Wall clock time and date at job start Wed Apr 1 2020 04:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47290 * 2 1 4 4 N 1.46908 * 109.46927 * 240.00249 * 2 1 3 5 5 C 1.46898 * 110.99677 * 84.99745 * 4 2 1 6 6 C 1.52995 * 109.47164 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.47167 * 59.99604 * 6 5 4 8 8 O 1.42904 * 109.47246 * 300.00355 * 6 5 4 9 9 C 1.52997 * 109.47484 * 180.02562 * 6 5 4 10 10 N 1.46905 * 109.47269 * 180.46634 * 9 6 5 11 11 C 1.46900 * 110.99603 * 199.84921 * 10 9 6 12 12 C 1.46902 * 111.00256 * 75.89532 * 10 9 6 13 13 C 1.50701 * 109.46791 * 190.00161 * 12 10 9 14 14 H 1.07996 * 120.00381 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99561 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00057 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47131 * 89.99556 * 17 15 13 19 19 H 1.48500 * 109.47255 * 209.99630 * 17 15 13 20 20 H 1.48504 * 109.46902 * 329.99880 * 17 15 13 21 21 C 1.50696 * 109.47514 * 120.00696 * 2 1 3 22 22 N 1.30108 * 124.95662 * 75.02081 * 21 2 1 23 23 C 1.35781 * 109.64753 * 179.97438 * 22 21 2 24 24 C 1.39742 * 133.60099 * 180.02562 * 23 22 21 25 25 C 1.36605 * 119.88224 * 179.22447 * 24 23 22 26 26 C 1.38772 * 120.67085 * 0.63677 * 25 24 23 27 27 C 1.37856 * 120.45171 * 359.59496 * 26 25 24 28 28 C 1.38828 * 119.68615 * 0.02562 * 27 26 25 29 29 N 1.36042 * 124.94779 * 255.00190 * 21 2 1 30 30 C 1.46500 * 126.34929 * 0.02562 * 29 21 2 31 31 H 1.08991 * 109.47690 * 59.99899 * 1 2 3 32 32 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46952 * 299.98994 * 1 2 3 34 34 H 1.00901 * 111.00052 * 208.94946 * 4 2 1 35 35 H 1.08999 * 109.47415 * 299.99880 * 5 4 2 36 36 H 1.09000 * 109.47367 * 60.00429 * 5 4 2 37 37 H 0.96699 * 114.00087 * 299.99823 * 8 6 5 38 38 H 1.08999 * 109.46836 * 300.46045 * 9 6 5 39 39 H 1.08999 * 109.47534 * 60.46453 * 9 6 5 40 40 H 1.09002 * 109.47503 * 64.82410 * 11 10 9 41 41 H 1.09006 * 109.46836 * 184.81563 * 11 10 9 42 42 H 1.08996 * 109.47526 * 304.81497 * 11 10 9 43 43 H 1.09000 * 109.46497 * 309.99778 * 12 10 9 44 44 H 1.09002 * 109.47088 * 69.99836 * 12 10 9 45 45 H 0.97007 * 120.00272 * 180.02562 * 16 15 13 46 46 H 1.08005 * 120.05835 * 359.95825 * 24 23 22 47 47 H 1.08003 * 119.66744 * 180.23310 * 25 24 23 48 48 H 1.08002 * 119.77891 * 179.62096 * 26 25 24 49 49 H 1.07999 * 120.15901 * 179.97438 * 27 26 25 50 50 H 1.08997 * 109.47219 * 90.00277 * 30 29 21 51 51 H 1.09008 * 109.46872 * 210.00553 * 30 29 21 52 52 H 1.08998 * 109.46925 * 329.99740 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5960 -0.5326 -3.5743 7 1 1.9200 -1.3565 -3.8031 8 8 3.9011 -1.0484 -3.3044 9 6 2.6619 0.4206 -4.7691 10 7 3.1446 -0.3074 -5.9503 11 6 3.6652 0.6200 -6.9637 12 6 2.0884 -1.1608 -6.5107 13 6 2.6795 -2.0692 -7.5579 14 1 3.7341 -2.0174 -7.7848 15 6 1.8736 -2.9656 -8.2271 16 7 0.5893 -3.0284 -7.9512 17 14 2.6060 -4.0912 -9.5256 18 1 3.0581 -5.3540 -8.8882 19 1 1.5783 -4.3958 -10.5534 20 1 3.7639 -3.4185 -10.1676 21 6 2.0324 -0.7105 1.2303 22 7 2.0211 -2.0000 1.4033 23 6 2.5456 -2.3022 2.6187 24 6 2.7693 -3.5012 3.3007 25 6 3.3441 -3.4824 4.5398 26 6 3.6980 -2.2812 5.1378 27 6 3.4823 -1.0859 4.4858 28 6 2.9064 -1.0859 3.2226 29 7 2.5643 -0.0971 2.3219 30 6 2.7457 1.3450 2.5052 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 2.9173 -1.1205 -1.0289 35 1 1.0869 0.6164 -2.5525 36 1 2.7587 1.0463 -2.1183 37 1 4.5562 -0.3695 -3.0924 38 1 1.6681 0.8206 -4.9700 39 1 3.3445 1.2398 -4.5433 40 1 4.5458 1.1292 -6.5721 41 1 3.9366 0.0630 -7.8606 42 1 2.8998 1.3556 -7.2106 43 1 1.6469 -1.7618 -5.7157 44 1 1.3188 -0.5361 -6.9641 45 1 0.0223 -3.6594 -8.4218 46 1 2.4993 -4.4419 2.8439 47 1 3.5189 -4.4114 5.0622 48 1 4.1459 -2.2827 6.1206 49 1 3.7591 -0.1538 4.9558 50 1 1.8550 1.7671 2.9705 51 1 3.6096 1.5240 3.1454 52 1 2.9078 1.8169 1.5361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646519430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:44 Heat of formation + Delta-G solvation = 8.612438 kcal Electronic energy + Delta-G solvation = -30077.074355 eV Core-core repulsion = 26076.319700 eV Total energy + Delta-G solvation = -4000.754655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.21128 -39.69559 -38.63086 -37.54724 -36.47290 -35.21196 -34.59767 -32.56780 -31.42037 -30.40775 -29.67651 -29.22418 -27.85578 -27.01679 -25.56933 -24.57694 -23.18665 -22.75984 -22.29586 -21.72588 -20.65291 -18.62419 -18.40044 -18.07607 -17.58028 -17.27390 -16.95691 -16.63963 -16.48755 -16.01504 -15.98832 -15.45000 -15.31776 -14.98689 -14.95104 -14.85297 -14.62259 -14.17166 -14.05011 -13.92759 -13.60506 -13.51992 -13.33129 -13.13184 -12.90960 -12.87462 -12.80796 -12.55879 -12.51980 -12.38752 -12.36675 -12.30937 -12.17774 -12.10670 -11.50993 -11.34457 -11.32102 -10.87691 -10.77466 -10.60192 -9.42433 -9.29367 -9.06682 -8.92340 -8.19530 -6.28898 -0.03963 0.55764 1.39234 1.42452 1.52426 1.56213 1.73991 2.40575 2.87487 2.92566 3.01982 3.12858 3.38377 3.49727 3.71216 3.82022 3.90491 3.97553 4.09462 4.14116 4.16723 4.23710 4.33638 4.36529 4.43985 4.45780 4.49632 4.57119 4.61081 4.62754 4.65905 4.72559 4.79579 4.82387 4.84088 4.89677 5.10013 5.14694 5.20107 5.25269 5.29295 5.32504 5.45523 5.57489 5.59480 5.65449 5.90649 5.99758 6.08411 6.17575 6.28125 6.37119 6.67253 6.87182 6.93903 7.06156 7.40177 8.91546 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002030 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.500799 B =13787.470572 C =14652.304465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.174 3.826 3 H 0.091 0.909 4 N -0.683 5.683 5 C 0.044 3.956 6 C 0.125 3.875 7 H 0.059 0.941 8 O -0.560 6.560 9 C 0.028 3.972 10 N -0.544 5.544 11 C 0.040 3.960 12 C 0.210 3.790 13 C -0.522 4.522 14 H 0.061 0.939 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.262 1.262 21 C 0.269 3.731 22 N -0.514 5.514 23 C 0.003 3.997 24 C -0.090 4.090 25 C -0.125 4.125 26 C -0.099 4.099 27 C -0.113 4.113 28 C 0.033 3.967 29 N -0.488 5.488 30 C 0.066 3.934 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.347 0.653 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.377 0.623 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.013 0.987 43 H 0.001 0.999 44 H -0.040 1.040 45 H 0.264 0.736 46 H 0.121 0.879 47 H 0.154 0.846 48 H 0.164 0.836 49 H 0.150 0.850 50 H 0.091 0.909 51 H 0.102 0.898 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 14.132 29.201 33.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.063 3.937 3 H 0.109 0.891 4 N -0.318 5.318 5 C -0.085 4.085 6 C 0.064 3.936 7 H 0.077 0.923 8 O -0.366 6.366 9 C -0.101 4.101 10 N -0.268 5.268 11 C -0.109 4.109 12 C 0.084 3.916 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.186 1.186 21 C 0.002 3.998 22 N -0.233 5.233 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.134 4.134 28 C -0.077 4.077 29 N -0.178 5.178 30 C -0.074 4.074 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.225 0.775 38 H 0.049 0.951 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.019 0.981 44 H -0.022 1.022 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.171 0.829 48 H 0.182 0.818 49 H 0.167 0.833 50 H 0.110 0.890 51 H 0.121 0.879 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.204 12.502 28.458 31.516 hybrid contribution 0.273 0.982 -0.481 1.127 sum 5.477 13.484 27.978 31.537 Atomic orbital electron populations 1.21762 0.92180 1.02373 1.02784 1.20054 0.96768 0.94643 0.82276 0.89126 1.60265 1.35058 1.33017 1.03422 1.22598 1.02423 0.93633 0.89869 1.21699 0.84360 0.95720 0.91782 0.92288 1.86689 1.19852 1.37994 1.92024 1.22769 0.99284 0.96237 0.91777 1.61919 1.36206 1.21526 1.07140 1.22241 0.98765 0.94151 0.95706 1.19356 0.88178 0.91010 0.93054 1.21484 0.95198 1.19437 1.19944 0.92106 1.25940 0.95212 0.99011 0.99823 1.70089 1.05742 1.37945 1.43729 0.85393 0.78226 0.78781 0.78274 1.20233 1.20547 1.18627 1.23775 0.96839 0.88273 0.90889 1.70400 1.22361 1.13193 1.17380 1.19601 1.04335 0.94924 0.92655 1.20290 0.99903 0.95335 0.95483 1.21004 0.99191 1.00068 0.94264 1.21345 0.98960 0.90720 1.00848 1.20329 1.01492 1.00621 0.90917 1.19221 1.04861 0.88627 0.94973 1.45366 1.50392 1.08281 1.13808 1.22371 1.04894 0.74617 1.05520 0.90399 0.93662 0.90952 0.83311 0.89340 0.91767 0.77512 0.95066 0.88225 0.89972 0.92877 0.96804 0.98135 1.02221 0.92770 0.86096 0.82855 0.81807 0.83271 0.89019 0.87910 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.40 71.98 0.68 -2.00 16 2 C 0.17 3.52 2.97 44.16 0.13 3.65 16 3 H 0.09 1.20 6.33 -2.39 -0.02 1.18 16 4 N -0.68 -17.90 6.28 -495.45 -3.11 -21.01 16 5 C 0.04 1.02 5.19 86.30 0.45 1.47 16 6 C 0.12 4.11 3.30 30.59 0.10 4.21 16 7 H 0.06 2.59 6.78 -2.39 -0.02 2.58 16 8 O -0.56 -18.89 12.55 -148.98 -1.87 -20.76 16 9 C 0.03 0.94 4.66 86.30 0.40 1.34 16 10 N -0.54 -23.76 4.56 -927.03 -4.22 -27.99 16 11 C 0.04 1.50 9.37 127.69 1.20 2.69 16 12 C 0.21 11.68 4.55 85.56 0.39 12.07 16 13 C -0.52 -31.06 8.39 25.60 0.21 -30.84 16 14 H 0.06 3.56 7.16 -2.91 -0.02 3.54 16 15 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 16 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 17 Si 0.97 46.38 29.54 68.60 2.03 48.40 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.27 6.55 6.36 137.92 0.88 7.42 16 22 N -0.51 -16.31 11.24 -179.97 -2.02 -18.33 16 23 C 0.00 0.09 7.23 39.45 0.29 0.37 16 24 C -0.09 -2.17 10.05 22.25 0.22 -1.95 16 25 C -0.13 -2.05 9.96 22.02 0.22 -1.83 16 26 C -0.10 -1.30 10.03 22.31 0.22 -1.07 16 27 C -0.11 -1.70 10.05 22.32 0.22 -1.48 16 28 C 0.03 0.71 6.87 38.86 0.27 0.98 16 29 N -0.49 -9.17 3.21 -528.83 -1.70 -10.86 16 30 C 0.07 0.51 10.92 127.77 1.39 1.90 16 31 H 0.08 1.42 7.45 -2.39 -0.02 1.40 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.35 10.14 7.74 -89.69 -0.69 9.45 16 35 H 0.09 1.94 7.44 -2.39 -0.02 1.93 16 36 H 0.06 1.04 8.06 -2.39 -0.02 1.02 16 37 H 0.38 8.87 9.04 -74.06 -0.67 8.20 16 38 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 39 H 0.10 2.49 7.94 -2.39 -0.02 2.47 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.05 2.25 6.67 -2.38 -0.02 2.23 16 42 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 43 H 0.00 0.04 6.63 -2.39 -0.02 0.02 16 44 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 45 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 46 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 49 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 50 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 52 H 0.10 0.46 6.87 -2.39 -0.02 0.45 16 Total: -1.00 -83.55 420.34 -3.31 -86.86 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.44 Total: 24.74 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 7.74 Total: -2.72 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -10.77 Total: -136.52 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.87 Total: -20.76 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -83.55 -3.31 -86.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646519430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.474 kcal (2) G-P(sol) polarization free energy of solvation -83.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds