Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46661 * 2 1 4 4 N 1.46904 * 109.46839 * 119.99652 * 2 1 3 5 5 C 1.46902 * 110.99752 * 275.00004 * 4 2 1 6 6 C 1.53001 * 109.46932 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47444 * 60.00472 * 6 5 4 8 8 O 1.42903 * 109.47087 * 299.99819 * 6 5 4 9 9 C 1.53000 * 109.47104 * 180.02562 * 6 5 4 10 10 N 1.46902 * 109.47150 * 180.46281 * 9 6 5 11 11 C 1.46899 * 110.99857 * 199.84666 * 10 9 6 12 12 C 1.46898 * 111.00145 * 75.89144 * 10 9 6 13 13 C 1.50694 * 109.47197 * 189.99873 * 12 10 9 14 14 H 1.08003 * 120.00392 * 0.02562 * 13 12 10 15 15 C 1.37883 * 120.00253 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99930 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99626 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47024 * 90.00517 * 17 15 13 19 19 H 1.48498 * 109.47451 * 210.00149 * 17 15 13 20 20 H 1.48498 * 109.47796 * 330.00401 * 17 15 13 21 21 C 1.50699 * 109.47255 * 239.99650 * 2 1 3 22 22 N 1.30103 * 124.94876 * 285.01964 * 21 2 1 23 23 C 1.35786 * 109.64059 * 179.97438 * 22 21 2 24 24 C 1.39741 * 133.59762 * 180.02562 * 23 22 21 25 25 C 1.36605 * 119.88607 * 180.25255 * 24 23 22 26 26 C 1.38775 * 120.66529 * 359.48357 * 25 24 23 27 27 C 1.37853 * 120.45107 * 0.50394 * 26 25 24 28 28 C 1.38827 * 119.69372 * 359.76157 * 27 26 25 29 29 N 1.36039 * 124.94940 * 105.00061 * 21 2 1 30 30 C 1.46496 * 126.34633 * 359.97438 * 29 21 2 31 31 H 1.09005 * 109.46624 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47409 * 299.99996 * 1 2 3 33 33 H 1.09000 * 109.46910 * 60.00763 * 1 2 3 34 34 H 1.00894 * 111.00472 * 38.95729 * 4 2 1 35 35 H 1.09004 * 109.47790 * 300.00093 * 5 4 2 36 36 H 1.09004 * 109.47058 * 60.00477 * 5 4 2 37 37 H 0.96698 * 114.00112 * 300.00252 * 8 6 5 38 38 H 1.09008 * 109.47170 * 300.45916 * 9 6 5 39 39 H 1.08996 * 109.47569 * 60.46008 * 9 6 5 40 40 H 1.09001 * 109.47472 * 64.82093 * 11 10 9 41 41 H 1.08998 * 109.47107 * 184.81916 * 11 10 9 42 42 H 1.08998 * 109.47579 * 304.82112 * 11 10 9 43 43 H 1.08998 * 109.47531 * 310.00273 * 12 10 9 44 44 H 1.09004 * 109.46812 * 70.00595 * 12 10 9 45 45 H 0.97004 * 119.99498 * 180.02562 * 16 15 13 46 46 H 1.07998 * 120.05710 * 359.97438 * 24 23 22 47 47 H 1.07999 * 119.66607 * 179.70517 * 25 24 23 48 48 H 1.08001 * 119.77463 * 180.26285 * 26 25 24 49 49 H 1.08007 * 120.15409 * 179.73872 * 27 26 25 50 50 H 1.09007 * 109.46841 * 270.01608 * 30 29 21 51 51 H 1.09001 * 109.47572 * 30.01576 * 30 29 21 52 52 H 1.08999 * 109.46954 * 150.01788 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2228 2.3469 6 6 2.5961 -0.5326 3.5743 7 1 3.5916 -0.9260 3.3685 8 8 1.7098 -1.6126 3.8743 9 6 2.6609 0.4204 4.7695 10 7 3.1646 -0.3021 5.9451 11 6 2.8107 0.4000 7.1860 12 6 4.6159 -0.5100 5.8534 13 6 5.0574 -1.4568 6.9395 14 1 4.3324 -1.8638 7.6287 15 6 6.3871 -1.8035 7.0534 16 7 6.7722 -2.6302 8.0009 17 14 7.6410 -1.1001 5.8609 18 1 8.1826 0.1712 6.4049 19 1 8.7489 -2.0717 5.6773 20 1 6.9886 -0.8403 4.5524 21 6 2.0324 -0.7105 -1.2304 22 7 2.0203 -1.9999 -1.4036 23 6 2.5440 -2.3019 -2.6195 24 6 2.7659 -3.5009 -3.3022 25 6 3.3304 -3.4814 -4.5460 26 6 3.6778 -2.2797 -5.1469 27 6 3.4679 -1.0849 -4.4923 28 6 2.9003 -1.0853 -3.2254 29 7 2.5643 -0.0970 -2.3219 30 6 2.7458 1.3450 -2.5051 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 1.4497 -1.4978 1.4102 35 1 2.7588 1.0464 2.1183 36 1 1.0870 0.6165 2.5525 37 1 0.8038 -1.3357 4.0683 38 1 3.3304 1.2488 4.5378 39 1 1.6639 0.8071 4.9803 40 1 1.7272 0.4036 7.3051 41 1 3.2678 -0.1091 8.0345 42 1 3.1744 1.4264 7.1392 43 1 4.8615 -0.9340 4.8798 44 1 5.1280 0.4448 5.9736 45 1 7.7077 -2.8737 8.0812 46 1 2.4958 -4.4415 -2.8454 47 1 3.5047 -4.4104 -5.0685 48 1 4.1194 -2.2809 -6.1326 49 1 3.7440 -0.1527 -4.9627 50 1 1.8549 1.7672 -2.9701 51 1 2.9082 1.8169 -1.5361 52 1 3.6094 1.5240 -3.1456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646519432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = 9.554493 kcal Electronic energy + Delta-G solvation = -30204.371939 eV Core-core repulsion = 26203.658135 eV Total energy + Delta-G solvation = -4000.713804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.13930 -39.72199 -38.62267 -37.62667 -36.50638 -35.16228 -34.59559 -32.54462 -31.41471 -30.55316 -29.82648 -29.40451 -27.82443 -26.85850 -25.42059 -24.56637 -23.16882 -22.69819 -22.42122 -21.63670 -20.68565 -19.07236 -18.40898 -18.02366 -17.46003 -17.17768 -16.91629 -16.59213 -16.43885 -16.04453 -15.86968 -15.50328 -15.35183 -14.98561 -14.96723 -14.77815 -14.60563 -14.43579 -14.18265 -13.96497 -13.87059 -13.60481 -13.28237 -13.13423 -13.03153 -12.83896 -12.78961 -12.61852 -12.51581 -12.40850 -12.35306 -12.25208 -12.15639 -11.83462 -11.62193 -11.45026 -11.30643 -10.86881 -10.79595 -10.75895 -9.42854 -9.22946 -9.03223 -8.93651 -8.29401 -6.31490 0.00640 0.57396 1.29243 1.33935 1.43699 1.60553 1.81593 2.32371 2.88303 2.96188 3.04243 3.16313 3.36691 3.54614 3.74480 3.84264 3.88735 3.98476 4.09693 4.12363 4.16231 4.17844 4.32557 4.37427 4.44850 4.44993 4.51143 4.54520 4.60821 4.62070 4.63460 4.69406 4.75354 4.79057 4.81832 4.88847 4.93858 5.01059 5.15220 5.20944 5.22365 5.23997 5.49005 5.56280 5.58675 5.61042 5.90508 5.99550 6.02308 6.23324 6.35273 6.41122 6.67386 6.74909 6.98311 7.10126 7.31484 8.87619 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.002370 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.679054 B =11811.112278 C =13097.802484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.118 0.882 4 N -0.690 5.690 5 C 0.045 3.955 6 C 0.120 3.880 7 H 0.061 0.939 8 O -0.562 6.562 9 C 0.026 3.974 10 N -0.543 5.543 11 C 0.040 3.960 12 C 0.174 3.826 13 C -0.513 4.513 14 H 0.037 0.963 15 C 0.006 3.994 16 N -0.948 5.948 17 Si 0.945 3.055 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.255 1.255 21 C 0.289 3.711 22 N -0.521 5.521 23 C 0.006 3.994 24 C -0.092 4.092 25 C -0.127 4.127 26 C -0.104 4.104 27 C -0.114 4.114 28 C 0.027 3.973 29 N -0.492 5.492 30 C 0.068 3.932 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.355 0.645 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.379 0.621 38 H 0.042 0.958 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.021 0.979 44 H -0.015 1.015 45 H 0.266 0.734 46 H 0.122 0.878 47 H 0.153 0.847 48 H 0.162 0.838 49 H 0.147 0.853 50 H 0.094 0.906 51 H 0.101 0.899 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.369 13.686 -29.521 35.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.056 3.944 3 H 0.135 0.865 4 N -0.323 5.323 5 C -0.084 4.084 6 C 0.060 3.940 7 H 0.080 0.920 8 O -0.367 6.367 9 C -0.103 4.103 10 N -0.267 5.267 11 C -0.108 4.108 12 C 0.047 3.953 13 C -0.551 4.551 14 H 0.055 0.945 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.768 3.232 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.179 1.179 21 C 0.022 3.978 22 N -0.240 5.240 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.135 4.135 28 C -0.082 4.082 29 N -0.182 5.182 30 C -0.073 4.073 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.175 0.825 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.060 0.940 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.003 0.997 45 H 0.075 0.925 46 H 0.141 0.859 47 H 0.171 0.829 48 H 0.180 0.820 49 H 0.165 0.835 50 H 0.112 0.888 51 H 0.120 0.880 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.518 12.431 -29.134 34.059 hybrid contribution 0.277 1.257 0.010 1.287 sum -12.241 13.688 -29.124 34.430 Atomic orbital electron populations 1.22379 0.93280 1.02944 1.04023 1.20005 0.94327 0.96218 0.83866 0.86461 1.60036 1.59090 1.10117 1.03101 1.22569 1.01621 0.94963 0.89285 1.21781 0.93464 0.87324 0.91475 0.92047 1.86694 1.23799 1.34194 1.92026 1.22834 1.01425 0.94825 0.91186 1.61705 1.14056 1.48588 1.02338 1.22223 1.00900 0.95317 0.92377 1.19915 0.85623 0.93822 0.95946 1.21293 0.93242 1.26582 1.14027 0.94481 1.25850 1.00678 0.95333 0.97270 1.70051 1.17352 1.36579 1.34969 0.85748 0.78541 0.78725 0.80145 1.18659 1.20747 1.17893 1.23910 0.95479 0.88145 0.90220 1.70303 1.23556 1.13204 1.16982 1.19592 1.04221 0.94747 0.92679 1.20276 1.00150 0.95375 0.95381 1.20993 0.99421 0.99937 0.94338 1.21313 0.99305 0.90811 1.00895 1.20313 1.01614 1.00526 0.91014 1.19224 1.05211 0.88870 0.94930 1.45340 1.50804 1.08214 1.13859 1.22335 1.04728 0.74822 1.05407 0.92910 0.89277 0.90970 0.82476 0.89263 0.91401 0.77301 0.93960 0.88083 0.90089 0.93750 0.95783 0.96058 0.99709 0.92479 0.85949 0.82925 0.82015 0.83548 0.88762 0.88035 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.14 71.98 0.66 -1.60 16 2 C 0.17 2.94 2.94 44.17 0.13 3.07 16 3 H 0.12 1.40 6.33 -2.39 -0.02 1.38 16 4 N -0.69 -15.86 6.21 -495.42 -3.07 -18.93 16 5 C 0.04 0.87 5.19 86.30 0.45 1.31 16 6 C 0.12 3.49 3.30 30.59 0.10 3.59 16 7 H 0.06 2.36 6.78 -2.39 -0.02 2.35 16 8 O -0.56 -17.59 12.55 -148.98 -1.87 -19.46 16 9 C 0.03 0.76 4.66 86.30 0.40 1.16 16 10 N -0.54 -22.28 4.56 -927.06 -4.22 -26.50 16 11 C 0.04 1.47 9.37 127.69 1.20 2.67 16 12 C 0.17 8.65 3.62 85.56 0.31 8.96 16 13 C -0.51 -30.98 8.94 25.60 0.23 -30.76 16 14 H 0.04 2.49 7.41 -2.91 -0.02 2.47 16 15 C 0.01 0.34 5.47 84.66 0.46 0.81 16 16 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 17 Si 0.94 46.12 27.47 68.60 1.88 48.00 16 18 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 21 C 0.29 6.96 6.71 137.92 0.93 7.88 16 22 N -0.52 -16.13 11.24 -179.97 -2.02 -18.15 16 23 C 0.01 0.17 7.23 39.45 0.29 0.45 16 24 C -0.09 -2.26 10.05 22.25 0.22 -2.04 16 25 C -0.13 -2.22 9.96 22.02 0.22 -2.00 16 26 C -0.10 -1.52 10.03 22.31 0.22 -1.29 16 27 C -0.11 -1.91 10.05 22.32 0.22 -1.69 16 28 C 0.03 0.63 6.87 38.86 0.27 0.89 16 29 N -0.49 -9.76 3.21 -528.85 -1.70 -11.46 16 30 C 0.07 0.60 10.92 127.77 1.39 1.99 16 31 H 0.05 0.94 8.13 -2.38 -0.02 0.92 16 32 H 0.09 0.85 7.45 -2.39 -0.02 0.83 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.35 9.15 7.86 -89.70 -0.71 8.44 16 35 H 0.09 1.53 8.06 -2.38 -0.02 1.51 16 36 H 0.07 0.88 7.44 -2.39 -0.02 0.86 16 37 H 0.38 8.16 9.04 -74.06 -0.67 7.49 16 38 H 0.04 1.17 8.00 -2.38 -0.02 1.15 16 39 H 0.10 2.20 7.94 -2.39 -0.02 2.18 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.04 1.96 6.67 -2.39 -0.02 1.94 16 42 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 43 H 0.02 1.10 5.69 -2.39 -0.01 1.08 16 44 H -0.01 -0.71 7.55 -2.38 -0.02 -0.72 16 45 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 47 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 48 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 49 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 50 H 0.09 0.46 8.14 -2.38 -0.02 0.45 16 51 H 0.10 0.61 6.87 -2.39 -0.02 0.59 16 52 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -86.01 416.85 -3.50 -89.51 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.50 Total: 24.76 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 7.70 Total: -6.59 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -10.72 Total: -136.23 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.87 Total: -19.46 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.00 kcal Total: -86.01 -3.50 -89.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646519432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.066 kcal (2) G-P(sol) polarization free energy of solvation -86.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds