Wall clock time and date at job start Wed Apr 1 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47175 * 2 1 4 4 N 1.46902 * 109.47190 * 120.00618 * 2 1 3 5 5 C 1.46904 * 110.99534 * 274.99858 * 4 2 1 6 6 C 1.53000 * 109.47085 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47253 * 305.00344 * 6 5 4 8 8 O 1.42900 * 109.47194 * 64.99751 * 6 5 4 9 9 C 1.52998 * 109.47107 * 184.99848 * 6 5 4 10 10 N 1.46899 * 109.46858 * 175.04575 * 9 6 5 11 11 C 1.46903 * 110.99991 * 163.94840 * 10 9 6 12 12 C 1.46902 * 111.00138 * 287.89426 * 10 9 6 13 13 C 1.50702 * 109.47206 * 170.00004 * 12 10 9 14 14 H 1.07990 * 119.99891 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99588 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00136 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.46844 * 90.00277 * 17 15 13 19 19 H 1.48497 * 109.47088 * 210.00471 * 17 15 13 20 20 H 1.48503 * 109.46723 * 330.00198 * 17 15 13 21 21 C 1.50702 * 109.46798 * 239.99884 * 2 1 3 22 22 N 1.30108 * 124.95439 * 285.02257 * 21 2 1 23 23 C 1.35785 * 109.64390 * 179.97438 * 22 21 2 24 24 C 1.39744 * 133.60410 * 180.02562 * 23 22 21 25 25 C 1.36599 * 119.88547 * 180.02562 * 24 23 22 26 26 C 1.38775 * 120.67244 * 359.97438 * 25 24 23 27 27 C 1.37853 * 120.44996 * 0.04573 * 26 25 24 28 28 C 1.38830 * 119.68792 * 359.95705 * 27 26 25 29 29 N 1.36041 * 124.94432 * 104.72178 * 21 2 1 30 30 C 1.46492 * 126.35398 * 0.02562 * 29 21 2 31 31 H 1.08999 * 109.47450 * 59.99825 * 1 2 3 32 32 H 1.09007 * 109.47103 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47089 * 299.99658 * 1 2 3 34 34 H 1.00901 * 111.00190 * 151.04523 * 4 2 1 35 35 H 1.08996 * 109.47355 * 59.99871 * 5 4 2 36 36 H 1.09001 * 109.46826 * 299.99768 * 5 4 2 37 37 H 0.96698 * 114.00266 * 60.00042 * 8 6 5 38 38 H 1.08997 * 109.47560 * 55.04389 * 9 6 5 39 39 H 1.08998 * 109.46907 * 295.04026 * 9 6 5 40 40 H 1.08998 * 109.47439 * 189.27288 * 11 10 9 41 41 H 1.08994 * 109.47470 * 69.26701 * 11 10 9 42 42 H 1.09004 * 109.46549 * 309.26905 * 11 10 9 43 43 H 1.08997 * 109.47475 * 290.00611 * 12 10 9 44 44 H 1.09000 * 109.46537 * 50.00068 * 12 10 9 45 45 H 0.97003 * 119.99947 * 179.97438 * 16 15 13 46 46 H 1.07998 * 120.05648 * 0.02572 * 24 23 22 47 47 H 1.07999 * 119.66635 * 179.97438 * 25 24 23 48 48 H 1.08007 * 119.77606 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.15743 * 179.97438 * 27 26 25 50 50 H 1.09006 * 109.47314 * 89.99774 * 30 29 21 51 51 H 1.08997 * 109.47891 * 210.00346 * 30 29 21 52 52 H 1.09005 * 109.47046 * 330.00787 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9710 -1.4085 3.7500 8 8 3.9446 -0.9486 3.3477 9 6 2.5440 0.3850 4.7969 10 7 2.9243 -0.3741 5.9957 11 6 3.2553 0.5278 7.1070 12 6 1.8649 -1.3163 6.3803 13 6 2.3805 -2.2420 7.4519 14 1 3.3937 -2.1402 7.8116 15 6 1.5583 -3.2180 7.9738 16 7 0.3243 -3.3415 7.5361 17 14 2.1972 -4.3650 9.3026 18 1 1.9281 -3.7739 10.6380 19 1 1.5116 -5.6778 9.1950 20 1 3.6600 -4.5550 9.1310 21 6 2.0322 -0.7105 -1.2305 22 7 2.0201 -1.9999 -1.4039 23 6 2.5436 -2.3019 -2.6198 24 6 2.7655 -3.5007 -3.3028 25 6 3.3257 -3.4807 -4.5485 26 6 3.6781 -2.2793 -5.1470 27 6 3.4689 -1.0845 -4.4919 28 6 2.9008 -1.0853 -3.2252 29 7 2.5591 -0.0965 -2.3242 30 6 2.7355 1.3458 -2.5097 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.9173 -1.1206 1.0286 35 1 1.0871 0.6162 2.5525 36 1 2.7589 1.0460 2.1182 37 1 4.5585 -0.2197 3.1837 38 1 1.5323 0.7721 4.9178 39 1 3.2365 1.2152 4.6578 40 1 3.6889 -0.0474 7.9250 41 1 2.3496 1.0257 7.4530 42 1 3.9732 1.2744 6.7674 43 1 1.0066 -0.7625 6.7606 44 1 1.5641 -1.8997 5.5100 45 1 -0.2540 -4.0285 7.9030 46 1 2.4946 -4.4413 -2.8465 47 1 3.4959 -4.4093 -5.0730 48 1 4.1197 -2.2803 -6.1327 49 1 3.7454 -0.1523 -4.9620 50 1 3.7165 1.6427 -2.1384 51 1 2.6598 1.5879 -3.5698 52 1 1.9616 1.8804 -1.9588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646519436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:02 Heat of formation + Delta-G solvation = 8.263969 kcal Electronic energy + Delta-G solvation = -30104.526878 eV Core-core repulsion = 26103.757112 eV Total energy + Delta-G solvation = -4000.769765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.21308 -39.70769 -38.63683 -37.54396 -36.50009 -35.21323 -34.60147 -32.57955 -31.42094 -30.39025 -29.67737 -29.24586 -27.85776 -26.99856 -25.56565 -24.59315 -23.19407 -22.78918 -22.30082 -21.71982 -20.66081 -18.62953 -18.40077 -18.07338 -17.57168 -17.28376 -16.96928 -16.61594 -16.49277 -16.04629 -15.99149 -15.44529 -15.32240 -14.98612 -14.96074 -14.84440 -14.64849 -14.15188 -14.06919 -13.92413 -13.62930 -13.52977 -13.31247 -13.10616 -12.91658 -12.87463 -12.80398 -12.59044 -12.53019 -12.39882 -12.35135 -12.32722 -12.20559 -12.10592 -11.49458 -11.34966 -11.31326 -10.87933 -10.78320 -10.59689 -9.43515 -9.29578 -9.07076 -8.93226 -8.19470 -6.28924 -0.04296 0.55517 1.38779 1.41741 1.53089 1.56253 1.73457 2.40589 2.87768 2.92586 3.01836 3.12892 3.37638 3.49230 3.69250 3.83171 3.91617 3.96556 4.10623 4.14749 4.16803 4.22496 4.32767 4.35456 4.43865 4.44894 4.49265 4.59123 4.60619 4.62181 4.65593 4.70831 4.79464 4.81823 4.83668 4.89336 5.08951 5.13248 5.19896 5.25181 5.29516 5.33368 5.45281 5.57257 5.59292 5.65549 5.90692 5.99621 6.08295 6.17541 6.26716 6.36656 6.67319 6.87097 6.93655 7.05541 7.40261 8.91619 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.002075 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.006647 B =13490.259326 C =14459.094777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 H 0.092 0.908 4 N -0.684 5.684 5 C 0.045 3.955 6 C 0.122 3.878 7 H 0.061 0.939 8 O -0.562 6.562 9 C 0.029 3.971 10 N -0.546 5.546 11 C 0.043 3.957 12 C 0.210 3.790 13 C -0.523 4.523 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.269 3.731 22 N -0.514 5.514 23 C 0.003 3.997 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.099 4.099 27 C -0.113 4.113 28 C 0.033 3.967 29 N -0.488 5.488 30 C 0.066 3.934 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.346 0.654 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.378 0.622 38 H 0.031 0.969 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.008 0.992 42 H 0.084 0.916 43 H -0.040 1.040 44 H 0.003 0.997 45 H 0.264 0.736 46 H 0.121 0.879 47 H 0.154 0.846 48 H 0.165 0.835 49 H 0.150 0.850 50 H 0.087 0.913 51 H 0.104 0.896 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 15.052 -28.206 32.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.063 3.937 3 H 0.109 0.891 4 N -0.318 5.318 5 C -0.085 4.085 6 C 0.062 3.938 7 H 0.079 0.921 8 O -0.368 6.368 9 C -0.100 4.100 10 N -0.270 5.270 11 C -0.105 4.105 12 C 0.083 3.917 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.002 3.998 22 N -0.234 5.234 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.145 4.145 26 C -0.118 4.118 27 C -0.134 4.134 28 C -0.077 4.077 29 N -0.178 5.178 30 C -0.075 4.075 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.049 0.951 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.103 0.897 43 H -0.022 1.022 44 H 0.021 0.979 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.172 0.828 48 H 0.182 0.818 49 H 0.168 0.832 50 H 0.106 0.894 51 H 0.123 0.877 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.702 13.416 -27.487 31.114 hybrid contribution 0.175 0.892 0.432 1.006 sum 5.878 14.308 -27.056 31.165 Atomic orbital electron populations 1.21777 0.92198 1.02385 1.02818 1.20045 0.96735 0.94668 0.82272 0.89080 1.60296 1.34950 1.33070 1.03502 1.22612 1.02401 0.93646 0.89823 1.21739 0.83296 0.96924 0.91843 0.92120 1.86687 1.18619 1.37748 1.93752 1.22781 0.99754 0.96191 0.91274 1.61931 1.42364 1.17654 1.05003 1.22204 0.98972 0.95176 0.94179 1.19381 0.87490 0.90423 0.94357 1.21483 0.98674 1.15605 1.20363 0.92173 1.25941 0.95061 0.99282 0.99685 1.70089 1.07797 1.35061 1.44549 0.85394 0.78575 0.77818 0.78913 1.19431 1.20792 1.19138 1.23781 0.96840 0.88272 0.90887 1.70402 1.22304 1.13242 1.17433 1.19605 1.04363 0.94941 0.92650 1.20289 0.99981 0.95336 0.95427 1.21002 0.99311 1.00081 0.94130 1.21348 0.98913 0.90718 1.00868 1.20330 1.01578 1.00638 0.90804 1.19225 1.04887 0.88629 0.94917 1.45365 1.50561 1.08266 1.13657 1.22375 1.04682 0.74601 1.05807 0.90833 0.93714 0.90413 0.83410 0.89367 0.91662 0.77372 0.95058 0.88078 0.92914 0.97310 0.89726 1.02239 0.97912 0.92768 0.86132 0.82848 0.81774 0.83240 0.89424 0.87737 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 71.98 0.68 -2.06 16 2 C 0.17 3.60 2.86 44.17 0.13 3.72 16 3 H 0.09 1.23 6.68 -2.39 -0.02 1.22 16 4 N -0.68 -18.34 6.28 -495.45 -3.11 -21.45 16 5 C 0.04 1.05 5.16 86.30 0.44 1.49 16 6 C 0.12 4.06 3.26 30.59 0.10 4.16 16 7 H 0.06 2.72 6.46 -2.39 -0.02 2.70 16 8 O -0.56 -18.87 12.80 -148.98 -1.91 -20.78 16 9 C 0.03 0.96 4.61 86.30 0.40 1.36 16 10 N -0.55 -23.93 4.66 -927.06 -4.32 -28.25 16 11 C 0.04 1.63 9.32 127.69 1.19 2.82 16 12 C 0.21 11.68 4.57 85.56 0.39 12.08 16 13 C -0.52 -31.23 8.58 25.60 0.22 -31.01 16 14 H 0.06 3.53 7.10 -2.92 -0.02 3.51 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 16 N -0.93 -58.84 13.29 21.45 0.28 -58.56 16 17 Si 0.97 46.53 29.54 68.60 2.03 48.55 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 C 0.27 6.65 6.36 137.92 0.88 7.53 16 22 N -0.51 -16.57 11.24 -179.96 -2.02 -18.59 16 23 C 0.00 0.07 7.23 39.45 0.29 0.36 16 24 C -0.09 -2.21 10.05 22.25 0.22 -1.98 16 25 C -0.13 -2.08 9.96 22.01 0.22 -1.86 16 26 C -0.10 -1.31 10.03 22.31 0.22 -1.09 16 27 C -0.11 -1.72 10.05 22.32 0.22 -1.50 16 28 C 0.03 0.73 6.87 38.86 0.27 1.00 16 29 N -0.49 -9.30 3.21 -528.84 -1.70 -11.00 16 30 C 0.07 0.52 10.73 127.77 1.37 1.89 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 1.44 7.45 -2.39 -0.02 1.43 16 34 H 0.35 10.37 7.91 -89.69 -0.71 9.66 16 35 H 0.09 1.98 7.44 -2.39 -0.02 1.96 16 36 H 0.07 1.07 8.06 -2.39 -0.02 1.05 16 37 H 0.38 8.69 9.05 -74.06 -0.67 8.02 16 38 H 0.03 1.06 8.05 -2.39 -0.02 1.04 16 39 H 0.10 2.52 7.82 -2.39 -0.02 2.50 16 40 H 0.05 2.18 7.02 -2.39 -0.02 2.17 16 41 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 42 H 0.08 2.47 7.88 -2.39 -0.02 2.46 16 43 H -0.04 -2.39 8.07 -2.39 -0.02 -2.41 16 44 H 0.00 0.17 6.34 -2.39 -0.02 0.16 16 45 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 47 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 48 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 49 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 50 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 51 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.10 0.46 7.29 -2.38 -0.02 0.44 16 Total: -1.00 -84.26 420.61 -3.49 -87.75 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.45 Total: 25.07 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 7.70 Total: -2.75 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -10.86 Total: -137.84 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.91 Total: -20.78 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -84.26 -3.49 -87.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646519436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.012 kcal (2) G-P(sol) polarization free energy of solvation -84.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds