Wall clock time and date at job start Wed Apr 1 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46661 * 2 1 4 4 N 1.46904 * 109.46839 * 119.99652 * 2 1 3 5 5 C 1.46902 * 110.99752 * 275.00004 * 4 2 1 6 6 C 1.53001 * 109.46932 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47444 * 60.00472 * 6 5 4 8 8 O 1.42903 * 109.47087 * 299.99819 * 6 5 4 9 9 C 1.53000 * 109.47104 * 180.02562 * 6 5 4 10 10 N 1.46902 * 109.47150 * 180.46281 * 9 6 5 11 11 C 1.46899 * 110.99857 * 199.84666 * 10 9 6 12 12 C 1.46898 * 111.00145 * 75.89144 * 10 9 6 13 13 C 1.50694 * 109.47197 * 189.99873 * 12 10 9 14 14 H 1.08003 * 120.00392 * 0.02562 * 13 12 10 15 15 C 1.37883 * 120.00253 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99930 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99626 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47024 * 90.00517 * 17 15 13 19 19 H 1.48498 * 109.47451 * 210.00149 * 17 15 13 20 20 H 1.48498 * 109.47796 * 330.00401 * 17 15 13 21 21 C 1.50699 * 109.47255 * 239.99650 * 2 1 3 22 22 N 1.30103 * 124.94876 * 285.01964 * 21 2 1 23 23 C 1.35786 * 109.64059 * 179.97438 * 22 21 2 24 24 C 1.39741 * 133.59762 * 180.02562 * 23 22 21 25 25 C 1.36605 * 119.88607 * 180.25255 * 24 23 22 26 26 C 1.38775 * 120.66529 * 359.48357 * 25 24 23 27 27 C 1.37853 * 120.45107 * 0.50394 * 26 25 24 28 28 C 1.38827 * 119.69372 * 359.76157 * 27 26 25 29 29 N 1.36039 * 124.94940 * 105.00061 * 21 2 1 30 30 C 1.46496 * 126.34633 * 359.97438 * 29 21 2 31 31 H 1.09005 * 109.46624 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47409 * 299.99996 * 1 2 3 33 33 H 1.09000 * 109.46910 * 60.00763 * 1 2 3 34 34 H 1.00894 * 111.00472 * 38.95729 * 4 2 1 35 35 H 1.09004 * 109.47790 * 300.00093 * 5 4 2 36 36 H 1.09004 * 109.47058 * 60.00477 * 5 4 2 37 37 H 0.96698 * 114.00112 * 300.00252 * 8 6 5 38 38 H 1.09008 * 109.47170 * 300.45916 * 9 6 5 39 39 H 1.08996 * 109.47569 * 60.46008 * 9 6 5 40 40 H 1.09001 * 109.47472 * 64.82093 * 11 10 9 41 41 H 1.08998 * 109.47107 * 184.81916 * 11 10 9 42 42 H 1.08998 * 109.47579 * 304.82112 * 11 10 9 43 43 H 1.08998 * 109.47531 * 310.00273 * 12 10 9 44 44 H 1.09004 * 109.46812 * 70.00595 * 12 10 9 45 45 H 0.97004 * 119.99498 * 180.02562 * 16 15 13 46 46 H 1.07998 * 120.05710 * 359.97438 * 24 23 22 47 47 H 1.07999 * 119.66607 * 179.70517 * 25 24 23 48 48 H 1.08001 * 119.77463 * 180.26285 * 26 25 24 49 49 H 1.08007 * 120.15409 * 179.73872 * 27 26 25 50 50 H 1.09007 * 109.46841 * 270.01608 * 30 29 21 51 51 H 1.09001 * 109.47572 * 30.01576 * 30 29 21 52 52 H 1.08999 * 109.46954 * 150.01788 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2228 2.3469 6 6 2.5961 -0.5326 3.5743 7 1 3.5916 -0.9260 3.3685 8 8 1.7098 -1.6126 3.8743 9 6 2.6609 0.4204 4.7695 10 7 3.1646 -0.3021 5.9451 11 6 2.8107 0.4000 7.1860 12 6 4.6159 -0.5100 5.8534 13 6 5.0574 -1.4568 6.9395 14 1 4.3324 -1.8638 7.6287 15 6 6.3871 -1.8035 7.0534 16 7 6.7722 -2.6302 8.0009 17 14 7.6410 -1.1001 5.8609 18 1 8.1826 0.1712 6.4049 19 1 8.7489 -2.0717 5.6773 20 1 6.9886 -0.8403 4.5524 21 6 2.0324 -0.7105 -1.2304 22 7 2.0203 -1.9999 -1.4036 23 6 2.5440 -2.3019 -2.6195 24 6 2.7659 -3.5009 -3.3022 25 6 3.3304 -3.4814 -4.5460 26 6 3.6778 -2.2797 -5.1469 27 6 3.4679 -1.0849 -4.4923 28 6 2.9003 -1.0853 -3.2254 29 7 2.5643 -0.0970 -2.3219 30 6 2.7458 1.3450 -2.5051 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 1.4497 -1.4978 1.4102 35 1 2.7588 1.0464 2.1183 36 1 1.0870 0.6165 2.5525 37 1 0.8038 -1.3357 4.0683 38 1 3.3304 1.2488 4.5378 39 1 1.6639 0.8071 4.9803 40 1 1.7272 0.4036 7.3051 41 1 3.2678 -0.1091 8.0345 42 1 3.1744 1.4264 7.1392 43 1 4.8615 -0.9340 4.8798 44 1 5.1280 0.4448 5.9736 45 1 7.7077 -2.8737 8.0812 46 1 2.4958 -4.4415 -2.8454 47 1 3.5047 -4.4104 -5.0685 48 1 4.1194 -2.2809 -6.1326 49 1 3.7440 -0.1527 -4.9627 50 1 1.8549 1.7672 -2.9701 51 1 2.9082 1.8169 -1.5361 52 1 3.6094 1.5240 -3.1456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646519432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:51 Heat of formation + Delta-G solvation = 38.760975 kcal Electronic energy + Delta-G solvation = -30203.105451 eV Core-core repulsion = 26203.658135 eV Total energy + Delta-G solvation = -3999.447316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.37841 -38.61886 -37.74925 -36.48134 -35.30198 -34.43987 -32.40486 -31.60555 -30.70374 -29.31064 -28.74557 -27.86605 -27.26126 -25.69708 -24.35987 -23.09157 -22.36413 -21.69690 -21.50774 -20.10401 -19.82632 -17.68474 -17.33013 -16.92650 -16.47778 -16.14534 -15.90408 -15.67100 -15.09064 -14.86740 -14.53795 -14.36952 -14.29415 -14.12717 -13.96285 -13.74265 -13.60284 -13.26387 -13.11519 -13.06589 -12.76363 -12.33044 -12.23871 -12.15737 -12.06138 -11.72656 -11.65884 -11.59475 -11.55879 -11.31184 -11.05832 -10.74088 -10.63845 -10.56384 -10.05901 -10.02481 -9.82541 -9.65741 -9.17533 -8.62646 -8.52354 -8.47300 -8.25276 -7.33610 -5.99904 -3.96369 0.76053 1.32607 2.27430 2.59339 3.31220 3.39780 3.42180 3.68982 3.81708 3.91828 4.22647 4.31490 4.46753 4.52591 4.63332 4.67528 4.72355 4.76062 4.79717 4.87161 4.99706 5.07142 5.14349 5.20223 5.22428 5.24088 5.32025 5.34849 5.42084 5.48921 5.56164 5.58781 5.64972 5.74940 5.89766 5.91280 6.07104 6.21913 6.22772 6.31568 6.35621 6.40756 6.63612 6.69458 6.75713 6.87144 6.93369 7.00165 7.27709 7.65248 7.79499 7.89880 8.05654 8.09495 8.70994 9.09259 9.61983 11.13430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.002370 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.679054 B =11811.112278 C =13097.802484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.164 3.836 3 H 0.092 0.908 4 N -0.667 5.667 5 C 0.030 3.970 6 C 0.116 3.884 7 H 0.108 0.892 8 O -0.536 6.536 9 C 0.024 3.976 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.161 3.839 13 C -0.505 4.505 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.267 1.267 21 C 0.301 3.699 22 N -0.473 5.473 23 C 0.048 3.952 24 C -0.062 4.062 25 C -0.132 4.132 26 C -0.106 4.106 27 C -0.112 4.112 28 C 0.044 3.956 29 N -0.493 5.493 30 C 0.077 3.923 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.364 0.636 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.360 0.640 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.008 0.992 43 H 0.030 0.970 44 H -0.019 1.019 45 H 0.263 0.737 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.118 0.882 50 H 0.074 0.926 51 H 0.087 0.913 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.986 10.231 -26.516 31.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.051 3.949 3 H 0.110 0.890 4 N -0.301 5.301 5 C -0.100 4.100 6 C 0.056 3.944 7 H 0.126 0.874 8 O -0.338 6.338 9 C -0.106 4.106 10 N -0.244 5.244 11 C -0.112 4.112 12 C 0.035 3.965 13 C -0.544 4.544 14 H 0.099 0.901 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.701 3.299 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.192 1.192 21 C 0.034 3.966 22 N -0.191 5.191 23 C -0.070 4.070 24 C -0.081 4.081 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.065 4.065 29 N -0.184 5.184 30 C -0.065 4.065 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.186 0.814 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.205 0.795 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.026 0.974 43 H 0.048 0.952 44 H -0.002 1.002 45 H 0.073 0.927 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.136 0.864 50 H 0.092 0.908 51 H 0.106 0.894 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.104 8.924 -26.118 30.137 hybrid contribution 0.248 2.406 -0.931 2.592 sum -11.856 11.329 -27.049 31.632 Atomic orbital electron populations 1.22465 0.94698 1.03822 1.02597 1.19852 0.93315 0.95837 0.85855 0.88979 1.60117 1.58352 1.09680 1.01971 1.22751 0.99823 0.95828 0.91604 1.21944 0.95240 0.87538 0.89692 0.87420 1.86744 1.22323 1.33040 1.91731 1.22720 0.99620 0.95006 0.93245 1.61845 1.16683 1.46070 0.99767 1.22270 0.99111 0.95395 0.94446 1.20233 0.82702 0.95091 0.98455 1.21019 0.93755 1.26006 1.13587 0.90099 1.24894 0.98232 0.94927 0.95308 1.69893 1.16612 1.34727 1.32762 0.86883 0.81638 0.78983 0.82371 1.20493 1.21094 1.19169 1.23440 0.95656 0.88357 0.89126 1.70393 1.21738 1.11225 1.15764 1.19129 1.02685 0.93063 0.92144 1.20068 0.98250 0.95841 0.93958 1.20633 1.01010 0.98220 0.95365 1.20850 1.00389 0.91560 0.99744 1.19897 1.02562 0.98880 0.91943 1.18867 1.04659 0.89078 0.93875 1.45101 1.51765 1.06779 1.14740 1.21974 1.03145 0.77351 1.04029 0.90852 0.91232 0.92042 0.81431 0.90465 0.94784 0.79492 0.94989 0.91850 0.93434 0.89866 0.97385 0.95247 1.00182 0.92715 0.85292 0.85441 0.85467 0.86355 0.90766 0.89406 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.14 37.16 0.34 -1.03 16 2 C 0.16 1.58 2.94 -68.86 -0.20 1.38 16 3 H 0.09 0.71 6.33 -51.93 -0.33 0.38 16 4 N -0.67 -8.00 6.21 -107.94 -0.67 -8.67 16 5 C 0.03 0.33 5.19 -3.82 -0.02 0.31 16 6 C 0.12 1.76 3.30 -26.73 -0.09 1.67 16 7 H 0.11 2.04 6.78 -51.93 -0.35 1.68 16 8 O -0.54 -8.52 12.55 -35.23 -0.44 -8.97 16 9 C 0.02 0.38 4.66 -3.82 -0.02 0.36 16 10 N -0.52 -10.86 4.56 -244.37 -1.11 -11.97 16 11 C 0.04 0.69 9.37 60.06 0.56 1.25 16 12 C 0.16 3.99 3.62 -4.98 -0.02 3.97 16 13 C -0.51 -14.73 8.94 -34.44 -0.31 -15.03 16 14 H 0.08 2.56 7.41 -52.48 -0.39 2.17 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 17 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 21 C 0.30 3.66 6.71 -154.83 -1.04 2.62 16 22 N -0.47 -6.98 11.24 -8.23 -0.09 -7.07 16 23 C 0.05 0.67 7.23 -84.70 -0.61 0.06 16 24 C -0.06 -0.72 10.05 -39.61 -0.40 -1.12 16 25 C -0.13 -1.21 9.96 -39.97 -0.40 -1.61 16 26 C -0.11 -0.89 10.03 -39.52 -0.40 -1.29 16 27 C -0.11 -1.05 10.05 -39.50 -0.40 -1.45 16 28 C 0.04 0.52 6.87 -83.99 -0.58 -0.05 16 29 N -0.49 -5.20 3.21 -118.51 -0.38 -5.58 16 30 C 0.08 0.45 10.92 59.84 0.65 1.11 16 31 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.07 0.45 7.45 -51.93 -0.39 0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.36 4.66 7.86 -39.30 -0.31 4.35 16 35 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16 36 H 0.03 0.30 7.44 -51.93 -0.39 -0.09 16 37 H 0.36 4.18 9.04 45.56 0.41 4.59 16 38 H 0.03 0.50 8.00 -51.92 -0.42 0.08 16 39 H 0.06 0.84 7.94 -51.93 -0.41 0.42 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.79 6.67 -51.93 -0.35 1.44 16 42 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 43 H 0.03 0.75 5.69 -51.93 -0.30 0.46 16 44 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 49 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 50 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.41 6.87 -51.93 -0.36 0.06 16 52 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 416.85 15.07 6.28 6.28 Total: -1.00 -36.52 416.85 -11.10 -47.61 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.77 Total: 5.27 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.02 Total: -6.93 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -1.48 Total: -60.74 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.44 Total: -8.97 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.52 -11.10 -47.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646519432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.373 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds