 47 1 8.5569 0.5789 5.3498 48 1 7.1416 -0.4620 5.6361 49 1 7.5562 2.9286 1.3907 50 1 7.4694 1.1578 1.2350 51 1 6.0572 2.0698 1.8200 52 1 8.6418 5.3934 2.4126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587766511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:05 Heat of formation + Delta-G solvation = 69.121346 kcal Electronic energy + Delta-G solvation = -31713.736514 eV Core-core repulsion = 27715.605723 eV Total energy + Delta-G solvation = -3998.130791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.03422 -40.26952 -38.75779 -37.75355 -35.75263 -34.99091 -33.94536 -33.13944 -31.40244 -30.74993 -29.81718 -29.40857 -27.48521 -26.18328 -25.61964 -24.53282 -23.53276 -23.17103 -22.36659 -21.29037 -20.73035 -18.94830 -18.50690 -18.07486 -17.64738 -17.24798 -16.98275 -16.81739 -16.54412 -16.32152 -16.01479 -15.58271 -15.26992 -15.13755 -14.95875 -14.52160 -14.23713 -14.10356 -13.98775 -13.69693 -13.40433 -13.10140 -13.08306 -12.90250 -12.82992 -12.70883 -12.63453 -12.59628 -12.37928 -12.31285 -12.20229 -12.13614 -12.05181 -11.92212 -11.63542 -11.46133 -11.26337 -11.09768 -10.96139 -10.88399 -10.78078 -10.57274 -9.93016 -9.54346 -8.14665 -6.28850 0.73625 1.31480 1.45637 1.46806 1.54438 1.80187 1.92214 1.95759 2.41226 2.83973 3.01972 3.17228 3.35524 3.48274 3.56906 3.66926 3.75632 3.87776 3.99686 4.10031 4.15524 4.18922 4.26636 4.31199 4.40850 4.47401 4.56162 4.58070 4.63339 4.68706 4.73436 4.75692 4.76877 4.80940 4.86310 4.87810 4.92923 4.99870 5.01911 5.04196 5.08161 5.12241 5.22840 5.31051 5.33843 5.38209 5.56578 5.64068 5.75100 5.90673 5.97385 6.14572 6.62796 6.74661 6.81544 7.40528 7.76642 8.92086 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.003931 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.481490 B = 7121.408367 C = 9879.869225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.216 4.216 3 C -0.016 4.016 4 C -0.095 4.095 5 C -0.129 4.129 6 C 0.107 3.893 7 N -0.459 5.459 8 C 0.187 3.813 9 C -0.026 4.026 10 H 0.133 0.867 11 C -0.139 4.139 12 C 0.046 3.954 13 O -0.382 6.382 14 C 0.060 3.940 15 N -0.322 5.322 16 N -0.364 5.364 17 C 0.367 3.633 18 N -0.464 5.464 19 C 0.056 3.944 20 C 0.238 3.762 21 H -0.032 1.032 22 C -0.105 4.105 23 C -0.522 4.522 24 H 0.073 0.927 25 C 0.015 3.985 26 N -0.921 5.921 27 Si 0.966 3.034 28 H -0.270 1.270 29 H -0.288 1.288 30 H -0.266 1.266 31 H 0.243 0.757 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.013 0.987 48 H 0.070 0.930 49 H 0.063 0.937 50 H -0.001 1.001 51 H 0.043 0.957 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 -16.989 -5.318 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.216 4.216 3 C -0.053 4.053 4 C -0.133 4.133 5 C -0.168 4.168 6 C -0.015 4.015 7 N -0.151 5.151 8 C -0.082 4.082 9 C -0.047 4.047 10 H 0.151 0.849 11 C -0.177 4.177 12 C -0.030 4.030 13 O -0.301 6.301 14 C -0.017 4.017 15 N -0.162 5.162 16 N -0.207 5.207 17 C 0.009 3.991 18 N -0.190 5.190 19 C -0.092 4.092 20 C 0.132 3.868 21 H -0.014 1.014 22 C -0.163 4.163 23 C -0.561 4.561 24 H 0.091 0.909 25 C -0.184 4.184 26 N -0.560 5.560 27 Si 0.791 3.209 28 H -0.195 1.195 29 H -0.214 1.214 30 H -0.191 1.191 31 H 0.259 0.741 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.138 0.862 46 H 0.108 0.892 47 H 0.032 0.968 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.018 0.982 51 H 0.062 0.938 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.539 -17.032 -5.426 21.834 hybrid contribution -0.167 1.755 0.497 1.832 sum -12.706 -15.277 -4.929 20.472 Atomic orbital electron populations 1.25684 0.96910 1.00316 0.99998 1.23602 0.95385 1.01228 1.01350 1.18758 0.84400 1.02220 0.99888 1.21304 0.92474 1.02236 0.97287 1.21914 0.96690 1.01117 0.97045 1.22200 0.73218 1.04791 1.01261 1.46558 1.09579 1.19673 1.39283 1.24938 0.86664 0.95973 1.00625 1.21129 1.03170 0.87102 0.93290 0.84874 1.22985 1.00925 0.99202 0.94632 1.23522 0.96894 0.88674 0.93941 1.89106 1.84571 1.31401 1.25019 1.23449 0.99816 0.89232 0.89240 1.73817 1.19445 1.08106 1.14852 1.74612 1.19502 1.09247 1.17331 1.22676 0.85342 0.92740 0.98326 1.59196 1.58786 0.98363 1.02672 1.22184 0.98461 1.02237 0.86309 1.19053 0.90854 0.84259 0.92631 1.01387 1.21528 0.99241 0.98931 0.96644 1.21295 1.31596 0.90577 1.12597 0.90872 1.25736 0.94822 1.01702 0.96154 1.70045 1.36063 1.22997 1.26869 0.85492 0.78849 0.77823 0.78776 1.19456 1.21404 1.19074 0.74074 0.90479 0.88265 0.89097 0.91659 0.93180 0.90245 0.85346 0.88274 0.87101 0.91995 0.86402 0.92995 0.93165 0.86247 0.89175 0.96773 0.91162 0.91837 0.98236 0.93804 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.61 19.25 74.32 1.43 -2.18 16 2 C -0.22 -4.25 13.34 31.13 0.42 -3.84 16 3 C -0.02 -0.28 5.70 28.79 0.16 -0.12 16 4 C -0.09 -1.51 5.17 30.59 0.16 -1.35 16 5 C -0.13 -2.60 5.54 30.59 0.17 -2.43 16 6 C 0.11 2.23 5.83 86.38 0.50 2.73 16 7 N -0.46 -14.00 2.81 -514.87 -1.45 -15.44 16 8 C 0.19 5.55 6.42 137.64 0.88 6.43 16 9 C -0.03 -0.50 3.53 -10.53 -0.04 -0.54 16 10 H 0.13 1.66 7.11 -2.39 -0.02 1.65 16 11 C -0.14 -2.54 6.73 31.61 0.21 -2.33 16 12 C 0.05 0.84 7.63 72.49 0.55 1.39 16 13 O -0.38 -8.05 11.65 -148.98 -1.74 -9.79 16 14 C 0.06 1.20 7.17 72.48 0.52 1.72 16 15 N -0.32 -12.71 11.90 -49.54 -0.59 -13.30 16 16 N -0.36 -16.64 12.10 -58.00 -0.70 -17.34 16 17 C 0.37 14.86 5.01 260.11 1.30 16.16 16 18 N -0.46 -19.85 4.65 -711.01 -3.30 -23.16 16 19 C 0.06 2.17 9.10 127.69 1.16 3.34 16 20 C 0.24 12.26 1.98 44.17 0.09 12.35 16 21 H -0.03 -1.93 8.07 -2.38 -0.02 -1.95 16 22 C -0.11 -5.25 8.54 71.98 0.61 -4.63 16 23 C -0.52 -27.63 7.98 25.60 0.20 -27.43 16 24 H 0.07 3.68 6.41 -2.91 -0.02 3.66 16 25 C 0.02 0.82 5.30 84.65 0.45 1.27 16 26 N -0.92 -52.94 11.32 21.44 0.24 -52.69 16 27 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 30 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 31 H 0.24 2.26 7.80 -4.42 -0.03 2.22 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.41 6.75 -2.39 -0.02 1.39 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.13 1.60 7.42 -2.39 -0.02 1.58 16 39 H 0.10 2.25 8.13 -2.39 -0.02 2.23 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.48 7.73 -2.39 -0.02 1.47 16 42 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 1.26 7.64 -2.38 -0.02 1.24 16 45 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 3.42 6.47 -2.39 -0.02 3.40 16 47 H 0.01 0.59 8.12 -2.39 -0.02 0.57 16 48 H 0.07 2.32 8.06 -2.39 -0.02 2.30 16 49 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 50 H 0.00 -0.07 7.22 -2.39 -0.02 -0.08 16 51 H 0.04 2.03 7.09 -2.39 -0.02 2.02 16 52 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -73.10 421.19 4.18 -68.92 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.89 Total: 17.99 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 8.79 Total: 0.55 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -5.80 Total: -121.94 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -1.74 Total: -9.79 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -73.10 4.18 -68.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587766511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.041 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds