Wall clock time and date at job start Wed Apr 1 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47290 * 2 1 4 4 N 1.46908 * 109.46927 * 240.00249 * 2 1 3 5 5 C 1.46898 * 110.99677 * 84.99745 * 4 2 1 6 6 C 1.52995 * 109.47164 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47167 * 59.99604 * 6 5 4 8 8 O 1.42904 * 109.47246 * 300.00355 * 6 5 4 9 9 C 1.52997 * 109.47484 * 180.02562 * 6 5 4 10 10 N 1.46905 * 109.47269 * 180.46634 * 9 6 5 11 11 C 1.46900 * 110.99603 * 199.84921 * 10 9 6 12 12 C 1.46902 * 111.00256 * 75.89532 * 10 9 6 13 13 C 1.50701 * 109.46791 * 190.00161 * 12 10 9 14 14 H 1.07996 * 120.00381 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99561 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00057 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47131 * 89.99556 * 17 15 13 19 19 H 1.48500 * 109.47255 * 209.99630 * 17 15 13 20 20 H 1.48504 * 109.46902 * 329.99880 * 17 15 13 21 21 C 1.50696 * 109.47514 * 120.00696 * 2 1 3 22 22 N 1.30108 * 124.95662 * 75.02081 * 21 2 1 23 23 C 1.35781 * 109.64753 * 179.97438 * 22 21 2 24 24 C 1.39742 * 133.60099 * 180.02562 * 23 22 21 25 25 C 1.36605 * 119.88224 * 179.22447 * 24 23 22 26 26 C 1.38772 * 120.67085 * 0.63677 * 25 24 23 27 27 C 1.37856 * 120.45171 * 359.59496 * 26 25 24 28 28 C 1.38828 * 119.68615 * 0.02562 * 27 26 25 29 29 N 1.36042 * 124.94779 * 255.00190 * 21 2 1 30 30 C 1.46500 * 126.34929 * 0.02562 * 29 21 2 31 31 H 1.08991 * 109.47690 * 59.99899 * 1 2 3 32 32 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46952 * 299.98994 * 1 2 3 34 34 H 1.00901 * 111.00052 * 208.94946 * 4 2 1 35 35 H 1.08999 * 109.47415 * 299.99880 * 5 4 2 36 36 H 1.09000 * 109.47367 * 60.00429 * 5 4 2 37 37 H 0.96699 * 114.00087 * 299.99823 * 8 6 5 38 38 H 1.08999 * 109.46836 * 300.46045 * 9 6 5 39 39 H 1.08999 * 109.47534 * 60.46453 * 9 6 5 40 40 H 1.09002 * 109.47503 * 64.82410 * 11 10 9 41 41 H 1.09006 * 109.46836 * 184.81563 * 11 10 9 42 42 H 1.08996 * 109.47526 * 304.81497 * 11 10 9 43 43 H 1.09000 * 109.46497 * 309.99778 * 12 10 9 44 44 H 1.09002 * 109.47088 * 69.99836 * 12 10 9 45 45 H 0.97007 * 120.00272 * 180.02562 * 16 15 13 46 46 H 1.08005 * 120.05835 * 359.95825 * 24 23 22 47 47 H 1.08003 * 119.66744 * 180.23310 * 25 24 23 48 48 H 1.08002 * 119.77891 * 179.62096 * 26 25 24 49 49 H 1.07999 * 120.15901 * 179.97438 * 27 26 25 50 50 H 1.08997 * 109.47219 * 90.00277 * 30 29 21 51 51 H 1.09008 * 109.46872 * 210.00553 * 30 29 21 52 52 H 1.08998 * 109.46925 * 329.99740 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5960 -0.5326 -3.5743 7 1 1.9200 -1.3565 -3.8031 8 8 3.9011 -1.0484 -3.3044 9 6 2.6619 0.4206 -4.7691 10 7 3.1446 -0.3074 -5.9503 11 6 3.6652 0.6200 -6.9637 12 6 2.0884 -1.1608 -6.5107 13 6 2.6795 -2.0692 -7.5579 14 1 3.7341 -2.0174 -7.7848 15 6 1.8736 -2.9656 -8.2271 16 7 0.5893 -3.0284 -7.9512 17 14 2.6060 -4.0912 -9.5256 18 1 3.0581 -5.3540 -8.8882 19 1 1.5783 -4.3958 -10.5534 20 1 3.7639 -3.4185 -10.1676 21 6 2.0324 -0.7105 1.2303 22 7 2.0211 -2.0000 1.4033 23 6 2.5456 -2.3022 2.6187 24 6 2.7693 -3.5012 3.3007 25 6 3.3441 -3.4824 4.5398 26 6 3.6980 -2.2812 5.1378 27 6 3.4823 -1.0859 4.4858 28 6 2.9064 -1.0859 3.2226 29 7 2.5643 -0.0971 2.3219 30 6 2.7457 1.3450 2.5052 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 2.9173 -1.1205 -1.0289 35 1 1.0869 0.6164 -2.5525 36 1 2.7587 1.0463 -2.1183 37 1 4.5562 -0.3695 -3.0924 38 1 1.6681 0.8206 -4.9700 39 1 3.3445 1.2398 -4.5433 40 1 4.5458 1.1292 -6.5721 41 1 3.9366 0.0630 -7.8606 42 1 2.8998 1.3556 -7.2106 43 1 1.6469 -1.7618 -5.7157 44 1 1.3188 -0.5361 -6.9641 45 1 0.0223 -3.6594 -8.4218 46 1 2.4993 -4.4419 2.8439 47 1 3.5189 -4.4114 5.0622 48 1 4.1459 -2.2827 6.1206 49 1 3.7591 -0.1538 4.9558 50 1 1.8550 1.7671 2.9705 51 1 3.6096 1.5240 3.1454 52 1 2.9078 1.8169 1.5361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646519430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:46 Heat of formation + Delta-G solvation = 36.201142 kcal Electronic energy + Delta-G solvation = -30075.878019 eV Core-core repulsion = 26076.319700 eV Total energy + Delta-G solvation = -3999.558319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.45491 -38.49727 -37.74220 -36.28824 -35.17379 -34.49928 -32.43477 -31.54151 -30.73652 -29.19974 -28.79908 -27.31679 -27.23288 -25.74450 -24.20504 -23.16650 -22.40902 -21.64296 -21.38050 -20.14845 -19.77205 -17.68321 -17.37640 -16.72856 -16.35400 -16.22352 -15.96355 -15.43439 -15.10663 -14.69610 -14.66036 -14.34844 -14.27996 -14.16511 -13.93106 -13.65621 -13.40955 -13.30467 -13.15148 -12.67474 -12.48273 -12.32221 -12.23583 -12.00761 -11.88889 -11.69122 -11.66030 -11.44602 -11.27675 -11.11230 -10.86519 -10.67498 -10.62192 -10.56817 -10.30756 -10.04613 -9.71842 -9.60207 -9.08823 -8.57308 -8.50522 -8.35777 -8.31444 -7.16539 -5.95492 -3.95893 0.69558 1.27611 2.22156 2.52642 3.38345 3.43961 3.47103 3.66282 3.78904 3.85037 4.19086 4.26544 4.49105 4.56630 4.67473 4.72276 4.74790 4.78224 4.88357 4.96966 5.08234 5.13802 5.19269 5.24462 5.28988 5.36551 5.40886 5.47440 5.50042 5.62163 5.66281 5.72602 5.79837 5.86493 6.04754 6.11444 6.14787 6.18365 6.27486 6.31081 6.33869 6.55605 6.62772 6.74525 6.77946 6.92087 7.30388 7.34984 7.36884 7.74426 7.85939 8.10194 8.16802 8.26398 8.61413 9.11010 9.67643 11.15558 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002030 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.500799 B =13787.470572 C =14652.304465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.057 0.943 4 N -0.661 5.661 5 C 0.029 3.971 6 C 0.117 3.883 7 H 0.113 0.887 8 O -0.538 6.538 9 C 0.027 3.973 10 N -0.531 5.531 11 C 0.038 3.962 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.277 3.723 22 N -0.460 5.460 23 C 0.045 3.955 24 C -0.059 4.059 25 C -0.132 4.132 26 C -0.103 4.103 27 C -0.113 4.113 28 C 0.045 3.955 29 N -0.494 5.494 30 C 0.077 3.923 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.356 0.644 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.357 0.643 38 H 0.033 0.967 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.007 0.993 43 H 0.033 0.967 44 H -0.012 1.012 45 H 0.261 0.739 46 H 0.131 0.869 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.119 0.881 50 H 0.076 0.924 51 H 0.084 0.916 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 11.576 27.344 29.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.057 3.943 3 H 0.074 0.926 4 N -0.295 5.295 5 C -0.101 4.101 6 C 0.057 3.943 7 H 0.131 0.869 8 O -0.340 6.340 9 C -0.103 4.103 10 N -0.255 5.255 11 C -0.111 4.111 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.200 1.200 21 C 0.011 3.989 22 N -0.179 5.179 23 C -0.074 4.074 24 C -0.078 4.078 25 C -0.152 4.152 26 C -0.123 4.123 27 C -0.134 4.134 28 C -0.063 4.063 29 N -0.184 5.184 30 C -0.065 4.065 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.177 0.823 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.202 0.798 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.026 0.974 43 H 0.051 0.949 44 H 0.006 0.994 45 H 0.070 0.930 46 H 0.149 0.851 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.137 0.863 50 H 0.094 0.906 51 H 0.103 0.897 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.132 9.887 26.582 28.533 hybrid contribution 0.874 1.763 -0.021 1.968 sum 4.006 11.650 26.561 29.279 Atomic orbital electron populations 1.21794 0.92080 1.04096 1.01503 1.19984 0.96976 0.93533 0.83807 0.92584 1.60346 1.35394 1.31721 1.02079 1.22806 1.01520 0.93712 0.92067 1.21969 0.85111 0.97319 0.89890 0.86885 1.86741 1.19125 1.36318 1.91861 1.22654 0.98451 0.95512 0.93671 1.62025 1.37870 1.20014 1.05570 1.22224 0.97261 0.94755 0.96839 1.19776 0.87721 0.91108 0.94657 1.21142 0.95191 1.18743 1.19209 0.91920 1.24985 0.94828 0.97394 0.97489 1.69957 1.04322 1.37073 1.42496 0.86504 0.78627 0.81155 0.81142 1.20573 1.21415 1.19955 1.23636 0.96717 0.88593 0.89961 1.70508 1.20445 1.11087 1.15811 1.19174 1.02764 0.93119 0.92297 1.20101 0.97834 0.95911 0.93963 1.20648 1.00905 0.98270 0.95426 1.20870 1.00156 0.91545 0.99702 1.19899 1.02610 0.98898 0.91997 1.18890 1.04436 0.89049 0.93968 1.45174 1.51543 1.06806 1.14910 1.21985 1.03300 0.77293 1.03964 0.91195 0.90422 0.92841 0.82277 0.89942 0.95457 0.79846 0.94859 0.92450 0.93876 0.90443 0.97445 0.94928 0.99419 0.92989 0.85137 0.85358 0.85406 0.86315 0.90582 0.89685 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.40 37.16 0.35 -1.04 16 2 C 0.17 1.78 2.97 -68.86 -0.20 1.58 16 3 H 0.06 0.46 6.33 -51.93 -0.33 0.13 16 4 N -0.66 -8.57 6.28 -107.95 -0.68 -9.25 16 5 C 0.03 0.35 5.19 -3.83 -0.02 0.33 16 6 C 0.12 1.91 3.30 -26.74 -0.09 1.82 16 7 H 0.11 2.29 6.78 -51.93 -0.35 1.94 16 8 O -0.54 -9.07 12.55 -35.23 -0.44 -9.52 16 9 C 0.03 0.46 4.66 -3.82 -0.02 0.44 16 10 N -0.53 -11.54 4.56 -244.36 -1.11 -12.65 16 11 C 0.04 0.74 9.37 60.06 0.56 1.30 16 12 C 0.19 5.10 4.55 -4.97 -0.02 5.08 16 13 C -0.50 -14.56 8.39 -34.44 -0.29 -14.85 16 14 H 0.06 1.80 7.16 -52.49 -0.38 1.43 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 17 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.28 3.36 6.36 -154.82 -0.98 2.37 16 22 N -0.46 -6.84 11.24 -8.24 -0.09 -6.93 16 23 C 0.05 0.61 7.23 -84.70 -0.61 -0.01 16 24 C -0.06 -0.66 10.05 -39.61 -0.40 -1.06 16 25 C -0.13 -1.14 9.96 -39.97 -0.40 -1.54 16 26 C -0.10 -0.81 10.03 -39.52 -0.40 -1.20 16 27 C -0.11 -0.99 10.05 -39.50 -0.40 -1.39 16 28 C 0.05 0.51 6.87 -83.99 -0.58 -0.06 16 29 N -0.49 -4.95 3.21 -118.50 -0.38 -5.33 16 30 C 0.08 0.42 10.92 59.85 0.65 1.07 16 31 H 0.07 0.66 7.45 -51.93 -0.39 0.28 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.36 5.06 7.74 -39.29 -0.30 4.75 16 35 H 0.08 0.96 7.44 -51.93 -0.39 0.58 16 36 H 0.03 0.28 8.06 -51.93 -0.42 -0.14 16 37 H 0.36 4.51 9.04 45.56 0.41 4.92 16 38 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 39 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 42 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 43 H 0.03 0.93 6.63 -51.93 -0.34 0.59 16 44 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 48 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 52 H 0.09 0.36 6.87 -51.93 -0.36 0.01 16 LS Contribution 420.34 15.07 6.33 6.33 Total: -1.00 -35.41 420.34 -11.39 -46.80 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.80 Total: 5.52 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.94 Total: -5.67 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -1.53 Total: -60.73 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.44 Total: -9.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.41 -11.39 -46.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646519430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.006 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds